miepython 3.1.0__tar.gz → 3.3.0__tar.gz

miepython-3.3.0/CHANGELOG.rst

@@ -0,0 +1,628 @@
+Changelog
+=========
+
+3.3.0 (07/28/2026)
+-------------------
+*   fix the docstring examples in ``core.py``, which had rotted unnoticed.  The
+    ``coefficients`` examples called ``mie_coefficients``, a name that never
+    existed, showed the imaginary parts with the wrong sign, and still included the
+    padding element ``an_bn`` no longer returns; the ``efficiencies_mx`` examples
+    used a different function's signature and printed an invented repr.  The
+    Returns section also described a tuple where an ndarray comes back
+*   run the docstring examples as part of the test suite, so they cannot rot again.
+    They are written with explicit formatting rather than bare array reprs, which
+    keeps them independent of NumPy's print precision
+*   keep one copy of the scattering-function normalization rules.  ``core`` and
+    ``rayleigh`` held the same thirty lines differing only in which efficiencies
+    they consulted, so ``core.normalization_factor`` now takes an
+    ``efficiency_source`` and ``rayleigh`` passes its own
+*   accept an ``rng`` argument in ``generate_mie_costheta``.  It drew from the
+    process-wide ``numpy.random``, which a caller could only control by reseeding
+    the whole program; passing ``numpy.random.default_rng(seed)`` now gives a
+    reproducible stream and leaves the global one alone.  Omitting it behaves as
+    before
+*   document the angular-argument convention: a scalar ``mu`` counts as one angle
+    and returns a length-one array, except in ``phase_matrix``, which squeezes it
+    away.  ``docs/01_basics.ipynb`` demonstrates the first half deliberately, so
+    both are now stated in the docstrings and pinned by tests
+*   fix ``make readme_images``, which had never worked: ``.PHONY`` declared that name
+    but the rule below it was written ``readme:``, so the advertised command failed
+    with "No rule to make target" while an undocumented ``make readme`` did the job
+*   drop ``sync`` from ``make help``.  No such target exists; the one that syncs the
+    environment is ``venv``, and it was not listed at all.  Also corrected
+    ``pylint-check``, described as "Same as lint above" when it runs pylint alone, and
+    moved the individual check targets out of the packaging section into the lint one
+    where they belong
+*   check the Makefile's help text against the rules it defines, so a target cannot be
+    advertised, or declared phony, without existing.  These four bugs were all of the
+    same kind -- the help block is a pile of ``@echo`` lines with nothing tying it to
+    the rules underneath -- and nothing could have caught them
+*   generate the README figures reproducibly.  matplotlib stamps each SVG with the
+    current time and names clip paths and glyphs from a random salt, so re-running
+    ``make readme_images`` produced files differing on a hundred lines even when the
+    figures were pixel-for-pixel identical.  There was no way to tell "a plot changed"
+    from "matplotlib rolled different ids".  Fixing ``svg.hashsalt`` and passing
+    ``metadata={"Date": None}`` makes repeated runs byte-identical, and the committed
+    images are regenerated once against that
+*   point the README license badge at ``blob/main`` rather than ``blob/master``.  There
+    is no master branch; the link worked only because GitHub silently redirects
+*   evaluate the near fields for every point at once instead of one point at a time.
+    ``field.py`` walked the grid with ``np.ndindex`` and called into
+    ``scipy.special`` separately for each point, so a 41x41 slice spent 0.4 s almost
+    entirely in scipy's per-call overhead rather than on Bessel functions.  The points
+    are now split once into those inside the sphere and those outside -- the two sides
+    need different radial functions and different media, but within a side every point
+    does the same arithmetic -- and each group is evaluated as a
+    ``(n_points, n_terms)`` batch.  Roughly 18x faster: that slice takes 0.022 s, and
+    a 101x101 slice drops from 2.4 s to 0.13 s.  Every returned value is bitwise
+    identical to before, which is checked point by point against evaluating the same
+    coordinates individually
+*   evaluate the spherical Hankel functions over orders ``0..n+1`` in one call rather
+    than making four separate calls that recompute shared orders.  ``xi'_n`` needs
+    ``h1`` at ``n-1``, ``n`` and ``n+1``, and the order-``n`` value was being computed
+    twice; slicing one array instead cuts that part of the work to a quarter
+*   drop the three near-field per-point evaluators and the two loop drivers in favour
+    of a single batched routine, 63 fewer statements for the same physics.
