memory-graph 0.3.12__tar.gz → 0.3.14__tar.gz

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Files changed (159) hide show
  1. memory_graph-0.3.14/MANIFEST.in +1 -0
  2. {memory_graph-0.3.12 → memory_graph-0.3.14}/PKG-INFO +61 -39
  3. memory_graph-0.3.12/memory_graph.egg-info/PKG-INFO → memory_graph-0.3.14/README.md +59 -56
  4. memory_graph-0.3.14/images/add_one.png +0 -0
  5. memory_graph-0.3.14/images/avltree.py~ +41 -0
  6. memory_graph-0.3.14/images/avltree_base.png +0 -0
  7. memory_graph-0.3.14/images/avltree_dir.png +0 -0
  8. memory_graph-0.3.14/images/avltree_fail.gv +26 -0
  9. memory_graph-0.3.14/images/avltree_key_value.png +0 -0
  10. memory_graph-0.3.14/images/avltree_linear.png +0 -0
  11. memory_graph-0.3.14/images/avltree_table.png +0 -0
  12. memory_graph-0.3.14/images/bin_tree.png +0 -0
  13. memory_graph-0.3.14/images/copies.png +0 -0
  14. memory_graph-0.3.14/images/copy_method.png +0 -0
  15. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/create_gif.sh +1 -1
  16. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/create_images.sh +1 -0
  17. memory_graph-0.3.14/images/debugging.gif +0 -0
  18. memory_graph-0.3.14/images/debugging01.png +0 -0
  19. memory_graph-0.3.14/images/debugging02.png +0 -0
  20. memory_graph-0.3.14/images/debugging03.png +0 -0
  21. memory_graph-0.3.14/images/debugging04.png +0 -0
  22. memory_graph-0.3.14/images/debugging05.png +0 -0
  23. memory_graph-0.3.14/images/debugging06.png +0 -0
  24. memory_graph-0.3.14/images/extension_numpy.png +0 -0
  25. memory_graph-0.3.14/images/extension_pandas.png +0 -0
  26. memory_graph-0.3.14/images/factorial.gif +0 -0
  27. memory_graph-0.3.14/images/factorial01.png +0 -0
  28. memory_graph-0.3.14/images/factorial02.png +0 -0
  29. memory_graph-0.3.14/images/factorial03.png +0 -0
  30. memory_graph-0.3.14/images/factorial04.png +0 -0
  31. memory_graph-0.3.14/images/factorial05.png +0 -0
  32. memory_graph-0.3.14/images/factorial06.png +0 -0
  33. memory_graph-0.3.14/images/factorial07.png +0 -0
  34. memory_graph-0.3.14/images/hash_set.png +0 -0
  35. memory_graph-0.3.14/images/highlight.png +0 -0
  36. memory_graph-0.3.14/images/immutable1.png +0 -0
  37. memory_graph-0.3.14/images/immutable2.png +0 -0
  38. memory_graph-0.3.14/images/linked_list.png +0 -0
  39. memory_graph-0.3.14/images/many_types.png +0 -0
  40. memory_graph-0.3.14/images/memory_graph.gv +20 -0
  41. memory_graph-0.3.14/images/memory_graph.gv.pdf +0 -0
  42. memory_graph-0.3.14/images/mutable1.png +0 -0
  43. memory_graph-0.3.14/images/mutable2.png +0 -0
  44. memory_graph-0.3.14/images/my_graph.gv +35 -0
  45. memory_graph-0.3.14/images/my_graph.pdf +0 -0
  46. memory_graph-0.3.14/images/not_node_types.py +9 -0
  47. memory_graph-0.3.14/images/not_node_types.py~ +9 -0
  48. memory_graph-0.3.14/images/not_node_types1.png +0 -0
  49. memory_graph-0.3.14/images/not_node_types2.png +0 -0
  50. memory_graph-0.3.14/images/power_set.gif +0 -0
  51. memory_graph-0.3.14/images/power_set1.png +0 -0
  52. memory_graph-0.3.14/images/power_set10.png +0 -0
  53. memory_graph-0.3.14/images/power_set11.png +0 -0
  54. memory_graph-0.3.14/images/power_set12.png +0 -0
  55. memory_graph-0.3.14/images/power_set13.png +0 -0
  56. memory_graph-0.3.14/images/power_set14.png +0 -0
  57. memory_graph-0.3.14/images/power_set15.png +0 -0
  58. memory_graph-0.3.14/images/power_set16.png +0 -0
  59. memory_graph-0.3.14/images/power_set17.png +0 -0
  60. memory_graph-0.3.14/images/power_set18.png +0 -0
  61. memory_graph-0.3.14/images/power_set19.png +0 -0
  62. memory_graph-0.3.14/images/power_set2.png +0 -0
  63. memory_graph-0.3.14/images/power_set20.png +0 -0
  64. memory_graph-0.3.14/images/power_set21.png +0 -0
  65. memory_graph-0.3.14/images/power_set22.png +0 -0
  66. memory_graph-0.3.14/images/power_set3.png +0 -0
  67. memory_graph-0.3.14/images/power_set4.png +0 -0
  68. memory_graph-0.3.14/images/power_set5.png +0 -0
