metaflow 2.12.36__tar.gz → 2.12.38__tar.gz

{metaflow-2.12.36/metaflow.egg-info → metaflow-2.12.38}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: metaflow
-Version: 2.12.36
+Version: 2.12.38
 Summary: Metaflow: More Data Science, Less Engineering
 Author: Metaflow Developers
 Author-email: help@metaflow.org
@@ -26,7 +26,7 @@ License-File: LICENSE
 Requires-Dist: requests
 Requires-Dist: boto3
 Provides-Extra: stubs
-Requires-Dist: metaflow-stubs==2.12.36; extra == "stubs"
+Requires-Dist: metaflow-stubs==2.12.38; extra == "stubs"
 
 ![Metaflow_Logo_Horizontal_FullColor_Ribbon_Dark_RGB](https://user-images.githubusercontent.com/763451/89453116-96a57e00-d713-11ea-9fa6-82b29d4d6eff.png)
 
@@ -97,3 +97,4 @@ There are several ways to get in touch with us:
 
 ## Contributing
 We welcome contributions to Metaflow. Please see our [contribution guide](https://docs.metaflow.org/introduction/contributing-to-metaflow) for more details.
+

{metaflow-2.12.36 → metaflow-2.12.38}/README.md

@@ -67,3 +67,4 @@ There are several ways to get in touch with us:
 
 ## Contributing
 We welcome contributions to Metaflow. Please see our [contribution guide](https://docs.metaflow.org/introduction/contributing-to-metaflow) for more details.
+

{metaflow-2.12.36 → metaflow-2.12.38}/metaflow/__init__.py

@@ -103,6 +103,9 @@ from .flowspec import FlowSpec
 
 from .parameters import Parameter, JSONTypeClass, JSONType
 
+from .user_configs.config_parameters import Config, config_expr
+from .user_configs.config_decorators import CustomFlowDecorator, CustomStepDecorator
+
 # data layer
 # For historical reasons, we make metaflow.plugins.datatools accessible as
 # metaflow.datatools. S3 is also a tool that has historically been available at the