+    ``_vsh_components_base`` now takes an explicit ``inside`` flag and arrays of
+    coordinates, so it no longer re-derives from ``d_sphere`` which side it is on
+*   make the submodules reachable, each in the way that suits it.
+    ``miepython.rayleigh`` needs only NumPy and is now imported with the package, so
+    ``import miepython`` is enough to reach it; ``miepython.vsh`` requires the
+    optional ``scipy`` and is imported inside the same guard as ``field``, staying
+    absent when scipy is not installed; ``miepython.monte_carlo`` imports
+    ``miepython`` itself, so importing it from the package would be circular and it
+    remains a separate ``import miepython.monte_carlo``.  All three are now described
+    in the package docstring, and ``monte_carlo``'s own docstring shows the full
+    workflow and says why it is not imported for you
+*   have ``vsh`` reach ``D_calc`` through ``._backend`` instead of importing
+    ``miepython`` for it.  The old import was a cycle that worked only because the
+    call is deferred to run time, and importing ``vsh`` from ``__init__`` would have
+    depended on that
+*   fix the call signatures listed in ``vsh``'s module docstring.  All four vector
+    spherical harmonics were advertised as ``(n, k, d_sphere, r, theta, phi)``; they
+    actually take a wavelength rather than a wavenumber and a refractive index
+    besides, ``(n, lambda0, d_sphere, m_index, r, theta, phi)``, so anyone following
+    the docstring got a ``TypeError``.  The four ``*_array`` variants went unmentioned
+    altogether.  Signatures written out in prose are now checked against the code
+*   fix two stale references in the notebooks: ``mie.mie_S1_S2`` in
+    ``docs/03a_normalization.ipynb``, together with the comparison values it quotes,
+    and a commented-out ``mie._D_calc`` in ``docs/10_basic_tests.ipynb``
+*   fix off-by-one in ``n_pole`` for ``S1_S2`` and everything built on it
+    (``i_par``, ``i_per``, ``i_unpolarized``, ``phase_matrix``, ``intensities``).
+    ``n_pole=1`` returned the quadrupole instead of the dipole; it now matches
+    the convention already used by ``efficiencies_mx``
+*   raise ``ValueError`` for an ``n_pole`` beyond the truncated series instead of
+    returning zeros or an ``IndexError``
+*   add multipole regression tests (series sum, closed form, per-multipole
+    optical theorem) and re-execute ``docs/12_multipoles.ipynb``
+*   implement the ``e_field`` argument of ``efficiencies_mx``, which was accepted
+    and documented but silently ignored. With ``n_pole > 0`` it now selects the
+    electric multipole a_n (``e_field=True``, the default) or the magnetic
+    multipole b_n (``e_field=False``). **Behavior change:** ``n_pole > 0``
+    previously returned a_n and b_n combined; that total is now
+    ``e_field=True`` plus ``e_field=False``
+*   make the two backends agree on ``g`` when ``n_pole > 0``. The no-JIT backend
+    returned ``None`` (which became ``nan`` for array input) while the JIT
+    backend returned ``0``. Both now return ``0.0``, which is the exact value:
+    an isolated multipole of one parity scatters symmetrically about 90 degrees
+*   fix an operator-precedence bug in the perfectly-conducting guard of ``cn_dn``.
+    ``a and b or c`` made the test true for every finite index, so ``cn_dn(0j, x)``
+    raised ``ZeroDivisionError`` and an infinite index produced ``nan``. The
+    internal coefficients are now zero for a perfect conductor, as intended
+*   drop ``fastmath`` from the numba ``_cn_dn_nb`` kernel. It implies LLVM's
+    ``ninf``, which folded the ``np.isinf`` guard to ``False`` and defeated the
+    fix above in the JIT backend. This also improves JIT/no-JIT agreement
+*   make the internal-field coefficients ``c_n`` and ``d_n`` numerically stable.
+    ``psi_n`` came from the three-term upwards recurrence, which is contaminated
+    by the growing ``chi_n`` solution once n exceeds ``|mx|``.  That is the normal
+    case for a relative index below one, where the coefficients were wrong by up
+    to 140%.  ``psi_n`` now uses Miller's downwards recurrence seeded above ``|z|``
+    and normalised against whichever of ``psi_0`` or ``psi_1`` is larger, and
+    the logarithmic derivatives take the always-stable downwards route.