  69. memory_graph-0.3.14/images/power_set6.png +0 -0
  70. memory_graph-0.3.14/images/power_set7.png +0 -0
  71. memory_graph-0.3.14/images/power_set8.png +0 -0
  72. memory_graph-0.3.14/images/power_set9.png +0 -0
  73. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/__init__.py +20 -10
  74. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/html_table.py +26 -31
  75. memory_graph-0.3.12/README.md → memory_graph-0.3.14/memory_graph.egg-info/PKG-INFO +78 -37
  76. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph.egg-info/SOURCES.txt +47 -1
  77. {memory_graph-0.3.12 → memory_graph-0.3.14}/setup.py +3 -3
  78. memory_graph-0.3.14/src/jupyter_example.ipynb +85 -0
  79. memory_graph-0.3.12/MANIFEST.in +0 -1
  80. memory_graph-0.3.12/images/add_one.png +0 -0
  81. memory_graph-0.3.12/images/avltree_base.png +0 -0
  82. memory_graph-0.3.12/images/avltree_dir.png +0 -0
  83. memory_graph-0.3.12/images/avltree_key_value.png +0 -0
  84. memory_graph-0.3.12/images/avltree_linear.png +0 -0
  85. memory_graph-0.3.12/images/avltree_table.png +0 -0
  86. memory_graph-0.3.12/images/bin_tree.png +0 -0
  87. memory_graph-0.3.12/images/copies.png +0 -0
  88. memory_graph-0.3.12/images/copy_method.png +0 -0
  89. memory_graph-0.3.12/images/debugging.gif +0 -0
  90. memory_graph-0.3.12/images/extension_numpy.png +0 -0
  91. memory_graph-0.3.12/images/extension_pandas.png +0 -0
  92. memory_graph-0.3.12/images/factorial.gif +0 -0
  93. memory_graph-0.3.12/images/hash_set.png +0 -0
  94. memory_graph-0.3.12/images/highlight.png +0 -0
  95. memory_graph-0.3.12/images/immutable1.png +0 -0
  96. memory_graph-0.3.12/images/immutable2.png +0 -0
  97. memory_graph-0.3.12/images/linked_list.png +0 -0
  98. memory_graph-0.3.12/images/many_types.png +0 -0
  99. memory_graph-0.3.12/images/mutable1.png +0 -0
  100. memory_graph-0.3.12/images/mutable2.png +0 -0
  101. memory_graph-0.3.12/images/power_set.gif +0 -0
  102. {memory_graph-0.3.12 → memory_graph-0.3.14}/LICENSE.txt +0 -0
  103. {memory_graph-0.3.12 → memory_graph-0.3.14}/TODO.txt +0 -0
  104. /memory_graph-0.3.12/images/jupyter_example.ipynb → /memory_graph-0.3.14/images/.ipynb_checkpoints/jupyter_example-checkpoint.ipynb +0 -0
  105. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/add_one.py +0 -0
  106. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/avltree.py +0 -0
  107. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/avltree_fail.png +0 -0
  108. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/bin_tree.py +0 -0
  109. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/copies.py +0 -0
  110. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/copy_method.py +0 -0
  111. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/debug_vscode.png +0 -0
  112. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/debugging.py +0 -0
  113. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/extension_numpy.py +0 -0
  114. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/extension_pandas.py +0 -0
  115. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/factorial.py +0 -0
  116. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/hash_set.py +0 -0
  117. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/highlight.py +0 -0
  118. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/immutable.py +0 -0
  119. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/ipython.png +0 -0
  120. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/jupyter_example.png +0 -0
  121. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/linked_list.py +0 -0
  122. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/many_types.py +0 -0
  123. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/mutable.py +0 -0
  124. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/power_set.py +0 -0
  125. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/pyodide.png +0 -0
