merge-cli 3.2.0__tar.gz → 3.2.1__tar.gz

{merge_cli-3.2.0 → merge_cli-3.2.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: merge-cli
-Version: 3.2.0
+Version: 3.2.1
 Summary: MERGE 变异致病性预测 CLI（服务器固定，集成模型内嵌，无需手动配置）
 Project-URL: Homepage, https://merge.fanglab.cn
 Requires-Python: >=3.11

{merge_cli-3.2.0 → merge_cli-3.2.1}/merge_cli/api.py

@@ -62,8 +62,14 @@ def predict_single(
 # ─────────────────────────────────────────────────────────────
 # 2. 集成模型评分  POST /ensemble/
 # ─────────────────────────────────────────────────────────────
-def predict_ensemble(prediction: dict, all_transcripts: list) -> dict:
+def predict_ensemble(
+    prediction: dict,
+    all_transcripts: list,
+    ensemble_type: Optional[str] = None,
+) -> dict:
     payload = {"prediction": prediction, "all_transcripts": all_transcripts}
+    if ensemble_type:
+        payload["ensemble_type"] = ensemble_type
     resp = requests.post(
         f"{_BASE}/ensemble/",
         json=payload,

{merge_cli-3.2.0 → merge_cli-3.2.1}/merge_cli/cli.py

@@ -206,7 +206,7 @@ def config_show():
               help="手动指定变异类型（跳过 ANNOVAR）")
 @_add_model_options
 def predict(chrom, pos, ref, alt, genome, fmt, no_ensemble,
-            use_local, ensemble_type, local_genome_path, **kwargs):
+            use_local, ensemble_type, **kwargs):
     """单变异致病性预测（远程 / 本地模式）。
 
     \b
@@ -256,10 +256,6 @@ def predict(chrom, pos, ref, alt, genome, fmt, no_ensemble,
                     dbnsfp      = prediction.get("dbnsfp") or {}
                     transcripts = [dbnsfp] if dbnsfp else []
                     # FIX #7: 自动通过远程 ANNOVAR 判断变异类型
-                    if not ensemble_type:
-                        from . import local_engine as _le
-                        ensemble_type = _le.get_variant_type(
-                            chrom, pos, ref, alt, genome)
                     ens_resp = api.predict_ensemble(prediction, transcripts,
                                                     ensemble_type=ensemble_type)
                     if ens_resp.get("success"):
@@ -604,7 +600,7 @@ def local_download(file_type):
               help="手动指定变异类型（跳过 ANNOVAR）：coding / noncoding / splice")
 @_add_model_options
 def local_predict(chrom, pos, ref, alt, genome, fmt,
-                  no_ensemble, ensemble_type, local_genome_path=None, **kwargs):
+                  no_ensemble, ensemble_type, **kwargs):
     """完全在本地运行单变异预测，无速率限制。
 
     \b

{merge_cli-3.2.0 → merge_cli-3.2.1}/merge_cli.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: merge-cli
-Version: 3.2.0
+Version: 3.2.1
 Summary: MERGE 变异致病性预测 CLI（服务器固定，集成模型内嵌，无需手动配置）
 Project-URL: Homepage, https://merge.fanglab.cn
 Requires-Python: >=3.11

{merge_cli-3.2.0 → merge_cli-3.2.1}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "merge-cli"
-version = "3.2.0"
+version = "3.2.1"
 description = "MERGE 变异致病性预测 CLI（服务器固定，集成模型内嵌，无需手动配置）"
 requires-python = ">=3.11"
 dependencies = [