+    Worst error against a direct SciPy evaluation over 7320 cases drops from
+    90 to 3e-9, and the JIT and no-JIT backends now agree to 5e-15 where they
+    previously differed by up to a factor of 39
+*   always use the downwards recurrence for the logarithmic derivative ``D_n``.
+    Wiscombe's criterion chose between the two recurrences from the refractive
+    index alone, never from the number of terms, so it picked the upwards
+    recurrence for small spheres where it is unstable.  For a lossless sphere
+    ``Re(a_n)`` must equal ``|a_n|**2``; at m=1.05, x=0.1 the real parts of the
+    quadrupole and higher coefficients came out with the wrong sign and up to 12
+    orders of magnitude too large, which made ``efficiencies_mx(n_pole=3)``
+    report a negative extinction efficiency.  That identity now holds to 4e-24
+    over all lossless cases tested, and ``qext`` and ``qsca`` agree to 5e-16
+    where they used to differ by 2e-7.  The pure-python backend is about 20%
+    slower for a large sweep of size parameters; the numba backend is unchanged
+*   remove ``fastmath`` from every numba kernel.  Besides defeating the
+    perfectly-conducting guard above, its reassociation degraded the exact
+    lossless identity by roughly six times relative to the pure-python backend.
+    Costs about 10% on a large sweep of size parameters
+*   ``an_bn`` no longer pads a zero onto the end of ``a`` and ``b``, and ``cn_dn``
+    no longer computes one order more than ``an_bn``.  Both now return exactly
+    Wiscombe's number of terms with every entry a real coefficient, so the
+    internal and external series share one truncation.  The retained ``a_n`` and
+    ``b_n`` are bit-for-bit unchanged, and the arrays are one element shorter
+*   ``an_bn(m, x)`` works on both backends.  ``_an_bn_py`` defaulted ``n_pole`` to
+    zero but the numba kernel's eager signature could not, so the two-argument
+    call raised ``TypeError`` with the JIT on.  ``_an_bn_nb`` is now compiled
+    lazily, which allows the default
+*   group the arithmetic in the numba ``_an_bn_nb`` and ``_cn_dn_nb`` kernels the
+    way the pure-python ones do.  Multiplying by a precomputed ``1/x`` in one and
+    dividing by ``x`` in the other differed by one ulp, and the psi recurrence
+    amplified that to 2.6e-7 between the backends on significant coefficients.
+    They now agree to 1e-13
+*   ``an_bn`` builds ``psi_n`` with Miller's downwards recurrence, the same
+    treatment ``cn_dn`` already had, and builds ``xi_n`` as ``psi_n + i*chi_n``
+    from an upwards ``chi_n`` recurrence.  The upwards ``psi_n`` recurrence was
+    accurate enough inside Wiscombe's truncation but lost all relative accuracy
+    beyond it -- about 1e-6 at the last kept order, and 1e10 or worse a few orders
+    later -- so asking for extra terms returned noise.  Requesting more orders now
+    converges instead: the near-field boundary mismatch at W+8 terms improves from
+    4.7e-2 to 3.1e-6, and it keeps improving to W+16 rather than diverging.
+    Building ``xi_n`` from the same ``psi_n`` preserves the lossless identity
+    ``Re(a_n) == |a_n|**2`` at 5.6e-16.  Within the standard truncation nothing
+    moves by more than 1e-11, so this is headroom rather than a correction.  The
+    pure-python backend costs about 7% more for a large sweep; numba is unchanged.
+    ``xi_n`` itself was already fine: it is dominated by the growing ``chi_n``
+    solution, for which the upwards recurrence is the stable direction, and it
+    matches SciPy to 1e-15 even twenty orders past the truncation
+*   assert the scattnlay comparison instead of only plotting it.  The reference
+    arrays under ``docs/data`` were used solely by ``docs/15_2D_fields.ipynb``,
+    which printed relative errors without checking them, so a near-field
+    regression was invisible; the median error improved 19x during this release
+    and nothing would have noticed either that or its reversal.