  126. {memory_graph-0.3.12 → memory_graph-0.3.14}/images/uva.png +0 -0
  127. {memory_graph-0.3.12 → memory_graph-0.3.14}/install.txt +0 -0
  128. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/config.py +0 -0
  129. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/config_default.py +0 -0
  130. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/config_helpers.py +0 -0
  131. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/extension_numpy.py +0 -0
  132. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/extension_pandas.py +0 -0
  133. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/list_view.py +0 -0
  134. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/memory_to_nodes.py +0 -0
  135. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/node_base.py +0 -0
  136. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/node_key_value.py +0 -0
  137. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/node_linear.py +0 -0
  138. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/node_table.py +0 -0
  139. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/sequence.py +0 -0
  140. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/slicer.py +0 -0
  141. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/slices.py +0 -0
  142. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/slices_iterator.py +0 -0
  143. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/slices_table_iterator.py +0 -0
  144. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test.py +0 -0
  145. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_max_graph_depth.py +0 -0
  146. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_memory_graph.py +0 -0
  147. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_memory_to_nodes.py +0 -0
  148. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_sequence.py +0 -0
  149. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_slicer.py +0 -0
  150. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_slices.py +0 -0
  151. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/test_slices_iterator.py +0 -0
  152. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph/utils.py +0 -0
  153. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph.egg-info/dependency_links.txt +0 -0
  154. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph.egg-info/requires.txt +0 -0
  155. {memory_graph-0.3.12 → memory_graph-0.3.14}/memory_graph.egg-info/top_level.txt +0 -0
  156. {memory_graph-0.3.12 → memory_graph-0.3.14}/setup.cfg +0 -0
  157. {memory_graph-0.3.12 → memory_graph-0.3.14}/src/auto_memory_graph.py +0 -0
  158. {memory_graph-0.3.12 → memory_graph-0.3.14}/src/pyodide.html +0 -0
  159. {memory_graph-0.3.12 → memory_graph-0.3.14}/uml/memory_graph.uxf +0 -0
@@ -0,0 +1 @@
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+ recursive-include images/ *
@@ -1,7 +1,7 @@
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  Metadata-Version: 2.1
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  Name: memory_graph
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- Version: 0.3.12
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- Summary: Draws a graph of your data to analyze its structure.
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+ Version: 0.3.14
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+ Summary: Generate intuitive graphs of your Python data, perfect for debugging and understanding complex relationships.
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  Home-page: https://github.com/bterwijn/memory_graph
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  Author: Bas Terwijn
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  Author-email: bterwijn@gmail.com
@@ -24,9 +24,35 @@ pip install --upgrade memory_graph
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  ```
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  Additionally [Graphviz](https://graphviz.org/download/) needs to be installed.