metaflow-2.12.38/metaflow/cli.py

@@ -0,0 +1,576 @@
+import functools
+import inspect
+import sys
+import traceback
+from datetime import datetime
+
+import metaflow.tracing as tracing
+from metaflow._vendor import click
+
+from . import decorators, lint, metaflow_version, parameters, plugins
+from .cli_args import cli_args
+from .cli_components.utils import LazyGroup, LazyPluginCommandCollection
+from .datastore import FlowDataStore
+from .exception import CommandException, MetaflowException
+from .flowspec import _FlowState
+from .graph import FlowGraph
+from .metaflow_config import (
+    DECOSPECS,
+    DEFAULT_DATASTORE,
+    DEFAULT_ENVIRONMENT,
+    DEFAULT_EVENT_LOGGER,
+    DEFAULT_METADATA,
+    DEFAULT_MONITOR,
+    DEFAULT_PACKAGE_SUFFIXES,
+)
+from .metaflow_current import current
+from metaflow.system import _system_monitor, _system_logger
+from .metaflow_environment import MetaflowEnvironment
+from .plugins import (
+    DATASTORES,
+    ENVIRONMENTS,
+    LOGGING_SIDECARS,
+    METADATA_PROVIDERS,
+    MONITOR_SIDECARS,
+)
+from .pylint_wrapper import PyLint
+from .R import metaflow_r_version, use_r
+from .util import resolve_identity
+from .user_configs.config_options import LocalFileInput, config_options
+from .user_configs.config_parameters import ConfigValue
+
+ERASE_TO_EOL = "\033[K"
+HIGHLIGHT = "red"
+INDENT = " " * 4
+
+LOGGER_TIMESTAMP = "magenta"
+LOGGER_COLOR = "green"
+LOGGER_BAD_COLOR = "red"
+
+
+def echo_dev_null(*args, **kwargs):
+    pass
+
+
+def echo_always(line, **kwargs):
+    kwargs["err"] = kwargs.get("err", True)
+    if kwargs.pop("indent", None):
+        line = "\n".join(INDENT + x for x in line.splitlines())
+    if "nl" not in kwargs or kwargs["nl"]:
+        line += ERASE_TO_EOL
+    top = kwargs.pop("padding_top", None)
+    bottom = kwargs.pop("padding_bottom", None)
+    highlight = kwargs.pop("highlight", HIGHLIGHT)
+    if top:
+        click.secho(ERASE_TO_EOL, **kwargs)
+
+    hl_bold = kwargs.pop("highlight_bold", True)
+    nl = kwargs.pop("nl", True)
+    fg = kwargs.pop("fg", None)
+    bold = kwargs.pop("bold", False)
+    kwargs["nl"] = False
+    hl = True
+    nobold = kwargs.pop("no_bold", False)
+    if nobold:
+        click.secho(line, **kwargs)
+    else:
+        for span in line.split("*"):
+            if hl:
+                hl = False
+                kwargs["fg"] = fg
+                kwargs["bold"] = bold
+                click.secho(span, **kwargs)
+            else:
+                hl = True
+                kwargs["fg"] = highlight
+                kwargs["bold"] = hl_bold
+                click.secho(span, **kwargs)
+    if nl:
+        kwargs["nl"] = True
+        click.secho("", **kwargs)
+    if bottom:
+        click.secho(ERASE_TO_EOL, **kwargs)
+
+
+def logger(body="", system_msg=False, head="", bad=False, timestamp=True, nl=True):
+    if timestamp:
+        if timestamp is True:
+            dt = datetime.now()
+        else:
+            dt = timestamp
+        tstamp = dt.strftime("%Y-%m-%d %H:%M:%S.%f")[:-3]
+        click.secho(tstamp + " ", fg=LOGGER_TIMESTAMP, nl=False)
+    if head:
+        click.secho(head, fg=LOGGER_COLOR, nl=False)
+    click.secho(body, bold=system_msg, fg=LOGGER_BAD_COLOR if bad else None, nl=nl)
+
+
+def config_merge_cb(ctx, param, value):
+    # Callback to:
+    #  - read  the Click auto_envvar variable from both the
+    #    environment AND the configuration
+    #  - merge that value with the value passed in the command line (value)
+    #  - return the value as a tuple
+    # Note that this function gets called even if there is no option passed on the
+    # command line.
+    # NOTE: Assumes that ctx.auto_envvar_prefix is set to METAFLOW (same as in
+    # from_conf)
+
+    # Special case where DECOSPECS and value are the same. This happens
+    # when there is no --with option at the TL and DECOSPECS is read from
+    # the env var. In this case, click also passes it as value
+    splits = DECOSPECS.split()
+    if len(splits) == len(value) and all([a == b for (a, b) in zip(splits, value)]):
+        return value
+    return tuple(list(value) + DECOSPECS.split())
+
+
+@click.group(
+    cls=LazyGroup,
+    lazy_subcommands={
+        "init": "metaflow.cli_components.init_cmd.init",
+        "dump": "metaflow.cli_components.dump_cmd.dump",
+        "step": "metaflow.cli_components.step_cmd.step",
+        "run": "metaflow.cli_components.run_cmds.run",
+        "resume": "metaflow.cli_components.run_cmds.resume",
+    },
+)
+def cli(ctx):
+    pass
+
+
+@cli.command(help="Check that the flow is valid (default).")
+@click.option(
+    "--warnings/--no-warnings",
+    default=False,
+    show_default=True,
+    help="Show all Pylint warnings, not just errors.",
