microlive 1.0.8__tar.gz → 1.0.9__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (26) hide show
  1. {microlive-1.0.8 → microlive-1.0.9}/PKG-INFO +16 -14
  2. {microlive-1.0.8 → microlive-1.0.9}/microlive/__init__.py +1 -1
  3. {microlive-1.0.8 → microlive-1.0.9}/pyproject.toml +17 -15
  4. {microlive-1.0.8 → microlive-1.0.9}/.gitignore +0 -0
  5. {microlive-1.0.8 → microlive-1.0.9}/LICENSE +0 -0
  6. {microlive-1.0.8 → microlive-1.0.9}/README.md +0 -0
  7. {microlive-1.0.8 → microlive-1.0.9}/microlive/data/__init__.py +0 -0
  8. {microlive-1.0.8 → microlive-1.0.9}/microlive/data/icons/__init__.py +0 -0
  9. {microlive-1.0.8 → microlive-1.0.9}/microlive/data/icons/icon_micro.png +0 -0
  10. {microlive-1.0.8 → microlive-1.0.9}/microlive/data/models/__init__.py +0 -0
  11. {microlive-1.0.8 → microlive-1.0.9}/microlive/gui/__init__.py +0 -0
  12. {microlive-1.0.8 → microlive-1.0.9}/microlive/gui/app.py +0 -0
  13. {microlive-1.0.8 → microlive-1.0.9}/microlive/gui/main.py +0 -0
  14. {microlive-1.0.8 → microlive-1.0.9}/microlive/gui/micro_mac.command +0 -0
  15. {microlive-1.0.8 → microlive-1.0.9}/microlive/gui/micro_windows.bat +0 -0
  16. {microlive-1.0.8 → microlive-1.0.9}/microlive/imports.py +0 -0
  17. {microlive-1.0.8 → microlive-1.0.9}/microlive/microscopy.py +0 -0
  18. {microlive-1.0.8 → microlive-1.0.9}/microlive/ml_spot_detection.py +0 -0
  19. {microlive-1.0.8 → microlive-1.0.9}/microlive/pipelines/__init__.py +0 -0
  20. {microlive-1.0.8 → microlive-1.0.9}/microlive/pipelines/pipeline_FRAP.py +0 -0
  21. {microlive-1.0.8 → microlive-1.0.9}/microlive/pipelines/pipeline_folding_efficiency.py +0 -0
  22. {microlive-1.0.8 → microlive-1.0.9}/microlive/pipelines/pipeline_particle_tracking.py +0 -0
  23. {microlive-1.0.8 → microlive-1.0.9}/microlive/pipelines/pipeline_spot_detection_no_tracking.py +0 -0
  24. {microlive-1.0.8 → microlive-1.0.9}/microlive/utils/__init__.py +0 -0
  25. {microlive-1.0.8 → microlive-1.0.9}/microlive/utils/device.py +0 -0
  26. {microlive-1.0.8 → microlive-1.0.9}/microlive/utils/resources.py +0 -0
{microlive-1.0.8 → microlive-1.0.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: microlive
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- Version: 1.0.8
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+ Version: 1.0.9
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  Summary: Live-cell microscopy image analysis and single-molecule measurements
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  Project-URL: Homepage, https://github.com/ningzhaoAnschutz/microlive
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  Project-URL: Documentation, https://github.com/ningzhaoAnschutz/microlive/blob/main/docs/user_guide.md
@@ -28,41 +28,43 @@ Classifier: Topic :: Scientific/Engineering :: Image Processing
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  Classifier: Topic :: Scientific/Engineering :: Visualization
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  Requires-Python: >=3.10
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  Requires-Dist: big-fish>=0.6
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+ Requires-Dist: bioio-base==3.1.0
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  Requires-Dist: bioio-lif>=1.2
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- Requires-Dist: bioio<3.2,>=3.0
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+ Requires-Dist: bioio==3.1.0
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  Requires-Dist: biopython>=1.81
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  Requires-Dist: brokenaxes
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  Requires-Dist: cellpose>=3.0
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- Requires-Dist: dask>=2024.1
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+ Requires-Dist: dask==2024.8.0
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+ Requires-Dist: distributed==2024.8.0
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  Requires-Dist: dna-features-viewer>=3.1
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  Requires-Dist: fpdf>=1.7
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  Requires-Dist: imagecodecs
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  Requires-Dist: imageio>=2.34
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  Requires-Dist: joblib>=1.3
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  Requires-Dist: joypy
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- Requires-Dist: llvmlite>=0.43
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+ Requires-Dist: llvmlite==0.43.0
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  Requires-Dist: matplotlib-scalebar
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- Requires-Dist: matplotlib>=3.9
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+ Requires-Dist: matplotlib==3.9.2
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  Requires-Dist: natsort
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- Requires-Dist: numba>=0.60
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- Requires-Dist: numpy<2.0,>=1.26
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+ Requires-Dist: numba==0.60.0
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+ Requires-Dist: numpy==1.26.4
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  Requires-Dist: opencv-python-headless>=4.9
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  Requires-Dist: openpyxl>=3.1
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- Requires-Dist: pandas>=2.2
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+ Requires-Dist: pandas==2.2.2
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  Requires-Dist: pillow>=10.0
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  Requires-Dist: psutil
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  Requires-Dist: pydantic>=2.0
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  Requires-Dist: pyqt5>=5.15
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  Requires-Dist: pystackreg>=0.2.8
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  Requires-Dist: pyyaml>=6.0
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- Requires-Dist: readlif>=0.6.5
