mgnify-pipelines-toolkit 0.0.8__tar.gz → 0.0.9__tar.gz

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  1. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/PKG-INFO +1 -1
  2. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py +2 -2
  3. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/PKG-INFO +1 -1
  4. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/pyproject.toml +1 -1
  5. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/LICENSE +0 -0
  6. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/README.md +0 -0
  7. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/__init__.py +0 -0
  8. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/__init__.py +0 -0
  9. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/amplicon_utils.py +0 -0
  10. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/are_there_primers.py +0 -0
  11. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/assess_inflection_point_mcp.py +0 -0
  12. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/assess_mcp_proportions.py +0 -0
  13. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/find_mcp_inflection_points.py +0 -0
  14. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/make_asv_count_table.py +0 -0
  15. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/remove_ambiguous_reads.py +0 -0
  16. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/rev_comp_se_primers.py +0 -0
  17. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/standard_primer_matching.py +0 -0
  18. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/shared/__init__.py +0 -0
  19. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/shared/get_subunits.py +0 -0
  20. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/shared/get_subunits_coords.py +0 -0
  21. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/shared/mapseq2biom.py +0 -0
  22. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/constants/regex_ambiguous_bases.py +0 -0
  23. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/constants/tax_ranks.py +0 -0
  24. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/SOURCES.txt +0 -0
  25. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/dependency_links.txt +0 -0
  26. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/entry_points.txt +0 -0
  27. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/requires.txt +0 -0
  28. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/top_level.txt +0 -0
  29. {mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/setup.cfg +0 -0
{mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: mgnify_pipelines_toolkit
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- Version: 0.0.8
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+ Version: 0.0.9
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  Summary: Collection of scripts and tools for MGnify pipelines
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  Author-email: MGnify team <metagenomics-help@ebi.ac.uk>
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  License: Apache Software License 2.0
{mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit/analysis/amplicon/classify_var_regions.py RENAMED
@@ -449,7 +449,7 @@ def parse_args(argv):
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  return parser.parse_args(argv)
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- def main(argv):
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+ def main(argv=None):
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  t_start = time.perf_counter() # time the run
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  args = parse_args(argv)
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  if not os.path.isdir(args.output_dir):
@@ -481,7 +481,7 @@ def main(argv):
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  if __name__ == '__main__':
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- main(sys.argv[1:])
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+ main()
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  # don't print json
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  # name the tsv file better
{mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/mgnify_pipelines_toolkit.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: mgnify_pipelines_toolkit
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- Version: 0.0.8
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+ Version: 0.0.9
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  Summary: Collection of scripts and tools for MGnify pipelines
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  Author-email: MGnify team <metagenomics-help@ebi.ac.uk>
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  License: Apache Software License 2.0
{mgnify_pipelines_toolkit-0.0.8 → mgnify_pipelines_toolkit-0.0.9}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "mgnify_pipelines_toolkit"
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- version = "0.0.8"
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+ version = "0.0.9"
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  readme = "README.md"
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  license = {text = "Apache Software License 2.0"}
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  authors = [