+)
+@click.pass_obj
+def check(obj, warnings=False):
+    if obj.is_quiet:
+        echo = echo_dev_null
+    else:
+        echo = echo_always
+    _check(
+        echo, obj.graph, obj.flow, obj.environment, pylint=obj.pylint, warnings=warnings
+    )
+    fname = inspect.getfile(obj.flow.__class__)
+    echo(
+        "\n*'{cmd} show'* shows a description of this flow.\n"
+        "*'{cmd} run'* runs the flow locally.\n"
+        "*'{cmd} help'* shows all available commands and options.\n".format(cmd=fname),
+        highlight="magenta",
+        highlight_bold=False,
+    )
+
+
+@cli.command(help="Show structure of the flow.")
+@click.pass_obj
+def show(obj):
+    echo_always("\n%s" % obj.graph.doc)
+    for _, node in sorted((n.func_lineno, n) for n in obj.graph):
+        echo_always("\nStep *%s*" % node.name, err=False)
+        echo_always(node.doc if node.doc else "?", indent=True, err=False)
+        if node.type != "end":
+            echo_always(
+                "*=>* %s" % ", ".join("*%s*" % n for n in node.out_funcs),
+                indent=True,
+                highlight="magenta",
+                highlight_bold=False,
+                err=False,
+            )
+    echo_always("")
+
+
+@cli.command(help="Show all available commands.")
+@click.pass_context
+def help(ctx):
+    print(ctx.parent.get_help())
+
+
+@cli.command(help="Output internal state of the flow graph.")
+@click.option("--json", is_flag=True, help="Output the flow graph in JSON format.")
+@click.pass_obj
+def output_raw(obj, json):
+    if json:
+        import json as _json
+
+        _msg = "Internal representation of the flow in JSON format:"
+        _graph_dict, _graph_struct = obj.graph.output_steps()
+        _graph = _json.dumps(
+            dict(graph=_graph_dict, graph_structure=_graph_struct), indent=4
+        )
+    else:
+        _graph = str(obj.graph)
+        _msg = "Internal representation of the flow:"
+    echo(_msg, fg="magenta", bold=False)
+    echo_always(_graph, err=False)
+
+
+@cli.command(help="Visualize the flow with Graphviz.")
+@click.pass_obj
+def output_dot(obj):
+    echo("Visualizing the flow as a GraphViz graph", fg="magenta", bold=False)
+    echo(
+        "Try piping the output to 'dot -Tpng -o graph.png' to produce "
+        "an actual image.",
+        indent=True,
+    )
+    echo_always(obj.graph.output_dot(), err=False)
+
+
+@cli.command(help="Print the Metaflow version")
+@click.pass_obj
+def version(obj):
+    echo_always(obj.version)
+
+
+# NOTE: add_decorator_options should be TL because it checks to make sure
+# that no option conflict with the ones below
+@decorators.add_decorator_options
+@config_options
+@click.command(
+    cls=LazyPluginCommandCollection,
+    sources=[cli],
+    lazy_sources=plugins.get_plugin_cli_path(),
+    invoke_without_command=True,
+)
+@tracing.cli_entrypoint("cli/start")
+# Quiet is eager to make sure it is available when processing --config options since
+# we need it to construct a context to pass to any DeployTimeField for the default
+# value.
+@click.option(
+    "--quiet/--not-quiet",
+    show_default=True,
+    default=False,
+    help="Suppress unnecessary messages",
+    is_eager=True,
+)
+@click.option(
+    "--metadata",
+    default=DEFAULT_METADATA,
+    show_default=True,
+    type=click.Choice([m.TYPE for m in METADATA_PROVIDERS]),
+    help="Metadata service type",
+)
+@click.option(
+    "--environment",
+    default=DEFAULT_ENVIRONMENT,
+    show_default=True,
+    type=click.Choice(["local"] + [m.TYPE for m in ENVIRONMENTS]),
+    help="Execution environment type",
+)
+# See comment for --quiet
+@click.option(
+    "--datastore",
+    default=DEFAULT_DATASTORE,
+    show_default=True,
+    type=click.Choice([d.TYPE for d in DATASTORES]),
+    help="Data backend type",
+    is_eager=True,
+)
+@click.option("--datastore-root", help="Root path for datastore")
+@click.option(
+    "--package-suffixes",
+    help="A comma-separated list of file suffixes to include in the code package.",
+    default=DEFAULT_PACKAGE_SUFFIXES,
+    show_default=True,
+)
+@click.option(
+    "--with",
+    "decospecs",
+    multiple=True,
+    help="Add a decorator to all steps. You can specify this option "
+    "multiple times to attach multiple decorators in steps.",
+    callback=config_merge_cb,
+)
+@click.option(
+    "--pylint/--no-pylint",
+    default=True,
+    show_default=True,
+    help="Run Pylint on the flow if pylint is installed.",
+)
+@click.option(
+    "--event-logger",
+    default=DEFAULT_EVENT_LOGGER,
+    show_default=True,
+    type=click.Choice(LOGGING_SIDECARS),
+    help="type of event logger used",
+)
+@click.option(
+    "--monitor",
+    default=DEFAULT_MONITOR,
+    show_default=True,
