misleep 0.1.0b0__tar.gz

misleep-0.1.0b0/LICENSE

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+BSD 3-Clause License
+
+Copyright (c) 2018, Raphael Vallat
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

misleep-0.1.0b0/PKG-INFO

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+Metadata-Version: 2.1
+Name: misleep
+Version: 0.1.0b0
+Summary: MiSleep: Mice Sleep EEG/EMG visualization, scoring and analysis.
+Home-page: https://github.com/BryanWang0702/MiSleep/
+Download-URL: https://github.com/BryanWang0702/MiSleep/
+Author: Xueqiang Wang
+Author-email: swang@gmail.com
+Maintainer: Xueqiang Wang
+Maintainer-email: swang@gmail.com
+License: BSD (3-clause)
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: License :: OSI Approved :: BSD License
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: Unix
+Classifier: Operating System :: MacOS
+License-File: LICENSE
+Requires-Dist: numpy>=1.18.1
+Requires-Dist: matplotlib
+Requires-Dist: scipy
+Requires-Dist: pyedflib
+Requires-Dist: hdf5storage
+Requires-Dist: pyqt5
+
+# MiSleep
+MiSleep is for EEG/EMG signal processing and visualization
+
+## Get start
+```shell
+pip install misleep
+```

misleep-0.1.0b0/README.md

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+# MiSleep
+MiSleep is for EEG/EMG signal processing and visualization
+
+## Get start
+```shell
+pip install misleep
+```

misleep-0.1.0b0/misleep/__init__.py

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+# -*- coding: UTF-8 -*-
+
+from .io import *
+from .preprocessing import *
+from .utils import *
+from .viz import *
+from .gui import *
+
+__author__ = "Xueqiang Wang <swang9194@gmail.com>"
+__version__ = "0.0.1"

misleep-0.1.0b0/misleep/__main__.py

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+import sys
+import os
+sys.path.append(os.getcwd()+'\misleep')
+print(os.getcwd())
+
+from misleep.gui.show import show
+    
+if __name__ == '__main__':
+
+    show()

misleep-0.1.0b0/misleep/config.ini

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+[gui]
+version = "v0.1.0 Beta"
+updatetime = "2024/04/01"
+marker = ['pat', 'add water', 'third']
+startend = ['Spindle', 'SWA', 'start end label', 'start end label', 'start end label', 'start end label', 'start end label']
+statemap = {"1": "NREM", "2": "REM", "3": "Wake", "4": "INIT"}
+statecolor = {"1": "orange", "2": "skyblue", "3": "red", "4": "white"}
+markerlinecolor = "red"
+startendlinecolor = "blue"
+openpath = E:/workplace/EEGProcessing/00_DATA/20240114_0700_WXQ_3mice_24h/mouse2/mouse2_label.txt
+

misleep-0.1.0b0/misleep/gui/__init__.py

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+# -*- coding: UTF-8 -*-
+"""
+@Project: misleep
+@File: __init__.py
+@Author: Xueqiang Wang
+@Date: 2024/2/22
+@Description:  
+"""
+
+from .about import *
+from .main_window import *
+from .spec_window import *
+from .show import *
+from .resources.misleep import *
+from .utils import *
+from .thread import *
+from .label_dialog import *

misleep-0.1.0b0/misleep/gui/about.py

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+# -*- coding: UTF-8 -*-
+"""
+@Project: MiSleep_v2 
+@File: about.py
+@Author: Xueqiang Wang
+@Date: 2024/3/8
+@Description:  
+"""
+from PyQt5.QtCore import QCoreApplication, Qt
+from PyQt5.QtWidgets import QDialog
+
+from misleep.gui.uis.about_ui import Ui_AboutDialog
+
+
+class about_dialog(QDialog, Ui_AboutDialog):
+    def __init__(self, parent=None, version=None, update_time=None):
+        """
+        Initialize the About dialog of MiSleep
+        """
+        super().__init__(parent)
+
+        # Enable high dpi devices
+        QCoreApplication.setAttribute(Qt.AA_EnableHighDpiScaling)
+        self.setupUi(self)
+        if version:
+            self.VersionLabel.setText(f"Version: {version}")
+        if update_time:
+            self.UpdateLabel.setText(f"Update: {update_time}")
+
+

