miblab-plot 0.0.7__tar.gz → 0.0.9__tar.gz

{miblab_plot-0.0.7/src/miblab_plot.egg-info → miblab_plot-0.0.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: miblab-plot
-Version: 0.0.7
+Version: 0.0.9
 Summary: Plotting utilities for medical images
 Author-email: Steven Sourbron <s.sourbron@sheffield.ac.uk>
 License-Expression: Apache-2.0
@@ -16,15 +16,17 @@ Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: pillow
 Requires-Dist: numpy
 Requires-Dist: matplotlib
 Requires-Dist: tqdm
 Requires-Dist: pyvista
 Requires-Dist: scikit-image
 Requires-Dist: moviepy
-Requires-Dist: dbdicom
+Requires-Dist: imageio
 Requires-Dist: zarr
+Requires-Dist: pillow
+Requires-Dist: dbdicom
+Requires-Dist: miblab_ssa
 Dynamic: license-file
 
 # miblab-plot

{miblab_plot-0.0.7 → miblab_plot-0.0.9}/pyproject.toml

@@ -6,17 +6,19 @@ requires = ['setuptools>=61.2']
 
 [project]
 name = "miblab-plot"
-version = "0.0.7"
+version = "0.0.9"
 dependencies = [
-  'pillow',
-  'numpy',
-  'matplotlib',
-  'tqdm',
-  'pyvista',
-  'scikit-image',
-  'moviepy',
-  'dbdicom',
-  'zarr',
+    "numpy",
+    "matplotlib",
+    "tqdm",
+    "pyvista",
+    "scikit-image",
+    "moviepy",
+    "imageio",
+    "zarr",
+    "pillow",
+    "dbdicom",
+    "miblab_ssa",
 ]
 
 # optional information

{miblab_plot-0.0.7 → miblab_plot-0.0.9}/src/miblab_plot/pvplot.py

@@ -135,10 +135,20 @@ def rotating_masks_grid(
                 plotter.subplot(row, col)
                 if labels is not None:
                     plotter.add_text(str(labels[col, row]), font_size=6, color='black')
-                
-                plotter.add_mesh(surf, color='lightblue', smooth_shading=True)
-                plotter.camera_position = [pos, center, (0, 0, 1)] # Simple Up-vector
 
+                # Catch empty masks
+                if surf.n_points > 0:
+                    # Only calculate camera and add mesh if points exist
+                    distance = surf.length * 2.5
+                    center = list(surf.center)
+                    pos = center + distance * np.array(vec)
+                    
+                    plotter.add_mesh(surf, color='lightblue', smooth_shading=True)
+                    plotter.camera_position = [pos, center, (0, 0, 1)]
+                else:
+                    # Optional: Add placeholder text so you know it was empty
+                    plotter.add_text("Empty Mask", font_size=5, color='gray')
+                
         # 4. Save and Destroy
         # This is where the RAM resets to zero for the next angle
         file = os.path.join(dir_output, f"mosaic_{i:03d}.png")
@@ -228,10 +238,20 @@ def multiple_mosaic_masks_da(masks: list, directions: dict, labels, columns=None
             plotter.subplot(row, col)
             if labels is not None:
                 plotter.add_text(labels[i], font_size=6, color='black')
-            
-            plotter.add_mesh(surf, color='lightblue', smooth_shading=True)
-            plotter.camera_position = [pos, center, up]
 
+            # Catch empty masks
+            if surf.n_points > 0:
+                # Only calculate camera and add mesh if points exist
+                distance = surf.length * 2.5
+                center = list(surf.center)
+                pos = center + distance * np.array(vec)
+                
+                plotter.add_mesh(surf, color='lightblue', smooth_shading=True)
+                plotter.camera_position = [pos, center, up]
+            else:
+                # Optional: Add placeholder text so you know it was empty
+                plotter.add_text("Empty Mask", font_size=5, color='gray')
+                
         # 1. Initialize the window in the background
         plotter.show(auto_close=False, interactive=False, interactive_update=True)
         

{miblab_plot-0.0.7 → miblab_plot-0.0.9/src/miblab_plot.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: miblab-plot
-Version: 0.0.7
+Version: 0.0.9
 Summary: Plotting utilities for medical images
 Author-email: Steven Sourbron <s.sourbron@sheffield.ac.uk>
 License-Expression: Apache-2.0
@@ -16,15 +16,17 @@ Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: pillow
 Requires-Dist: numpy
 Requires-Dist: matplotlib
 Requires-Dist: tqdm
 Requires-Dist: pyvista
 Requires-Dist: scikit-image
 Requires-Dist: moviepy
-Requires-Dist: dbdicom
+Requires-Dist: imageio
 Requires-Dist: zarr
+Requires-Dist: pillow
+Requires-Dist: dbdicom
+Requires-Dist: miblab_ssa
 Dynamic: license-file
 
 # miblab-plot

{miblab_plot-0.0.7 → miblab_plot-0.0.9}/src/miblab_plot.egg-info/requires.txt

@@ -1,9 +1,11 @@
-pillow
 numpy
 matplotlib
 tqdm
 pyvista
 scikit-image
 moviepy
-dbdicom
+imageio
 zarr
+pillow
+dbdicom
+miblab_ssa