+    type=click.Choice(MONITOR_SIDECARS),
+    help="Monitoring backend type",
+)
+@click.option(
+    "--local-config-file",
+    type=LocalFileInput(exists=True, readable=True, dir_okay=False, resolve_path=True),
+    required=False,
+    default=None,
+    help="A filename containing the dumped configuration values. Internal use only.",
+    hidden=True,
+    is_eager=True,
+)
+@click.pass_context
+def start(
+    ctx,
+    quiet=False,
+    metadata=None,
+    environment=None,
+    datastore=None,
+    datastore_root=None,
+    decospecs=None,
+    package_suffixes=None,
+    pylint=None,
+    event_logger=None,
+    monitor=None,
+    local_config_file=None,
+    config_file_options=None,
+    config_value_options=None,
+    **deco_options
+):
+    if quiet:
+        echo = echo_dev_null
+    else:
+        echo = echo_always
+
+    ctx.obj.version = metaflow_version.get_version()
+    version = ctx.obj.version
+    if use_r():
+        version = metaflow_r_version()
+
+    echo("Metaflow %s" % version, fg="magenta", bold=True, nl=False)
+    echo(" executing *%s*" % ctx.obj.flow.name, fg="magenta", nl=False)
+    echo(" for *%s*" % resolve_identity(), fg="magenta")
+
+    # At this point, we are able to resolve the user-configuration options so we can
+    # process all those decorators that the user added that will modify the flow based
+    # on those configurations. It is important to do this as early as possible since it
+    # actually modifies the flow itself
+
+    # When we process the options, the first one processed will return None and the
+    # second one processed will return the actual options. The order of processing
+    # depends on what (and in what order) the user specifies on the command line.
+    config_options = config_file_options or config_value_options
+    ctx.obj.flow = ctx.obj.flow._process_config_decorators(config_options)
+
+    cli_args._set_top_kwargs(ctx.params)
+    ctx.obj.echo = echo
+    ctx.obj.echo_always = echo_always
+    ctx.obj.is_quiet = quiet
+    ctx.obj.graph = ctx.obj.flow._graph
+    ctx.obj.logger = logger
+    ctx.obj.pylint = pylint
+    ctx.obj.check = functools.partial(_check, echo)
+    ctx.obj.top_cli = cli
+    ctx.obj.package_suffixes = package_suffixes.split(",")
+
+    ctx.obj.environment = [
+        e for e in ENVIRONMENTS + [MetaflowEnvironment] if e.TYPE == environment
+    ][0](ctx.obj.flow)
+    ctx.obj.environment.validate_environment(ctx.obj.logger, datastore)
+
+    ctx.obj.event_logger = LOGGING_SIDECARS[event_logger](
+        flow=ctx.obj.flow, env=ctx.obj.environment
+    )
+    ctx.obj.event_logger.start()
+    _system_logger.init_system_logger(ctx.obj.flow.name, ctx.obj.event_logger)
+
+    ctx.obj.monitor = MONITOR_SIDECARS[monitor](
+        flow=ctx.obj.flow, env=ctx.obj.environment
+    )
+    ctx.obj.monitor.start()
+    _system_monitor.init_system_monitor(ctx.obj.flow.name, ctx.obj.monitor)
+
+    ctx.obj.metadata = [m for m in METADATA_PROVIDERS if m.TYPE == metadata][0](
+        ctx.obj.environment, ctx.obj.flow, ctx.obj.event_logger, ctx.obj.monitor
+    )
+
+    ctx.obj.datastore_impl = [d for d in DATASTORES if d.TYPE == datastore][0]
+
+    if datastore_root is None:
+        datastore_root = ctx.obj.datastore_impl.get_datastore_root_from_config(
+            ctx.obj.echo
+        )
+    if datastore_root is None:
+        raise CommandException(
+            "Could not find the location of the datastore -- did you correctly set the "
+            "METAFLOW_DATASTORE_SYSROOT_%s environment variable?" % datastore.upper()
+        )
+
+    ctx.obj.datastore_impl.datastore_root = datastore_root
+
+    FlowDataStore.default_storage_impl = ctx.obj.datastore_impl
+    ctx.obj.flow_datastore = FlowDataStore(
+        ctx.obj.flow.name,
+        ctx.obj.environment,
+        ctx.obj.metadata,
+        ctx.obj.event_logger,
+        ctx.obj.monitor,
+    )
+
+    ctx.obj.config_options = config_options
+
+    decorators._init(ctx.obj.flow)
+
+    # It is important to initialize flow decorators early as some of the
+    # things they provide may be used by some of the objects initialized after.
+    decorators._init_flow_decorators(
+        ctx.obj.flow,
+        ctx.obj.graph,
+        ctx.obj.environment,
+        ctx.obj.flow_datastore,
+        ctx.obj.metadata,
+        ctx.obj.logger,
+        echo,
+        deco_options,
+    )
+
+    # In the case of run/resume, we will want to apply the TL decospecs
+    # *after* the run decospecs so that they don't take precedence. In other
+    # words, for the same decorator, we want `myflow.py run --with foo` to
+    # take precedence over any other `foo` decospec
+    ctx.obj.tl_decospecs = list(decospecs or [])
+