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- # Sharing Data #
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+ # Memory Graph #
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+ For program understanding and debugging, the [memory_graph](https://pypi.org/project/memory-graph/) package can visualize your data, supporting many different data types, including but not limited to:
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+
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+ ```python
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+ import memory_graph as mg
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+
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+ class MyClass:
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+
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+ def __init__(self, x, y):
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+ self.x = x
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+ self.y = y
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+
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+ data = [ range(1, 2), (3, 4), {5, 6}, {7:'seven', 8:'eight'}, MyClass(9, 10) ]
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+ mg.show(data)
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+ ```
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+ ![many_types.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/many_types.png)
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+
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+ Instead of showing the graph on screen you can also render it to an output file of your choosing (see [Graphviz Output Formats](https://graphviz.org/docs/outputs/)) using for example:
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- In Python, assigning the list from variable `a` to variable `b` causes both variables to reference the same list object and therefore share the data. Consequently, any change applied through one variable will impact the other. This behavior can lead to elusive bugs if a programmer incorrectly assumes that list `a` and `b` are independent.
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+ ```python
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+ mg.render(data, "my_graph.pdf")
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+ mg.render(data, "my_graph.svg")
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+ mg.render(data, "my_graph.png")
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+ mg.render(data, "my_graph.gv") # Graphviz DOT file
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+ mg.render(data) # renders to 'mg.render_filename' with default value: 'memory_graph.pdf'
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+ ```
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+
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+ # Sharing Values #
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+ In Python, assigning the list from variable `a` to variable `b` causes both variables to reference the same list value and thus share it. Consequently, any change applied through one variable will impact the other. This behavior can lead to elusive bugs if a programmer incorrectly assumes that list `a` and `b` are independent.
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  <table><tr><td>
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@@ -67,33 +93,6 @@ identical?: True
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  ```
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  A better way to understand what data is shared is to draw a graph of the data using the [memory_graph](https://pypi.org/project/memory-graph/) package.
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- # Memory Graph #
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- The [memory_graph](https://pypi.org/project/memory-graph/) package can graph many different data types, not limited to:
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-
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- ```python
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- import memory_graph as mg
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-
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- class MyClass:
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-
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- def __init__(self, x, y):
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- self.x = x
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- self.y = y
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-
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- data = [ range(1, 2), (3, 4), {5, 6}, {7:'seven', 8:'eight'}, MyClass(9, 10) ]
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- mg.show(data)
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- ```
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- ![many_types.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/many_types.png)
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-
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- Instead of showing the graph you can also render it to an output file of your choosing (see [Graphviz Output Formats](https://graphviz.org/docs/outputs/)) using for example:
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-
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- ```python
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- mg.render(data, "my_graph.pdf")
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- mg.render(data, "my_graph.svg")
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- mg.render(data, "my_graph.png")
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- mg.render(data, "my_graph.gv") # Graphviz DOT file
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- mg.render(data) # renders to 'mg.render_filename' with default value: 'memory_graph.pdf'
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- ```
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-
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  # Chapters #
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  [Python Data Model](#python-data-model)
@@ -197,7 +196,7 @@ mg.show(locals())
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  ![copies.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/copies.png)
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- ### Custom Copy Method ###
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+ ### Custom Copy ###
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  We can write our own custom copy function or method in case the three "copy" options don't do what we want. For example, in the code below the copy() method of My_Class copies the `digits` but shares the `letters` between two objects.
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  ```python
@@ -224,7 +223,7 @@ mg.show(locals())
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  ## Call Stack ##
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- The `mg.get_call_stack()` function retrieves the entire call stack, including the local variables for each function on the stack. This enables us to visualize the local variables across all active functions simultaneously. Then by examining the graph, we can determine whether any local variables from different functions on the call stack share data. For instance, consider the function `add_one()` which adds the value `1` to each of its parameters `a`, `b`, and `c`.
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+ The `mg.get_call_stack()` function retrieves the entire call stack, including the local variables for each function on the stack. This enables us to visualize the local variables across all active functions simultaneously. By examining the graph, we can determine whether any local variables from different functions share data. For instance, consider the function `add_one()` which adds the value `1` to each of its parameters `a`, `b`, and `c`.
