microlive 1.0.11__tar.gz → 1.0.13__tar.gz

{microlive-1.0.11 → microlive-1.0.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: microlive
-Version: 1.0.11
+Version: 1.0.13
 Summary: Live-cell microscopy image analysis and single-molecule measurements
 Project-URL: Homepage, https://github.com/ningzhaoAnschutz/microlive
 Project-URL: Documentation, https://github.com/ningzhaoAnschutz/microlive/blob/main/docs/user_guide.md
@@ -33,7 +33,7 @@ Requires-Dist: bioio-lif>=1.2
 Requires-Dist: bioio==3.1.0
 Requires-Dist: biopython>=1.81
 Requires-Dist: brokenaxes
-Requires-Dist: cellpose>=3.0
+Requires-Dist: cellpose==3.1.0
 Requires-Dist: dask==2024.8.0
 Requires-Dist: distributed==2024.8.0
 Requires-Dist: dna-features-viewer>=3.1

{microlive-1.0.11 → microlive-1.0.13}/microlive/__init__.py

@@ -23,7 +23,7 @@ Authors:
     Nathan L. Nowling, Brian Munsky, Ning Zhao
 """
 
-__version__ = "1.0.11"
+__version__ = "1.0.13"
 __author__ = "Luis U. Aguilera, William S. Raymond, Rhiannon M. Sears, Nathan L. Nowling, Brian Munsky, Ning Zhao"
 
 # Package name (for backward compatibility)

{microlive-1.0.11 → microlive-1.0.13}/microlive/microscopy.py

@@ -1914,9 +1914,14 @@ class Cellpose():
         # Initialize Cellpose model
         if self.pretrained_model is None:
             if self.model_type == 'cyto3':
-                model = denoise.CellposeDenoiseModel(gpu=use_gpu, model_type="cyto3",
-                                     restore_type="denoise_cyto3")
-                logging.debug('Cellpose: Model cyto3 loaded')
+                try:
+                    model = denoise.CellposeDenoiseModel(gpu=use_gpu, model_type="cyto3",
+                                         restore_type="denoise_cyto3")
+                    logging.debug('Cellpose: Model cyto3 loaded')
+                except Exception as e:
+                    logging.warning(f"Failed to load cyto3 model: {e}. Falling back to 'cyto2'.")
+                    self.model_type = 'cyto2'
+                    model = models.Cellpose(gpu=use_gpu, model_type='cyto2')
             else:
                 model = models.Cellpose(gpu=use_gpu, model_type=self.model_type)  # model_type = 'cyto' or 'nuclei'
         else:

{microlive-1.0.11 → microlive-1.0.13}/pyproject.toml

@@ -74,7 +74,7 @@ dependencies = [
     "PyQt5>=5.15",
     
     # ML/Analysis - Cellpose pulls PyTorch automatically
-    "cellpose>=3.0",
+    "cellpose==3.1.0",
     "trackpy>=0.6",
     "big-fish>=0.6",