+    # initialize current and parameter context for deploy-time parameters
+    current._set_env(flow=ctx.obj.flow, is_running=False)
+    parameters.set_parameter_context(
+        ctx.obj.flow.name,
+        ctx.obj.echo,
+        ctx.obj.flow_datastore,
+        {
+            k: ConfigValue(v)
+            for k, v in ctx.obj.flow.__class__._flow_state.get(
+                _FlowState.CONFIGS, {}
+            ).items()
+        },
+    )
+
+    if (
+        hasattr(ctx, "saved_args")
+        and ctx.saved_args
+        and ctx.saved_args[0] not in ("run", "resume")
+    ):
+        # run/resume are special cases because they can add more decorators with --with,
+        # so they have to take care of themselves.
+        all_decospecs = ctx.obj.tl_decospecs + list(
+            ctx.obj.environment.decospecs() or []
+        )
+        if all_decospecs:
+            decorators._attach_decorators(ctx.obj.flow, all_decospecs)
+            decorators._init(ctx.obj.flow)
+            # Regenerate graph if we attached more decorators
+            ctx.obj.graph = FlowGraph(ctx.obj.flow.__class__)
+
+        decorators._init_step_decorators(
+            ctx.obj.flow,
+            ctx.obj.graph,
+            ctx.obj.environment,
+            ctx.obj.flow_datastore,
+            ctx.obj.logger,
+        )
+
+        # TODO (savin): Enable lazy instantiation of package
+        ctx.obj.package = None
+
+    if ctx.invoked_subcommand is None:
+        ctx.invoke(check)
+
+
+def _check(echo, graph, flow, environment, pylint=True, warnings=False, **kwargs):
+    echo("Validating your flow...", fg="magenta", bold=False)
+    linter = lint.linter
+    # TODO set linter settings
+    linter.run_checks(graph, **kwargs)
+    echo("The graph looks good!", fg="green", bold=True, indent=True)
+    if pylint:
+        echo("Running pylint...", fg="magenta", bold=False)
+        fname = inspect.getfile(flow.__class__)
+        pylint = PyLint(fname)
+        if pylint.has_pylint():
+            pylint_is_happy, pylint_exception_msg = pylint.run(
+                warnings=warnings,
+                pylint_config=environment.pylint_config(),
+                logger=echo_always,
+            )
+
+            if pylint_is_happy:
+                echo("Pylint is happy!", fg="green", bold=True, indent=True)
+            else:
+                echo(
+                    "Pylint couldn't analyze your code.\n\tPylint exception: %s"
+                    % pylint_exception_msg,
+                    fg="red",
+                    bold=True,
+                    indent=True,
+                )
+                echo("Skipping Pylint checks.", fg="red", bold=True, indent=True)
+        else:
+            echo(
+                "Pylint not found, so extra checks are disabled.",
+                fg="green",
+                indent=True,
+                bold=False,
+            )
+
+
+def print_metaflow_exception(ex):
+    echo_always(ex.headline, indent=True, nl=False, bold=True)
+    if ex.line_no is None:
+        echo_always(":")
+    else:
+        echo_always(" on line %d:" % ex.line_no, bold=True)
+    echo_always(ex.message, indent=True, bold=False, padding_bottom=True)
+
+
+def print_unknown_exception(ex):
+    echo_always("Internal error", indent=True, bold=True)
+    echo_always(traceback.format_exc(), highlight=None, highlight_bold=False)
+
+
+class CliState(object):
+    def __init__(self, flow):
+        self.flow = flow
+
+
+def main(flow, args=None, handle_exceptions=True, entrypoint=None):
+    # Ignore warning(s) and prevent spamming the end-user.
+    # TODO: This serves as a short term workaround for RuntimeWarning(s) thrown
+    # in py3.8 related to log buffering (bufsize=1).
+    import warnings
+
+    warnings.filterwarnings("ignore")
+    if entrypoint is None:
+        entrypoint = [sys.executable, sys.argv[0]]
+
+    state = CliState(flow)
+    state.entrypoint = entrypoint
+
+    try:
+        if args is None:
+            start(auto_envvar_prefix="METAFLOW", obj=state)
+        else:
+            try:
+                start(args=args, obj=state, auto_envvar_prefix="METAFLOW")
+            except SystemExit as e:
+                return e.code
+    except MetaflowException as x:
+        if handle_exceptions:
+            print_metaflow_exception(x)
+            sys.exit(1)
+        else:
+            raise
+    except Exception as x:
+        if handle_exceptions:
+            print_unknown_exception(x)
+            sys.exit(1)
+        else:
+            raise
+    finally:
+        if hasattr(state, "monitor") and state.monitor is not None:
+            state.monitor.terminate()
+        if hasattr(state, "event_logger") and state.event_logger is not None:
+            state.event_logger.terminate()

