microlive 1.0.0__tar.gz

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Files changed (28) hide show
  1. microlive-1.0.0/.gitignore +53 -0
  2. microlive-1.0.0/LICENSE +674 -0
  3. microlive-1.0.0/PKG-INFO +298 -0
  4. microlive-1.0.0/README.md +215 -0
  5. microlive-1.0.0/microlive/__init__.py +44 -0
  6. microlive-1.0.0/microlive/data/__init__.py +0 -0
  7. microlive-1.0.0/microlive/data/icons/__init__.py +0 -0
  8. microlive-1.0.0/microlive/data/icons/icon_micro.png +0 -0
  9. microlive-1.0.0/microlive/data/models/__init__.py +0 -0
  10. microlive-1.0.0/microlive/data/models/spot_detection_cnn.pth +0 -0
  11. microlive-1.0.0/microlive/gui/__init__.py +1 -0
  12. microlive-1.0.0/microlive/gui/app.py +16000 -0
  13. microlive-1.0.0/microlive/gui/main.py +54 -0
  14. microlive-1.0.0/microlive/gui/micro_mac.command +22 -0
  15. microlive-1.0.0/microlive/gui/micro_windows.bat +28 -0
  16. microlive-1.0.0/microlive/imports.py +209 -0
  17. microlive-1.0.0/microlive/microscopy.py +13321 -0
  18. microlive-1.0.0/microlive/ml_spot_detection.py +252 -0
  19. microlive-1.0.0/microlive/pipelines/__init__.py +17 -0
  20. microlive-1.0.0/microlive/pipelines/pipeline_FRAP.py +1225 -0
  21. microlive-1.0.0/microlive/pipelines/pipeline_folding_efficiency.py +297 -0
  22. microlive-1.0.0/microlive/pipelines/pipeline_particle_tracking.py +489 -0
  23. microlive-1.0.0/microlive/pipelines/pipeline_particle_tracking_old.py +153 -0
  24. microlive-1.0.0/microlive/pipelines/pipeline_spot_detection_no_tracking.py +368 -0
  25. microlive-1.0.0/microlive/utils/__init__.py +13 -0
  26. microlive-1.0.0/microlive/utils/device.py +99 -0
  27. microlive-1.0.0/microlive/utils/resources.py +60 -0
  28. microlive-1.0.0/pyproject.toml +233 -0
microlive-1.0.0/.gitignore ADDED
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+ .DS_Store
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+ # Ignore folders
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+ Output/
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+ .ipynb_checkpoints
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+ __pycache__/
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+ .vscode
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+ temp/
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+ config.yml
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+ merged
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+ dataBases/
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+ config
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+ **/[C]onfig*
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+ dataframe.csv
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+ temp_*
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+ ~$*
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+ Figure_Distributions_*
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+ out.txt
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+ output.txt
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+ analyses/
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+ analyses_*
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+ output__*
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+ slurm-*
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+ out-*
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+ masks_*
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+ mask_*
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+ tests/
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+ filtered_images_*/
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+ results*/
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+ kk*
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+ test_simulation/
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+ database*
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+ OneDrive*/
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+ src/__pycache__/
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+ *.tif
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+ *.lif
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+ *.jpg
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+ *.pdf
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+ df*
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+ spatio_temporal_models/
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+ gene_sequences/
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+ *.csv
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+ *particle*.png
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+ dev/
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+ human_genome/
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+ *.cds.all.fa
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+ *.dna
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+ circular_RNA/
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+ *.pptx
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+ *.ppt
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+ revision/
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+ docs/paper_microlive_12112025/
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+ writing/
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+ revision_data/