misleep-0.1.0b0/misleep/gui/label_dialog.py

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+# -*- coding: UTF-8 -*-
+"""
+@Project: MiSleep_v2 
+@File: label_dialog.py
+@Author: Xueqiang Wang
+@Date: 2024/3/28
+@Description:  
+"""
+from PyQt5.QtCore import QCoreApplication, Qt, QStringListModel
+from PyQt5.QtWidgets import QDialog, QMessageBox
+import json
+
+from misleep.gui.uis.label_dialog_ui import Ui_Dialog
+from misleep.gui.thread import SaveThread
+
+
+class label_dialog(QDialog, Ui_Dialog):
+    def __init__(self, parent=None, config=None):
+        """
+        Initialize the Label dialog of MiSleep
+        """
+        super().__init__(parent)
+
+        # Enable high dpi devices
+        QCoreApplication.setAttribute(Qt.AA_EnableHighDpiScaling)
+        self.setupUi(self)
+
+        # Load configuration
+        self.config = config
+
+        # Type representing marker(0) or start_end(1)
+        self._type = 0
+
+        # List view of selected labels
+        self.slm = QStringListModel()
+        self.LabelListView.setModel(self.slm)
+        self.marker_label = [each[1:-1] for each in 
+                             self.config['gui']['marker'][1:-1].split(', ')]
+        self.start_end_label = [each[1:-1] for each in 
+                                self.config['gui']['startend'][1:-1].split(', ')]
+        self.label_name = ""
+        self.closed = False
+
+        self.OKBt.clicked.connect(self.submit_label)
+        self.CancelBt.clicked.connect(self.cancel_event)
+        self.AddBt.clicked.connect(self.add_label)
+        self.DeleteBt.clicked.connect(self.delete_label)
+
+        self.slm.dataChanged.connect(self.update_label_list)
+        self.add_or_delete = False
+
+
+    def show_contents(self, idx=0):
+        """Show label contents"""
+        self.closed = False
+
+        if self._type == 0:
+            self.slm.setStringList(self.marker_label)
+            self.LabelListView.setModel(self.slm)
+        
+        if self._type == 1:
+            self.slm.setStringList(self.start_end_label)
+            self.LabelListView.setModel(self.slm)
+        
+        if idx == -1:
+            idx = len(self.slm.stringList()) - 1
+        idx = self.slm.index(idx)
+        self.LabelListView.setCurrentIndex(idx)
+
+    def submit_label(self):
+        """Triggered by Clicking Ok Button"""
+        
+        if self._type == 0:
+            self.label_name = self.marker_label[
+                self.LabelListView.selectedIndexes()[0].row()
+            ]
+        
+        else:
+            self.label_name = self.start_end_label[
+                self.LabelListView.selectedIndexes()[0].row()
+            ]
+
+        self.hide()
+
+    def update_label_list(self):
+        """Update label list when edited"""
+        if not self.add_or_delete:
+            string_list = self.slm.stringList()
+
+            if self._type == 0:
+                self.marker_label = string_list
+            if self._type == 1:
+                self.start_end_label = string_list
+        else:
+            self.show_contents(idx=-1)
+            self.add_or_delete = False
+
+        self.save_config()
+
+    def add_label(self):
+        if self._type == 0:
+            self.marker_label.append('label')
+        elif self._type == 1:
+            self.start_end_label.append('start end label')
+        
+        self.add_or_delete = True
+        self.update_label_list()
+
+    def delete_label(self):
+        if not self.LabelListView.selectedIndexes():
+            return
+        if len(self.slm.stringList()) == 1:
+            QMessageBox.about(self, "Error", "You can't delete all labels!")
+            return
+        if self._type == 0:
+            self.marker_label.pop(
+                self.LabelListView.selectedIndexes()[0].row()
+            )
+        elif self._type == 1:
+            self.start_end_label.pop(
+                self.LabelListView.selectedIndexes()[0].row()
+            )
+        self.add_or_delete = True
+        self.update_label_list()
+
+    def save_config(self):
+        """When label changed, save configuration to file, open a new thread"""
+        self.config.set('gui', 'MARKER', str(self.marker_label))
+        self.config.set('gui', 'STARTEND', str(self.start_end_label))
+        save_thread = SaveThread(file=self.config, 
+                                 file_path='./misleep/config.ini')
+        save_thread.save_config()
+        save_thread.quit()
+    
+    def cancel_event(self):
+        """Triggered by the `cancel` button"""
+        self.closed = True
+        self.hide()
+    
+    def closeEvent(self, event):
+        event.ignore()
+        self.closed = True
+        self.hide()
+