+    ``tests/test_scattnlay_reference.py`` now checks the scalar efficiencies,
+    which are inlined like the existing MIEV0 values and need no data files, and
+    compares both 121x121 field grids point by point.  Grid points that land
+    exactly on the sphere surface are excluded, since the radial E component is
+    discontinuous there and the two codes may put them on opposite sides
+*   ``docs/15_2D_fields.ipynb`` reads the reference arrays from ``docs/data``
+    rather than downloading them from the published branch, so ``make note-test``
+    works offline and checks the working tree instead of the last release.  Its
+    stored error figures were also stale and have been refreshed
+*   collapse the per-backend test files.  ``test_jit.py``/``test_nojit.py`` and
+    ``test_jit_abcd.py``/``test_nojit_abcd.py`` became ``test_mie.py`` and
+    ``test_abcd.py`` for the high-level API, which needs one copy because
+    ``core.py`` has no backend-specific code, plus ``test_kernels.py`` for the
+    kernel-level tests, which the ``kernels`` fixture runs against both backends
+    in one process.  All 74 distinct test names are preserved, and the merge picks
+    up what had drifted between the two halves: an extra MIEV0 conducting case,
+    four extra ``qext`` assertions, and both spellings of a perfectly conducting
+    index.  Shared reference implementations moved to ``tests/reference.py``
+*   drop the ``MIEPYTHON_RUN_MIE_SPEED`` switch and ``test_mie_backend_speed.py``.
+    Nothing ever set that variable, so the three real assertions in that file --
+    a backend agreement check over 4000 random particles and 361 angles -- had
+    never run, while the four assertions it also gated were tautologies
+    (``elapsed > 0``).  The agreement check moved to ``test_backend_parity.py``
+    where it always runs and costs about a tenth of a second, and the speedup
+    report it printed became ``benchmark_efficiencies.py --compare``, which
+    ``make speed`` now calls
+*   the benchmark scripts ``test_jit_speed.py`` and ``test_nojit_speed.py`` became
+    one ``tests/benchmark_efficiencies.py``.  They timed at import rather than in a
+    test function, so pytest spent about seven seconds running benchmarks during
+    collection while collecting nothing; a full test pass is now much quicker.
+    They also both timed whichever backend happened to be bound, so the JIT-named
+    one could report pure-python speed.  ``make speed`` runs the single script once
+    per backend
+*   add ``tests/test_backend_parity.py``, which compares the two kernel sets
+    directly -- signatures and values -- in a single process, and merge the
+    ``test_*_D.py`` pair into one ``test_D.py`` driven by a ``kernels`` fixture
+    that parametrizes over both backends.  Tests written this way need only one
+    copy instead of a JIT/no-JIT pair
+*   test ``monte_carlo.py``, which had no tests at all, and drop the unreachable
+    index clamp in ``generate_mie_costheta``: ``numpy.random.random`` draws from
+    [0, 1), so the index can never run off the table.  A test forces the largest
+    float below one to show that.  The sampler is checked against physics rather
+    than against itself: the mean of the drawn cosines reproduces the asymmetry
+    parameter g, computed by a completely separate path, and the empirical
+    distribution follows the inverse-transform table.  With this the whole package
+    is covered, so ``fail_under`` is now 100
+*   record that ``cdf`` overshoots one.  It sums ``i_unpolarized / num`` instead of
+    multiplying by the true spacing 2/(num-1), so the last value is about
+    1 + 1.3/num: at the num=20 of ``docs/06_random_deviates.ipynb`` the cumulative
+    distribution reaches 1.067 even though the docstring promises a maximum of 1.
+    A test pins the 1/num convergence so the quadrature cannot quietly change
+*   test the kernel paths an ordinary Mie call never reaches, taking both
+    ``mie_jit.py`` and ``mie_nojit.py`` to 100%.  ``_D_upwards`` is kept for
+    comparison but ``D_calc`` no longer selects it, so it is now checked against
+    SciPy where it is valid and against ``_D_downwards``.  Also covered: the
+    overflow rescale inside ``_psi_downwards``, which a small argument triggers and
+    which the normalisation afterwards has to undo exactly; ``cn_dn`` for a sphere
+    of no size; and the ``m=0`` shorthand for a perfect conductor, now shown to be
+    identical to passing ``1-10000j``.  Every module except ``monte_carlo.py`` is
+    fully covered, with no partial branches left anywhere
+*   test the scattered-only fields and the explicit term count in ``field.py``,
+    taking it to 100%.  Nothing had ever called a near-field routine with
+    ``include_incident=False`` for H, or passed ``n_pole`` at all.  Outside the
+    sphere the total field minus the scattered field is now checked against an
+    incident plane wave written out independently of miepython, and inside the
+    sphere ``include_incident`` is confirmed to make no difference
+*   test the array dispatch and error paths in ``core.py``, taking it to 100%.