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  ```python
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  import memory_graph as mg
@@ -252,7 +251,7 @@ a:[4, 3, 2, 1] b:(4, 3, 2) c:[4, 3, 2]
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  This is because `b` is of immutable type 'tuple' so its value gets copied automatically when it is changed. And because the function is called with a copy of `c`, its original value is not changed by the function. The value of variable `a` is the only value of mutable type that is shared between the root stack frame **'0: \<module>'** and the **'1: add_one'** stack frame of the function so only that variable is affected as a result of the function call. The other changes remain confined to the local variables of the ```add_one()``` function.
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  ### Block ###
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- It is often helpful to temporarily block program execution to inspect the graph. For this, you can use the `mg.block()` function:
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+ It is often helpful to temporarily block program execution to inspect the graph. For this we can use the `mg.block()` function:
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  ```python
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  mg.block(fun, arg1, arg2, ...)
@@ -264,7 +263,7 @@ This function:
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  * then blocks execution until the &lt;Enter&gt; key is pressed
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  * finally returns the value of the `fun()` call
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- to change its behavior:
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+ To change its behavior:
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  * Set `mg.block_prints_location = False` to skip printing the source location.
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  * Set `mg.press_enter_message = None` to skip printing "Press &lt;Enter&gt; to continue...".
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@@ -319,7 +318,6 @@ print( power_set(['a', 'b', 'c']) )
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  [['a', 'b', 'c'], ['a', 'b'], ['a', 'c'], ['a'], ['b', 'c'], ['b'], ['c'], []]
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  ```
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-
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  ## Debugging ##
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  For the best debugging experience with memory_graph set for example expression:
@@ -463,7 +461,7 @@ class BinTree:
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  tree = BinTree()
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  n = 100
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  for i in range(n):
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- new_value = random.randrange(100)
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+ new_value = random.randrange(n)
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  tree.add(new_value)
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  ```
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  ![bin_tree.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/bin_tree.png)
@@ -534,6 +532,27 @@ Different aspects of memory_graph can be configured. The default configuration i
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  - ***mg.config.type_to_slicer*** : dict
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  - Maps each type to a Slicer. A slicer determines how many elements of a data type are shown in the graph to prevent the graph from getting too big. 'Slicer()' does no slicing, 'Slicer(1,2,3)' shows just 1 element at the beginning, 2 in the middle, and 3 at the end.
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+ ### Simplified Graph ###
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+ Memory_graph simplifies the visualization (and the viewer's mental model) by **not** showing separate nodes for immutable types like `bool`, `int`, `float`, `complex`, and `str` by default. This simplification can sometimes be slightly misleading. As in the example below, after a shallow copy, lists `a` and `b` technically share their `int` values, but the graph makes it appear as though `a` and `b` each have their own copies. However, since `int` is immutable, this simplification will never lead to unexpected changes—changing `a` won’t effect `b`.
537
+
538
+ The simplification strikes a balance: it is slightly misleading but keeps the graph clean and easy to understand and focuses on the mutable types where unexpected changes can occur. This is why it is the default behavior. If you do want to show separate nodes for `int` values, such as for educational purposes, you can simply remove `int` from the `mg.config.not_node_types` set:
539
+ ```python
540
+ import memory_graph as mg
541
+
542
+ a = [100, 200, 300]
543
+ b = a.copy()
544
+ mg.render(locals(), 'not_node_types1.png')
545
+
546
+ mg.config.not_node_types.remove(int) # now show separate nodes for int values
547
+
548
+ mg.render(locals(), 'not_node_types2.png')
549
+ ```
550
+ | ![not_node_types1](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/not_node_types1.png) | ![not_node_types2](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/not_node_types2.png) |
551
+ |:-----------------------------------------------------------:|:-------------------------------------------------------------:|
552
+ | not_node_types1.png — simplified | not_node_types2.png — technically correct |
553
+
554
+ Additionally, the simplification hides the [reuse of small int values](https://docs.python.org/3/c-api/long.html#c.PyLong_FromLong) in the current CPython implementation, an optimization that might otherwise confuse beginner Python programmers. For instance, after executing `a[1]+=1; b[1]+=1` the `201` value is, maybe surprisingly, still shared between `a` and `b`, whereas executing `a[2]+=1; b[2]+=1` does not result in sharing the `301` value.