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+ Requires-Dist: readlif==0.6.5
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  Requires-Dist: roifile
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- Requires-Dist: scikit-image>=0.24
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- Requires-Dist: scikit-learn>=1.5
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- Requires-Dist: scipy>=1.13
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- Requires-Dist: seaborn>=0.13
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+ Requires-Dist: scikit-image==0.24.0
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+ Requires-Dist: scikit-learn==1.5.2
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+ Requires-Dist: scipy==1.13.1
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+ Requires-Dist: seaborn==0.13.2
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  Requires-Dist: snapgene-reader>=0.1
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- Requires-Dist: statsmodels>=0.14
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+ Requires-Dist: statsmodels==0.14.4
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  Requires-Dist: tifffile>=2024.1
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  Requires-Dist: tqdm>=4.66
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  Requires-Dist: trackpy>=0.6
{microlive-1.0.8 → microlive-1.0.9}/microlive/__init__.py RENAMED
@@ -23,7 +23,7 @@ Authors:
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  Nathan L. Nowling, Brian Munsky, Ning Zhao
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  """
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- __version__ = "1.0.8"
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+ __version__ = "1.0.9"
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  __author__ = "Luis U. Aguilera, William S. Raymond, Rhiannon M. Sears, Nathan L. Nowling, Brian Munsky, Ning Zhao"
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  # Package name (for backward compatibility)
{microlive-1.0.8 → microlive-1.0.9}/pyproject.toml RENAMED
@@ -47,25 +47,26 @@ classifiers = [
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  ]
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  dependencies = [
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- # Core scientific stack - pinned to known compatible versions
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- "numpy>=1.26,<2.0",
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- "pandas>=2.2",
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- "scipy>=1.13",
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- "scikit-image>=0.24",
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- "scikit-learn>=1.5",
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- "matplotlib>=3.9",
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+ # Core scientific stack - EXACT versions to prevent resolution loops
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+ "numpy==1.26.4",
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+ "pandas==2.2.2",
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+ "scipy==1.13.1",
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+ "scikit-image==0.24.0",
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+ "scikit-learn==1.5.2",
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+ "matplotlib==3.9.2",
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  "matplotlib-scalebar",
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- "seaborn>=0.13",
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- "statsmodels>=0.14",
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+ "seaborn==0.13.2",
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+ "statsmodels==0.14.4",
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  # Image I/O
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  "tifffile>=2024.1",
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  "imagecodecs",
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  "imageio>=2.34",
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  "Pillow>=10.0",
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- "bioio>=3.0,<3.2",
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+ "bioio==3.1.0",
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+ "bioio-base==3.1.0",
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  "bioio-lif>=1.2",
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- "readlif>=0.6.5",
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+ "readlif==0.6.5",
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  "opencv-python-headless>=4.9",
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  "roifile",
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@@ -77,11 +78,12 @@ dependencies = [
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  "trackpy>=0.6",
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  "big-fish>=0.6",
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- # Acceleration - pinned for compatibility
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- "numba>=0.60",
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- "llvmlite>=0.43",
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+ # Acceleration - EXACT versions to prevent numba/llvmlite conflicts
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+ "numba==0.60.0",
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+ "llvmlite==0.43.0",
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  "joblib>=1.3",
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- "dask>=2024.1",
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+ "dask==2024.8.0",
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+ "distributed==2024.8.0",
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  # Utilities
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  "tqdm>=4.66",
{microlive-1.0.8 → microlive-1.0.9}/.gitignore RENAMED
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{microlive-1.0.8 → microlive-1.0.9}/LICENSE RENAMED
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{microlive-1.0.8 → microlive-1.0.9}/README.md RENAMED
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