+    The ``RuntimeError`` for mismatched ``m`` and ``x`` lengths, the one for array
+    input without ``n_pole``, the ``internal`` variants of ``coefficients`` and the
+    mixed scalar-and-array calls were all untested, as was the rejection of an
+    unknown normalization.  Every array result is now checked against the
+    equivalent scalar calls
+*   fix ``S1_S2`` rejecting a list or an integer array of angles under numba.  The
+    kernel is declared for ``float64[:]``, so ``S1_S2(m, x, [0, 1])`` worked with the
+    JIT off and raised ``TypeError`` with it on; ``core.py`` now coerces the angles
+    once, at the boundary, so both backends take the same arguments
+*   test the missing-SciPy path in ``__init__.py`` and the remaining parts of
+    ``rayleigh.py``, taking them from 52% and 72% to 100%; the total reaches 95%.
+    The SciPy fallback is what keeps the package usable in JupyterLite and had never
+    been exercised: the tests re-import the package behind an import hook, check the
+    placeholders name themselves and chain the original error, and confirm that a
+    failure other than SciPy still propagates.  ``rayleigh``'s physical-units
+    wrappers, all thirteen normalization spellings and its error paths were also
+    untested
+*   record that ``rayleigh``'s normalization closes only to O(x**2): ``qsca`` in
+    ``efficiencies_mx`` stops at x**4 while the ``a1`` used by ``S1_S2`` carries an
+    x**5 term, so the 'one' normalization integrates to 1 + 0.07 x**2 rather than 1.
+    A test pins that order so extending one expansion without the other shows up
+*   test ``vsh.py`` and ``util.py``, which the new coverage run showed at 60% and
+    55%.  Both are now at 100% branch coverage, and the total rises from 86% to
+    91%.  The four ``M_*_array``/``N_*_array`` helpers, the ``deg=True`` angle
+    paths and the small-argument series in ``N_base`` had no tests at all.  One of
+    the new tests checks ``vsh.py`` against ``field.py``, which holds a second copy
+    of the same vector spherical harmonics, so the two can no longer drift apart
+*   measure coverage.  ``make coverage`` runs the suite once per backend and
+    combines the results, and a CI job publishes the HTML report as an artifact.
+    Naive coverage is misleading here: coverage.py cannot see inside numba's
+    compiled functions, so ``mie_jit.py`` reports 11% no matter how well it is
+    tested.  The second pass therefore sets ``NUMBA_DISABLE_JIT=1``, which runs the
+    njit bodies as plain Python and lifts that file to 96%.  The combined figure is
+    86% with branch coverage, and ``fail_under`` is set to 84 as a floor to ratchet
+    upward.  Two tests that deliberately assert numba is compiled were rewritten to
+    hold in either mode rather than being skipped, so all three modes stay green
+*   widen the CI matrix.  It covered ubuntu on Python 3.10 and 3.14 only, and
+    because it also ran just two test files, most of the suite had never executed
+    on the oldest supported Python.  Linux now runs every version the classifiers
+    promise, 3.10 through 3.14, and macOS and Windows run both ends of that range,
+    since numba holds the platform-specific half of the package.  numba 0.66 ships
+    wheels for all of those combinations
+*   discover example scripts and notebooks relative to the test file rather than
+    the working directory.  ``test_all_examples.py`` globbed a relative path, so a
+    run started anywhere but the repository root collected nothing and reported
+    success; it now asserts that it found something
+*   CI now lints.  It only ran pytest, so a pull request with formatting or lint
+    errors passed clean and the checks in ``make rcheck`` were enforced on nobody.
+    A new job runs ``make lint``, the same target a release check uses, through uv,
+    so the list of checks lives in the Makefile alone and cannot drift from CI
+*   add a ``make lint`` target covering ruff, black, pylint, rstcheck, yamllint,
+    check-manifest and pyroma, and have ``make rcheck`` delegate to it.  That also
+    closes a gap: ``yaml-check`` existed but was never part of ``rcheck``, so the
+    workflow files were only ever checked by hand
+*   the ``test_jit*`` files now really exercise the numba backend.  ``_backend.py``
+    binds its kernels the first time ``miepython`` is imported, so setting
+    ``MIEPYTHON_USE_JIT`` inside a test module only worked when that module
+    happened to import the package first.  In a full ``make test`` run something
+    always imported it earlier with the JIT off, so those files silently retested
+    the pure-python kernels and passed.  ``tests/conftest.py`` now reads the
+    backend that actually got bound and skips the files belonging to the other
+    one, and ``make test`` runs the suite once per backend.  The backend-agnostic
+    tests run under both, which is new coverage for them.  New ``make test-jit``
+    and ``make test-nojit`` targets run a single pass, and CI now runs the whole
+    suite per backend rather than one file each
+*   raise a clear error instead of returning ``inf`` or ``nan`` when a scattering
+    function is asked to normalise against a sphere that does not scatter.  A
+    sphere whose index matches its surroundings gave ``i_unpolarized`` values of
+    ``inf`` for the 'albedo', 'one' and '4pi' normalizations and a bare
+    ``ZeroDivisionError`` for 'qext'.  The 'wiscombe', 'bohren' and 'qsca'
+    choices do not divide by an efficiency and still work
+*   ``efficiencies_mx`` returns zero rather than ``nan`` for ``qback`` when the
+    size parameter is zero.  The small-sphere form of ``qback`` is 0/0 there,
+    although its limit is zero, and a single zero in an array of size parameters
+    used to leave a ``nan`` behind
+*   fix ``util.cartesian_to_spherical``, which raised on array input because of a
+    scalar ``if r != 0`` test.  It now broadcasts its three arguments, reports
+    theta as zero at the origin, and clips ``z/r`` so rounding cannot push the
+    arccos argument out of range.  ``field.py`` dropped its private duplicate of
+    this routine
+*   fix ``util`` exporting ``_all_`` instead of ``__all__``, and list
+    ``phasor_str_scalar`` alongside the rest
+*   the near-field routines keep two more terms than Wiscombe's criterion.  That
+    criterion truncates the scattered series, which converges faster than the
+    field evaluated right at the sphere surface: the tangential E and H mismatch
+    across the boundary drops from 1.5e-5 to 3.2e-6, and the median disagreement
+    with scattnlay over a 121x121 slice falls from 1.1e-11 to 3.3e-14.  Further
+    orders gain almost nothing once ``psi_n`` is computed stably, so two is where
+    it stops.  The scattering quantities are untouched, and ``e_far`` still uses
+    the criterion unchanged.  ``miepython.core.wiscombe_terms`` names the count
+*   ``pi_tau`` now fills ``tau`` for the highest order.  It had always left the
+    last entry zero, which was hidden by the ``an_bn`` padding above and would
+    have silently dropped a term once the padding went away.  ``n_pole`` may now
+    address the highest order, which the old bounds check rejected
+
+3.2.0 (03/06/2026)
+-------------------
+*   fix error in E & H calculations in the near field when y≠0 (thanks @dorianherle)
+*   add regression test
+
+3.1.0 (02/07/2026)
+-------------------
+*   add near-field E and H field APIs, fix boundary continuity/medium handling, and expand validation tests
+*   add field calculation utilities, field module cleanup/help text improvements, and precomputed E/H reference data (via scattnlay)
+*   improve performance: ~20% speedups in Mie backends and faster near-field calculations; add speed benchmarks
+*   documentation updates: new/updated notebooks (boundary conditions, 2D fields, performance), clarified conventions
+*   refresh docs/README visuals and assets; add custom CSS for docs images
+*   jupyterlite/RTD updates: config moves, build modernizations, and avoid numba install in JupyterLite
+*   packaging/CI: pyproject and requirements cleanup, improved PyPI workflow, updated citation automation/config
+*   misc cleanups: remove unused files/images, minor typos, Makefile and docs config tidy-ups, CITATION.cff refresh
+
+3.0.5 (1/2/2026)
+-------------------
+*   fix versioning
+
+3.0.4 (1/2/2026)
+-------------------
+*   Host jupyterlite instance of github
+*   improve citation guidelines
+*   add test for unpolarized intensity methods
+*   begin work on local electrical and magnetic fields
+*   using black now with longer lines
+*   improved packaging
+*   improve readme
+
+3.0.3
+-------------------
+*   skipped
+
+3.0.2 (5/25/2025)
+-------------------
+*   fix version number
+
+3.0.1 (5/25/2025)
+-------------------
+*   fix JIT regression (thanks @avgeiss)
+*   clarify polarization in docstrings
+*   improve README.rst
+*   fix git branches
+*   rename mie.mie_scalar to mie.single_sphere
+*   rename small_mie_sphere to small_sphere
+*   rename small_conducting_mie to small_conducting_sphere
+*   rationalize importing of jit and non-jit code
+*   add test_jit_speed.py and test_nojit_speed.py
+
+3.0.0 (3/16/2025)
+-------------------
+*   breaking api changes
+*   api is more sane: mie.efficiencies() instead of miepython.ez_mie()
+*   use core.py to cleanly separate jit and non-jit code
+*   new function to calculate mie coefficients inside sphere
+*   new function to calculate E-fields near and far from sphere (only works in far-field)
+*   new rayleigh.py
+*   new vsh.py to calculate vector spherical harmonics
+*   new util.py for printing complex numbers
+*   new bessel.py for complete spherical bessel function support
+*   put Monte Carlo routines into their own file
+*   use black for python formatting
+*   update all notebooks to use new api
+*   add more tests
+
+
+2.5.5 (12/01/2025)
+-------------------
+*   add support for specific spherical modes
+*   only branch is now 'main'
+
+2.5.4 (05/07/2024)
+-------------------
+*   add auto-dating in CITATION
+*   add python 3.12
+*   add ruff, pylint config
+*   simplify mie_cdf and fix notebook
+*   set 3.7 as earliest python version
+
+v2.5.3 (8/5/2023)
+-------------------
+*   conda-forge fails because test files are not included
+
+v2.5.1 (8/5/2023)
+-------------------
+*   change tests to accommodate conda-forge
+*   require python>=3.9 to accommodate latest numba
+*   get rid of tox
+
+v2.5.0 (8/4/2023)
+-------------------
+*   fix scattering function for very small spheres
+
+v2.4.0 (6/10/2023)
+-------------------
+*   add mie_phase_matrix() to calculate scattering (Mueller) matrix
+
+v2.3.2
+-------------------
+*   fix typo in README.rst that prevented pypi upload
+*   add CITATION.cff to base level of miepython repository
+
+v2.3.1
+-------------------
+*   add DOI for citation purposes
+
+v2.3.0
+-------------------
+*   add optional argument to change scattering function normalization
+*   document normalization in new notebook
+*   store data in correct place
+*   store version __init__.py so scripts can query it
+*   fix typo in header of gold sphere example script
+*   remove workaround for older Sphinx version
+
+v2.2.3 (1/26/2022)
+------------------
+*   update _mie_An_Bn in miepython_nojit
+*   store data in module so github testing passes
+*   fix build of API documentation on miepython.readthedocs.io
+*   only test back to python 3.9 because importlib.resources
+*   3.9 is only needed for a few of the jupyter notebooks
+
+v2.2.2 (1/25/2022)
+------------------
+*   modify _mie_An_Bn to allocate and return An and Bn
+*   fix minor packaging issue
+*   explicitly define encoding when opening files
+*   explicitly use .readthedocs.yaml to build docs
+*   use rtd theme for docs
+*   add docs/requirements
+*   restrict Jinja2 to 2.11.3 in docs/requirements
+
+v2.2.1 (9/5/2021)
+-----------------
+*   create pure python packages
+*   include wheel file
+*   package as python3 only
+
+2.1.0 (05/22/21)
+----------------
+*   fix case when scalar angle used with mie_S1_S2()
+*   add pypi badge
+*   fix notebook testing
+*   thanks to @zmoon for the following changes:
+*   add requirements-dev.txt
+*   add example script testing
+*   add workflow testing
+*   fix Au/Ag error
+*   fix examples that use refractiveindex.info
+*   add testing badge
+
+2.0.1 (04/25/21)
+----------------
+*   fix packaging mistake
+
+2.0.0 (04/25/21)
+----------------
+*   use numba for 10-700X speed improvement
+*   thanks to @jbecca and @pscicluna for their help
+*   add performance notebook
+*   add automated notebook checking
+*   test more code
+
+1.3.3 (03/21/21)
+----------------
+*   colab badge and link
+*   change theme for sphinx documentation
+*   add requirements.txt to avoid installing sphinx
+*   fix restructured text errors