555
+
537
556
  ### Temporary Configuration ###
538
557
  In addition to the global configuration, a temporary configuration can be set for a single `show()` or `render()` call to change the colors, orientation, and slicer. This example highlights a particular list element in red, gives it a horizontal orientation, and overwrites the default slicer for lists:
539
558
 
@@ -545,7 +564,7 @@ data = [ list(range(20)) for i in range(1,5)]
545
564
  highlight = data[2]
546
565
 
547
566
  mg.show( locals(),
548
- colors = {id(highlight): "red" }, # set color to "red"
567
+ colors = {id(highlight): "red" }, # set color to red
549
568
  vertical_orientations = {id(highlight): False }, # set horizontal orientation
550
569
  slicers = {id(highlight): Slicer()} # set no slicing
551
570
  )
@@ -736,7 +755,7 @@ display( mg.create_graph(mg.locals_jupyter()) ) # display the local variables in
736
755
  mg.block(display, mg.create_graph(mg.locals_jupyter()) ) # the same but blocked
737
756
  ```
738
757
 
739
- See for example [jupyter_example.ipynb](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/jupyter_example.ipynb).
758
+ See for example [jupyter_example.ipynb](https://raw.githubusercontent.com/bterwijn/memory_graph/main/src/jupyter_example.ipynb).
740
759
  ![jupyter_example.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/jupyter_example.png)
741
760
 
742
761
  ## ipython ##
@@ -758,3 +777,6 @@ We can also run memory_graph in the browser: <a href="https://bterwijn.github.io
758
777
  - Adobe Acrobat Reader [doesn't refresh a PDF file](https://superuser.com/questions/337011/windows-pdf-viewer-that-auto-refreshes-pdf-when-compiling-with-pdflatex) when it changes on disk and blocks updates which results in an `Could not open 'somefile.pdf' for writing : Permission denied` error. One solution is to install a PDF reader that does refresh ([Evince](https://www.fosshub.com/Evince.html), [Okular](https://okular.kde.org/), [SumatraPDF](https://www.sumatrapdfreader.org/), ...) and set it as the default PDF reader. Another solution is to `render()` the graph to a different output format and to open it manually.
759
778
 
760
779
  - When graph edges overlap it can be hard to distinguish them. Using an interactive graphviz viewer, such as [xdot](https://github.com/jrfonseca/xdot.py), on a '*.gv' DOT output file will help.
780
+
781
+ ### Invocation_Tree Package ###
782
+ The [memory_graph](https://pypi.org/project/memory-graph/) package visualizes your data. If instead you want to visualize function calls, check out the [invocation_tree](https://pypi.org/project/invocation-tree/) package.
@@ -1,22 +1,3 @@
1
- Metadata-Version: 2.1
2
- Name: memory_graph
3
- Version: 0.3.12
4
- Summary: Draws a graph of your data to analyze its structure.
5
- Home-page: https://github.com/bterwijn/memory_graph
6
- Author: Bas Terwijn
7
- Author-email: bterwijn@gmail.com
8
- License: BSD 2-clause
9
- Classifier: Development Status :: 4 - Beta
10
- Classifier: Intended Audience :: Education
11
- Classifier: Intended Audience :: Developers
12
- Classifier: License :: OSI Approved :: BSD License
13
- Classifier: Programming Language :: Python :: 3
14
- Classifier: Topic :: Education
15
- Classifier: Topic :: Software Development :: Debuggers
16
- Description-Content-Type: text/markdown
17
- License-File: LICENSE.txt
18
- Requires-Dist: graphviz
19
-
20
1
  # Installation #
21
2
  Install (or upgrade) `memory_graph` using pip:
22
3
  ```
@@ -24,9 +5,35 @@ pip install --upgrade memory_graph
24
5
  ```
25
6
  Additionally [Graphviz](https://graphviz.org/download/) needs to be installed.
26
7
 
27
- # Sharing Data #
8
+ # Memory Graph #
9
+ For program understanding and debugging, the [memory_graph](https://pypi.org/project/memory-graph/) package can visualize your data, supporting many different data types, including but not limited to:
10
+
11
+ ```python
12
+ import memory_graph as mg
13
+
14
+ class MyClass:
15
+
16
+ def __init__(self, x, y):
17
+ self.x = x
18
+ self.y = y
19
+
20
+ data = [ range(1, 2), (3, 4), {5, 6}, {7:'seven', 8:'eight'}, MyClass(9, 10) ]
21
+ mg.show(data)
22
+ ```
23
+ ![many_types.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/many_types.png)
24
+
25
+ Instead of showing the graph on screen you can also render it to an output file of your choosing (see [Graphviz Output Formats](https://graphviz.org/docs/outputs/)) using for example:
26
+
27
+ ```python
28
+ mg.render(data, "my_graph.pdf")
29
+ mg.render(data, "my_graph.svg")
30
+ mg.render(data, "my_graph.png")
31
+ mg.render(data, "my_graph.gv") # Graphviz DOT file
32
+ mg.render(data) # renders to 'mg.render_filename' with default value: 'memory_graph.pdf'
33
+ ```
28
34
 
29
- In Python, assigning the list from variable `a` to variable `b` causes both variables to reference the same list object and therefore share the data. Consequently, any change applied through one variable will impact the other. This behavior can lead to elusive bugs if a programmer incorrectly assumes that list `a` and `b` are independent.
35
+ # Sharing Values #
36
+ In Python, assigning the list from variable `a` to variable `b` causes both variables to reference the same list value and thus share it. Consequently, any change applied through one variable will impact the other. This behavior can lead to elusive bugs if a programmer incorrectly assumes that list `a` and `b` are independent.
30
37
 
31
38
  <table><tr><td>
32
39
 
@@ -67,33 +74,6 @@ identical?: True
67
74
  ```
68
75
  A better way to understand what data is shared is to draw a graph of the data using the [memory_graph](https://pypi.org/project/memory-graph/) package.
69
76
 
70
- # Memory Graph #
71
- The [memory_graph](https://pypi.org/project/memory-graph/) package can graph many different data types, not limited to:
72
-
73
- ```python
74
- import memory_graph as mg
75
-
76
- class MyClass:
77
-
78
- def __init__(self, x, y):
79
- self.x = x
80
- self.y = y
81
-
82
- data = [ range(1, 2), (3, 4), {5, 6}, {7:'seven', 8:'eight'}, MyClass(9, 10) ]
83
- mg.show(data)
84
- ```
85
- ![many_types.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/many_types.png)
86
-
87
- Instead of showing the graph you can also render it to an output file of your choosing (see [Graphviz Output Formats](https://graphviz.org/docs/outputs/)) using for example:
88
-
89
- ```python
90
- mg.render(data, "my_graph.pdf")
91
- mg.render(data, "my_graph.svg")
92
- mg.render(data, "my_graph.png")
93
- mg.render(data, "my_graph.gv") # Graphviz DOT file
94
- mg.render(data) # renders to 'mg.render_filename' with default value: 'memory_graph.pdf'
95
- ```
96
-
97
77
  # Chapters #
98
78
 
99
79
  [Python Data Model](#python-data-model)
@@ -197,7 +177,7 @@ mg.show(locals())
197
177
  ![copies.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/copies.png)
198
178
 
199
179
 
200
- ### Custom Copy Method ###
180
+ ### Custom Copy ###
201
181
  We can write our own custom copy function or method in case the three "copy" options don't do what we want. For example, in the code below the copy() method of My_Class copies the `digits` but shares the `letters` between two objects.
202
182
 
203
183
  ```python
@@ -224,7 +204,7 @@ mg.show(locals())
224
204
 
225
205
 
226
206
  ## Call Stack ##
227
- The `mg.get_call_stack()` function retrieves the entire call stack, including the local variables for each function on the stack. This enables us to visualize the local variables across all active functions simultaneously. Then by examining the graph, we can determine whether any local variables from different functions on the call stack share data. For instance, consider the function `add_one()` which adds the value `1` to each of its parameters `a`, `b`, and `c`.
