microeye 2.3.7__tar.gz → 2.3.8__tar.gz

{microeye-2.3.7/src/microeye.egg-info → microeye-2.3.8}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: microeye
-Version: 2.3.7
+Version: 2.3.8
 Summary: A python toolkit for fluorescence microscopy         that features hardware control, data analysis and vizualization         for super-resolution single-molecule localization microscopy and         single-partical tracking.
 Home-page: https://github.com/samhitech/microEye
 Author: Mohammad Nour Alsamsam
@@ -70,6 +70,14 @@ The **`microEye`** is a Python toolkit for fluorescence microscopy that supports
 
 This toolkit is compatible with the [hardware](#hardware) used in our microscope. For further details, refer to the [miEye microscope paper](https://doi.org/10.1016/j.ohx.2022.e00368) and [OSF project](http://doi.org/10.17605/osf.io/j2fqy).
 
+```bash
+   __  ____              ____                ___    ____  ___ 
+  /  |/  (_)__________  / __/_ _____   _  __|_  |  |_  / ( _ )
+ / /|_/ / / __/ __/ _ \/ _// // / -_) | |/ / __/_ _/_ <_/ _  |
+/_/  /_/_/\__/_/  \___/___/\_, /\__/  |___/____(_)____(_)___/ 
+                          /___/
+```
+
 ![Package Health](https://snyk.io/advisor/python/microEye/badge.svg)
 ![Python Version](https://img.shields.io/badge/Python->=3.9_|_<3.12-blue)
 ![Package Version](https://img.shields.io/pypi/v/microEye.svg)
@@ -94,14 +102,6 @@ This toolkit is compatible with the [hardware](#hardware) used in our microscope
 ![GitHub Forks](https://img.shields.io/github/forks/samhitech/microEye.svg)
 ![GitHub Stars](https://img.shields.io/github/stars/samhitech/microEye.svg)
 
-```bash
-   __  ____              ____                ___    ____ ____
-  /  |/  (_)__________  / __/_ _____   _  __|_  |  |_  //_  /
- / /|_/ / / __/ __/ _ \/ _// // / -_) | |/ / __/_ _/_ <_ / / 
-/_/  /_/_/\__/_/  \___/___/\_, /\__/  |___/____(_)____(_)_/  
-                          /___/
-```
-
 ## Table of Contents
 
 - [The microEye](#the-microeye)

{microeye-2.3.7 → microeye-2.3.8}/README.md

@@ -6,6 +6,14 @@ The **`microEye`** is a Python toolkit for fluorescence microscopy that supports
 
 This toolkit is compatible with the [hardware](#hardware) used in our microscope. For further details, refer to the [miEye microscope paper](https://doi.org/10.1016/j.ohx.2022.e00368) and [OSF project](http://doi.org/10.17605/osf.io/j2fqy).
 
+```bash
+   __  ____              ____                ___    ____  ___ 
+  /  |/  (_)__________  / __/_ _____   _  __|_  |  |_  / ( _ )
+ / /|_/ / / __/ __/ _ \/ _// // / -_) | |/ / __/_ _/_ <_/ _  |
+/_/  /_/_/\__/_/  \___/___/\_, /\__/  |___/____(_)____(_)___/ 
+                          /___/
+```
+
 ![Package Health](https://snyk.io/advisor/python/microEye/badge.svg)
 ![Python Version](https://img.shields.io/badge/Python->=3.9_|_<3.12-blue)
 ![Package Version](https://img.shields.io/pypi/v/microEye.svg)
@@ -30,14 +38,6 @@ This toolkit is compatible with the [hardware](#hardware) used in our microscope
 ![GitHub Forks](https://img.shields.io/github/forks/samhitech/microEye.svg)
 ![GitHub Stars](https://img.shields.io/github/stars/samhitech/microEye.svg)
 
-```bash
-   __  ____              ____                ___    ____ ____
-  /  |/  (_)__________  / __/_ _____   _  __|_  |  |_  //_  /
- / /|_/ / / __/ __/ _ \/ _// // / -_) | |/ / __/_ _/_ <_ / / 
-/_/  /_/_/\__/_/  \___/___/\_, /\__/  |___/____(_)____(_)_/  
-                          /___/
-```
-
 ## Table of Contents
 
 - [The microEye](#the-microeye)

{microeye-2.3.7 → microeye-2.3.8}/src/microEye/_version.py

@@ -1,2 +1,2 @@
-version_info = (2, 3, 7)
+version_info = (2, 3, 8)
 __version__ = '.'.join(map(str, version_info))

{microeye-2.3.7 → microeye-2.3.8}/src/microEye/hardware/lasers/io_matchbox.py

@@ -74,7 +74,7 @@ class io_combiner(QtCore.QObject):
     '''TBA
     '''
 
-    DataReady = Signal(str, bytes)
+    DataReady = Signal(object, bytes)
 