+*   advise everywhere to `pip install --user miepython` to avoid permission problems
+
+1.3.2 (01/13/21)
+----------------
+*   add ez_mie(m, d, lambda0)
+*   add ez_intensities(m, d, lambda0, mu)
+*   fix formatting
+*   fix api autodoc
+*   specify newer pythons
+*   better install instructions
+
+1.3.1 (03/30/20)
+----------------
+*   improve docstrings
+*   use Sphinx documentation
+*   host docs on readthedocs.io
+*   use tox
+
+1.3.0 (02/19/19)
+----------------
+*   fix calculations for small spheres (x<0.05)
+*   added notebook doc/09_backscattering.ipynb
+*   general tweaks to documentation throughout
+*   improved README.md
+
+1.2.0. (02/08/19)
+-----------------
+*   fix bug so that large sphere calculations work correctly
+*   add tests for large spheres
+*   add tests for backscattering efficiency
+*   add documentation notebook for large spheres
+*   add direct links to documentation
+*   finish fixing fractions in notebooks
+*   improve README.md
+
+1.1.1. (06/25/18)
+------------------
+*   fix github rendering of fractions in equations
+*   add developer instructions
+*   fix fractions for github
+*   add missing doc files found my check-manifest
+*   setup.py fixes suggested by pyroma
+*   pep8 compliance and delinting using pylint
+*   add missing doc files found my check-manifest
+*   setup.py fixes suggested by pyroma
+*   pep8 compliance and delinting using pylint
+*   update version
+*   add notebook doc/08_large_spheres.ipynb
+
+1.1.0 (03/02/2018)
+------------------
+*   update version
+*   initial commit of 04_rayleigh.ipynb
+*   renamed doc files
+*   use new functions from miepython
+*   omit low level tests
+*   add __author__ and __version__
+*   add i_par, i_per, i_unpolarized, and hide private functions
+*   rename doc files
+*   add quantitative comparisons of angular scattering
+*   tweak verbiage
+*   ignore more
+*   initial commit
+*   more cleanup
+*   ignore dist files
+*   minor reorg of contents
+*   fix typos, add more refraction stuff
+*   Changes to match PEP8 style
+*   add minor comments, fix typos
+
+1.0.0 (08/27/2017)
+------------------
+*   Added docs in form of Jupyter notebooks
+
+0.4.2 (08/26/2017)
+------------------
+*   messed up github release 0.4.1
+
+0.4.1 (08/26/2017)
+------------------
+*   fix typo
+
+0.4.0 (08/26/2017)
+------------------
+*   update README to include basic testing
+*   mie(m,x) work automatically with arrays
+*   adding MANIFEST.in so examples get included
+
+0.3.2 (07/07/2017)
+------------------
+*   update README, bump to 0.3.2
+*   Fix examples so they work.
+
+0.3.1 (07/07/2017)
+------------------
+*   Bump version.
+*   Add functions to __init__.py.
+
+0.3.0 (07/07/2017)
+------------------
+*   Update README again.
+*   Update README.
+*   More packaging issues.
+*   Only include normalized scattering functions.
+*   Tweak setup.py and add .gitignore.
+*   Rename README.
+*   Add small sphere calc for S1 and S2.
+*   Label tests with MIEV0 cases.
+*   Rename example.
+*   Add gold sphere example.
+*   Add a few example programs.
+*   Remove unused tests.
+*   Remove extraneous ; simplify test.py, add tests.
+*   Simplify test suite management.
+*   Rename awkward test_miepython to just test.
+*   Reorganize tests, add S1 & S2 test.
+*   Added capabilities. Barely working test suite.
+*   Add more tests that fail.
+*   Move files around.
+*   Add boilerplate files and start adding unit tests.
+*   Rename to miepython.
+*   Initial check in.

{miepython-3.1.0 → miepython-3.3.0}/CITATION.cff

@@ -2,9 +2,9 @@ cff-version: 1.2.0
 type: software
 message: If you use this software, please cite it as below.
 title: 'miepython: Pure python calculation of Mie scattering'
-version: 3.0.5
+version: 3.2.0
 doi: 10.5281/zenodo.7949264
-date-released: '2026-01-03'
+date-released: '2026-03-06'
 url: https://doi.org/10.5281/zenodo.7949264
 repository-code: https://github.com/scottprahl/miepython
 license: MIT
@@ -33,7 +33,7 @@ preferred-citation:
   type: software
   title: 'miepython: Pure python calculation of Mie scattering'
   year: 2026
-  version: 3.0.5
+  version: 3.2.0
   doi: 10.5281/zenodo.7949264
   url: https://doi.org/10.5281/zenodo.7949264
   authors:

miepython-3.3.0/MANIFEST.in

@@ -0,0 +1,12 @@
+# Core package files
+include LICENSE.txt
+include README.rst
+include CHANGELOG.rst
+include CITATION.cff
+
+# Package data needed at runtime
+include miepython/data/*.txt
+
+# setuptools already picks up tests/test*.py, but conftest.py selects the backend
+# each test file needs, so the shipped tests are wrong without it
+recursive-include tests *.py