{metaflow-2.12.36 → metaflow-2.12.38}/metaflow/cli_args.py

@@ -12,7 +12,14 @@
 # well as the converting of options in runtime.py. We should make it so that we
 # can properly shlex things and un-shlex when using. Ideally this should all be
 # done in one place.
+#
+# NOTE: There is an important between these two as well:
+#  - this one will include local_config_file whereas the other one WILL NOT.
+#    This is because this is used when constructing the parallel UBF command which
+#    executes locally and therefore needs the local_config_file but the other (remote)
+#    commands do not.
 
+from .user_configs.config_options import ConfigInput
 from .util import to_unicode
 
 
@@ -65,6 +72,16 @@ class CLIArgs(object):
             # keyword in Python, so we call it 'decospecs' in click args
             if k == "decospecs":
                 k = "with"
+            if k in ("config_file_options", "config_value_options"):
+                # Special handling here since we gather them all in one option but actually
+                # need to send them one at a time using --config-value <name> kv.<name>.
+                # Note it can be either config_file_options or config_value_options depending
+                # on click processing order.
+                for config_name in v.keys():
+                    yield "--config-value"
+                    yield to_unicode(config_name)
+                    yield to_unicode(ConfigInput.make_key_name(config_name))
+                continue
             k = k.replace("_", "-")
             v = v if isinstance(v, (list, tuple, set)) else [v]
             for value in v: