mhd-model 0.1.42__tar.gz → 0.1.43__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (104) hide show
  1. {mhd_model-0.1.42 → mhd_model-0.1.43}/PKG-INFO +2 -2
  2. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/__init__.py +1 -1
  3. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model.egg-info/PKG-INFO +2 -2
  4. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model.egg-info/requires.txt +1 -1
  5. {mhd_model-0.1.42 → mhd_model-0.1.43}/pyproject.toml +13 -6
  6. {mhd_model-0.1.42 → mhd_model-0.1.43}/LICENSE +0 -0
  7. {mhd_model-0.1.42 → mhd_model-0.1.43}/README.md +0 -0
  8. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/__init__.py +0 -0
  9. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/cli.py +0 -0
  10. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/create/__init__.py +0 -0
  11. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/create/announcement.py +0 -0
  12. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/create/create.py +0 -0
  13. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/create/neo4j_input.py +0 -0
  14. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/create/sdrf.py +0 -0
  15. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/validate/__init__.py +0 -0
  16. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/validate/announcement.py +0 -0
  17. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/validate/mhd_file.py +0 -0
  18. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/commands/validate/validate.py +0 -0
  19. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/__init__.py +0 -0
  20. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/announcement/__init__.py +0 -0
  21. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/announcement/v0_1/__init__.py +0 -0
  22. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/announcement/v0_1/legacy/__init__.py +0 -0
  23. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/announcement/v0_1/legacy/mhd2announce.py +0 -0
  24. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/announcement/v0_1/ms/__init__.py +0 -0
  25. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/announcement/v0_1/ms/mhd2announce.py +0 -0
  26. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/mhd/__init__.py +0 -0
  27. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/mhd/convertor.py +0 -0
  28. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/neo4j_enabled_data/__init__.py +0 -0
  29. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/neo4j_enabled_data/v0_1/__init__.py +0 -0
  30. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/neo4j_enabled_data/v0_1/legacy/__init__.py +0 -0
  31. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/neo4j_enabled_data/v0_1/legacy/convertor.py +0 -0
  32. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/sdrf/__init__.py +0 -0
  33. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/convertors/sdrf/mhd2sdrf.py +0 -0
  34. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/domain_utils.py +0 -0
  35. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/log_utils.py +0 -0
  36. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/mhd_client.py +0 -0
  37. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/__init__.py +0 -0
  38. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/definitions.py +0 -0
  39. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/__init__.py +0 -0
  40. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/__init__.py +0 -0
  41. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/__init__.py +0 -0
  42. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/base/__init__.py +0 -0
  43. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/base/profile.py +0 -0
  44. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/legacy/__init__.py +0 -0
  45. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/legacy/profile.py +0 -0
  46. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/ms/__init__.py +0 -0
  47. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/ms/fields.py +0 -0
  48. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/profiles/ms/profile.py +0 -0
  49. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/validation/__init__.py +0 -0
  50. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/validation/base.py +0 -0
  51. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/validation/definitions.py +0 -0
  52. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/announcement/validation/validator.py +0 -0
  53. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/__init__.py +0 -0
  54. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/__init__.py +0 -0
  55. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/__init__.py +0 -0
  56. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/base.py +0 -0
  57. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/dataset_builder.py +0 -0
  58. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/graph_nodes.py +0 -0
  59. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/graph_validation.py +0 -0
  60. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/profile.py +0 -0
  61. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/base/relationships.py +0 -0
  62. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/legacy/__init__.py +0 -0
  63. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/legacy/graph_validation.py +0 -0
  64. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/legacy/profile.py +0 -0
  65. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/ms/__init__.py +0 -0
  66. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/ms/graph_validation.py +0 -0
  67. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/profiles/ms/profile.py +0 -0
  68. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/__init__.py +0 -0
  69. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/base.py +0 -0
  70. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/profile/__init__.py +0 -0
  71. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/profile/base.py +0 -0
  72. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/profile/definition.py +0 -0
  73. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/utils.py +0 -0
  74. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/dataset/validation/validator.py +0 -0
  75. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/rules/__init__.py +0 -0
  76. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/rules/cv_definitions.py +0 -0
  77. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/rules/managed_cv_terms.py +0 -0
  78. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/rules/predefined_cv_terms.py +0 -0
  79. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/sdrf/__init__.py +0 -0
  80. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/model/v0_1/sdrf/model.py +0 -0
  81. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schema_utils.py +0 -0
  82. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/__init__.py +0 -0
  83. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/__init__.py +0 -0
  84. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/announcement-v0.1.legacy-profile.json +0 -0
  85. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/announcement-v0.1.ms-profile.json +0 -0
  86. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/announcement-v0.1.schema.json +0 -0
  87. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/common-data-model-v0.1.legacy-profile.json +0 -0
  88. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/common-data-model-v0.1.ms-profile.json +0 -0
  89. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/schemas/mhd/common-data-model-v0.1.schema.json +0 -0
  90. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/__init__.py +0 -0
  91. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/exceptions.py +0 -0
  92. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/fields.py +0 -0
  93. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/model.py +0 -0
  94. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/validation/__init__.py +0 -0
  95. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/validation/cv_term_helper.py +0 -0
  96. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/validation/definitions.py +0 -0
  97. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/validation/registry.py +0 -0
  98. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/shared/validation/validators.py +0 -0
  99. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model/utils.py +0 -0
  100. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model.egg-info/SOURCES.txt +0 -0
  101. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model.egg-info/dependency_links.txt +0 -0
  102. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model.egg-info/entry_points.txt +0 -0
  103. {mhd_model-0.1.42 → mhd_model-0.1.43}/mhd_model.egg-info/top_level.txt +0 -0
  104. {mhd_model-0.1.42 → mhd_model-0.1.43}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mhd-model
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- Version: 0.1.42
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+ Version: 0.1.43
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  Summary: MetabolomicsHub Common Data Model
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  Author-email: MetabolomicsHub Team <help@metabolomicshub.org>
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  License-Expression: Apache-2.0
@@ -14,7 +14,7 @@ Requires-Dist: email-validator>=2.2.0
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  Requires-Dist: httpx>=0.28.1
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  Requires-Dist: jsonpath-ng>=1.7.0
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  Requires-Dist: jsonschema>=4.24.0
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- Requires-Dist: mkdocs-mermaid2-plugin>=1.2.2
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+ Requires-Dist: pre-commit>=4.5.1
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  Requires-Dist: pydantic>=2.11.7
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  Requires-Dist: python-dateutil>=2.9.0.post0
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  Requires-Dist: pytz>=2025.2
@@ -1,7 +1,7 @@
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  import pathlib
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  import sys
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- __version__ = "v0.1.42"
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+ __version__ = "v0.1.43"
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  application_root_path = pathlib.Path(__file__).parent.parent
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mhd-model
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- Version: 0.1.42
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+ Version: 0.1.43
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  Summary: MetabolomicsHub Common Data Model
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  Author-email: MetabolomicsHub Team <help@metabolomicshub.org>
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  License-Expression: Apache-2.0
@@ -14,7 +14,7 @@ Requires-Dist: email-validator>=2.2.0
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  Requires-Dist: httpx>=0.28.1
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  Requires-Dist: jsonpath-ng>=1.7.0
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  Requires-Dist: jsonschema>=4.24.0
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- Requires-Dist: mkdocs-mermaid2-plugin>=1.2.2
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+ Requires-Dist: pre-commit>=4.5.1
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  Requires-Dist: pydantic>=2.11.7
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  Requires-Dist: python-dateutil>=2.9.0.post0
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  Requires-Dist: pytz>=2025.2
@@ -5,7 +5,7 @@ email-validator>=2.2.0
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  httpx>=0.28.1
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  jsonpath-ng>=1.7.0
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  jsonschema>=4.24.0
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- mkdocs-mermaid2-plugin>=1.2.2
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+ pre-commit>=4.5.1
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  pydantic>=2.11.7
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  python-dateutil>=2.9.0.post0
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  pytz>=2025.2
@@ -1,6 +1,6 @@
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  [project]
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  name = "mhd-model"
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- version = "0.1.42"
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+ version = "0.1.43"
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  description = "MetabolomicsHub Common Data Model"
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  authors = [{"name"="MetabolomicsHub Team", "email"="help@metabolomicshub.org"}]
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  license = "Apache-2.0"
@@ -14,7 +14,7 @@ dependencies = [
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  "httpx>=0.28.1",
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  "jsonpath-ng>=1.7.0",
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  "jsonschema>=4.24.0",
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- "mkdocs-mermaid2-plugin>=1.2.2",
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+ "pre-commit>=4.5.1",
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  "pydantic>=2.11.7",
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  "python-dateutil>=2.9.0.post0",
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  "pytz>=2025.2",
@@ -22,6 +22,7 @@ dependencies = [
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  "reachable>=0.7.0",
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  ]
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  [build-system]
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  requires = ["setuptools>=61.0"]
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  build-backend = "setuptools.build_meta"
@@ -50,19 +51,25 @@ mhd-cli = "mhd_model.commands.cli:cli"
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  dev = [
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  "commitizen>=4.8.3",
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  "import-linter>=2.3",
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- "mkdocs-material>=9.5.49",
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- "pre-commit>=4.3.0",
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- "ruff>=0.13.2",
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+ "mkdocs-material>=9.7.1",
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+ "pre-commit>=4.5.1",
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+ "ruff>=0.14.14",
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  ]
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  test = [
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  "pytest>=8.4.1",
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  "pytest-cov>=6.2.1",
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  ]
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+ docs = [
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+ "mkdocs-mermaid2-plugin>=1.2.2",
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+ ]
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+
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+ [tool.uv]
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+ default-groups = []
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  [tool.commitizen]
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  name = "cz_conventional_commits"
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  version_provider = "uv"
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- version = "0.1.42"
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+ version = "0.1.43"
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  tag_format = "v$major.$minor.$patch"
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  version_files = [
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  "pyproject.toml:version",
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