     Max_Power = 0.0
 
@@ -133,10 +133,8 @@ class io_combiner(QtCore.QObject):
 
         self.ser = serial.Serial(
             baudrate=kwargs.get('baudrate', 115200),  # Default baudrate
-            port=kwargs.get('port', 'COM1'),  # Default port
             timeout=kwargs.get('timeout', 0.5),  # Default timeout
             write_timeout=kwargs.get('write_timeout', 0.5),  # Default write timeout
-            open=False,  # Start with the port closed
         )
 
         self._lock = threading.Lock()  # Add this line
@@ -740,6 +738,8 @@ class CombinerLaserWidget(Tree):
         self.set_param_value(MB_Params.FIRMWARE, self.Laser.Firmware)
         self.set_param_value(MB_Params.SERIAL, self.Laser.Serial)
 
+        self.timer.start()  # Start the timer to update stats
+
         if not self._laserSwitches:
             for idx in range(len(self.Laser.Wavelengths)):
                 if self.Laser.Wavelengths[idx] > 0:
@@ -778,7 +778,7 @@ class CombinerLaserWidget(Tree):
         '''
         if self.Laser.isOpen():
 
-            def fetch_stats():
+            def fetch_stats(event):
                 '''
                 Fetches the current readings and settings from the laser device.
                 '''
@@ -793,10 +793,11 @@ class CombinerLaserWidget(Tree):
 
                 return {}, {}
 
-            def done(readings: dict, settings: dict):
+            def done(result: tuple[dict, dict]):
                 '''
                 Updates the parameter tree with the fetched readings and settings.
                 '''
+                readings, settings = result
                 if readings:
                     for key, value in readings.items():
                         if isinstance(value, (int, float)):

{microeye-2.3.7 → microeye-2.3.8}/src/microEye/hardware/lasers/io_single_laser.py

@@ -103,10 +103,8 @@ class io_single_laser(QtCore.QObject):
 
         self.ser = serial.Serial(
             baudrate=kwargs.get('baudrate', 115200),  # Default baudrate
-            port=kwargs.get('port', 'COM1'),  # Default port
             timeout=kwargs.get('timeout', 0.5),  # Default timeout
             write_timeout=kwargs.get('write_timeout', 0.5),  # Default write timeout
-            open=False,  # Start with the port closed
         )
 
         self._lock = threading.Lock()  # Add this line
@@ -718,6 +716,8 @@ class SingleMatchBox(Tree):
         self.set_param_value(MB_Params.FIRMWARE, self.Laser.Firmware)
         self.set_param_value(MB_Params.SERIAL, self.Laser.Serial)
 
+        self.timer.start()
+
     def update_stats(self):
         '''
         Updates the statistics displayed in the MatchBox GUI.
@@ -732,7 +732,7 @@ class SingleMatchBox(Tree):
         '''
         if self.Laser.isOpen():
 
-            def fetch_stats():
+            def fetch_stats(event):
                 '''
                 Fetches the current readings and settings from the laser device.
                 '''
@@ -746,10 +746,11 @@ class SingleMatchBox(Tree):
 
                 return {}, {}
 
-            def done(readings: dict, settings: dict):
+            def done(result: tuple[dict, dict]):
                 '''
                 Updates the parameter tree with the fetched readings and settings.
                 '''
+                readings, settings = result
                 if readings:
                     for key, value in readings.items():
                         if isinstance(value, (int, float)):

{microeye-2.3.7 → microeye-2.3.8/src/microeye.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: microeye
-Version: 2.3.7
+Version: 2.3.8
 Summary: A python toolkit for fluorescence microscopy         that features hardware control, data analysis and vizualization         for super-resolution single-molecule localization microscopy and         single-partical tracking.
 Home-page: https://github.com/samhitech/microEye
 Author: Mohammad Nour Alsamsam
@@ -70,6 +70,14 @@ The **`microEye`** is a Python toolkit for fluorescence microscopy that supports
 
 This toolkit is compatible with the [hardware](#hardware) used in our microscope. For further details, refer to the [miEye microscope paper](https://doi.org/10.1016/j.ohx.2022.e00368) and [OSF project](http://doi.org/10.17605/osf.io/j2fqy).
 
+```bash
+   __  ____              ____                ___    ____  ___ 
+  /  |/  (_)__________  / __/_ _____   _  __|_  |  |_  / ( _ )
+ / /|_/ / / __/ __/ _ \/ _// // / -_) | |/ / __/_ _/_ <_/ _  |
+/_/  /_/_/\__/_/  \___/___/\_, /\__/  |___/____(_)____(_)___/ 
+                          /___/
+```
+
 ![Package Health](https://snyk.io/advisor/python/microEye/badge.svg)
 ![Python Version](https://img.shields.io/badge/Python->=3.9_|_<3.12-blue)
 ![Package Version](https://img.shields.io/pypi/v/microEye.svg)
@@ -94,14 +102,6 @@ This toolkit is compatible with the [hardware](#hardware) used in our microscope
 ![GitHub Forks](https://img.shields.io/github/forks/samhitech/microEye.svg)
 ![GitHub Stars](https://img.shields.io/github/stars/samhitech/microEye.svg)
 
-```bash
-   __  ____              ____                ___    ____ ____
-  /  |/  (_)__________  / __/_ _____   _  __|_  |  |_  //_  /
- / /|_/ / / __/ __/ _ \/ _// // / -_) | |/ / __/_ _/_ <_ / / 
-/_/  /_/_/\__/_/  \___/___/\_, /\__/  |___/____(_)____(_)_/  
-                          /___/
-```
-
 ## Table of Contents
 
 - [The microEye](#the-microeye)