misleep 0.2.16__tar.gz → 0.2.18__tar.gz

{misleep-0.2.16 → misleep-0.2.18}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: misleep
-Version: 0.2.16
+Version: 0.2.18
 Summary: MiSleep: Mice Sleep EEG/EMG visualization, scoring and analysis.
 Home-page: https://github.com/BryanWang0702/MiSleep/
 Download-URL: https://github.com/BryanWang0702/MiSleep/

{misleep-0.2.16 → misleep-0.2.18}/misleep/config.ini

@@ -1,5 +1,5 @@
 [gui]
-version = v0.2.16
+version = v0.2.18
 updatetime = 2026/6/15
 marker = ['half_signal', 'first REM', 'WindEEG', 'W-R', 'maker']
 startend = ['high_theta', 'REM', 'Wake', 'Spindle', 'SWA', 'start end label', 'start end label']

{misleep-0.2.16 → misleep-0.2.18}/misleep/gui/utils.py

@@ -1,6 +1,7 @@
 from misleep.io.base import MiAnnotation
 import pandas as pd
 from collections import Counter
+from scipy.ndimage import gaussian_filter1d
 
 import datetime
 
@@ -148,9 +149,11 @@ def cal_draw_spectrum(data, sf, nperseg, freq_band=None, relative=None):
 
     if freq_band is None:
         freq_band = [0.5, 30]
-    F, P = welch(data, sf, nperseg=nperseg)
+    F, P = welch(data, sf, nperseg=sf*1, nfft=4096, scaling="density")
     
     F = np.array([round(each, 1) for each in F])
+    # Do smooth
+    P = gaussian_filter1d(P, sigma=2)
 
     # find frequency band
     if freq_band is not None:

{misleep-0.2.16 → misleep-0.2.18}/misleep/preprocessing/spectral.py

@@ -9,6 +9,7 @@
 import numpy as np
 from scipy.signal import welch, stft
 from scipy.integrate import simps
+from scipy.ndimage import gaussian_filter1d
 
 from misleep.utils.signals import signal_filter
 
@@ -54,8 +55,9 @@ def spectrum(signal, sf, band=None, relative=True, win_sec=1):
         data=signal, sf=sf, btype="bandpass", low=band[0], high=band[1]
     )
 
-    freq, psd = welch(signal, sf, nperseg=int(sf * win_sec), nfft=4096, scaling="density")
+    freq, psd = welch(signal, sf, nperseg=int(sf * 1), nfft=4096, scaling="density")
     freq = np.array([round(each, 1) for each in freq])
+    psd = gaussian_filter1d(psd, sigma=2)
 
     idx_freq = np.logical_and(freq >= band[0], freq <= band[1])
     freq = freq[idx_freq]

{misleep-0.2.16 → misleep-0.2.18}/misleep.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: misleep
-Version: 0.2.16
+Version: 0.2.18
 Summary: MiSleep: Mice Sleep EEG/EMG visualization, scoring and analysis.
 Home-page: https://github.com/BryanWang0702/MiSleep/
 Download-URL: https://github.com/BryanWang0702/MiSleep/

{misleep-0.2.16 → misleep-0.2.18}/setup.py

@@ -11,7 +11,7 @@ MAINTAINER_EMAIL = "swang@gmail.com"
 URL = "https://github.com/BryanWang0702/MiSleep/"
 LICENSE = "BSD (3-clause)"
 DOWNLOAD_URL = "https://github.com/BryanWang0702/MiSleep/"
-VERSION = "0.2.16"
+VERSION = "0.2.18"
 
 INSTALL_REQUIRES = [
     "numpy>=1.18.1",