207
+ The `mg.get_call_stack()` function retrieves the entire call stack, including the local variables for each function on the stack. This enables us to visualize the local variables across all active functions simultaneously. By examining the graph, we can determine whether any local variables from different functions share data. For instance, consider the function `add_one()` which adds the value `1` to each of its parameters `a`, `b`, and `c`.
228
208
 
229
209
  ```python
230
210
  import memory_graph as mg
@@ -252,7 +232,7 @@ a:[4, 3, 2, 1] b:(4, 3, 2) c:[4, 3, 2]
252
232
  This is because `b` is of immutable type 'tuple' so its value gets copied automatically when it is changed. And because the function is called with a copy of `c`, its original value is not changed by the function. The value of variable `a` is the only value of mutable type that is shared between the root stack frame **'0: \<module>'** and the **'1: add_one'** stack frame of the function so only that variable is affected as a result of the function call. The other changes remain confined to the local variables of the ```add_one()``` function.
253
233
 
254
234
  ### Block ###
255
- It is often helpful to temporarily block program execution to inspect the graph. For this, you can use the `mg.block()` function:
235
+ It is often helpful to temporarily block program execution to inspect the graph. For this we can use the `mg.block()` function:
256
236
 
257
237
  ```python
258
238
  mg.block(fun, arg1, arg2, ...)
@@ -264,7 +244,7 @@ This function:
264
244
  * then blocks execution until the &lt;Enter&gt; key is pressed
265
245
  * finally returns the value of the `fun()` call
266
246
 
267
- to change its behavior:
247
+ To change its behavior:
268
248
  * Set `mg.block_prints_location = False` to skip printing the source location.
269
249
  * Set `mg.press_enter_message = None` to skip printing "Press &lt;Enter&gt; to continue...".
270
250
 
@@ -319,7 +299,6 @@ print( power_set(['a', 'b', 'c']) )
319
299
  [['a', 'b', 'c'], ['a', 'b'], ['a', 'c'], ['a'], ['b', 'c'], ['b'], ['c'], []]
320
300
  ```
321
301
 
322
-
323
302
  ## Debugging ##
324
303
 
325
304
  For the best debugging experience with memory_graph set for example expression:
@@ -463,7 +442,7 @@ class BinTree:
463
442
  tree = BinTree()
464
443
  n = 100
465
444
  for i in range(n):
466
- new_value = random.randrange(100)
445
+ new_value = random.randrange(n)
467
446
  tree.add(new_value)
468
447
  ```
469
448
  ![bin_tree.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/bin_tree.png)
@@ -534,6 +513,27 @@ Different aspects of memory_graph can be configured. The default configuration i
534
513
  - ***mg.config.type_to_slicer*** : dict
535
514
  - Maps each type to a Slicer. A slicer determines how many elements of a data type are shown in the graph to prevent the graph from getting too big. 'Slicer()' does no slicing, 'Slicer(1,2,3)' shows just 1 element at the beginning, 2 in the middle, and 3 at the end.
536
515
 
516
+ ### Simplified Graph ###
517
+ Memory_graph simplifies the visualization (and the viewer's mental model) by **not** showing separate nodes for immutable types like `bool`, `int`, `float`, `complex`, and `str` by default. This simplification can sometimes be slightly misleading. As in the example below, after a shallow copy, lists `a` and `b` technically share their `int` values, but the graph makes it appear as though `a` and `b` each have their own copies. However, since `int` is immutable, this simplification will never lead to unexpected changes—changing `a` won’t effect `b`.
518
+
519
+ The simplification strikes a balance: it is slightly misleading but keeps the graph clean and easy to understand and focuses on the mutable types where unexpected changes can occur. This is why it is the default behavior. If you do want to show separate nodes for `int` values, such as for educational purposes, you can simply remove `int` from the `mg.config.not_node_types` set:
520
+ ```python
521
+ import memory_graph as mg
522
+
523
+ a = [100, 200, 300]
524
+ b = a.copy()
525
+ mg.render(locals(), 'not_node_types1.png')
526
+
527
+ mg.config.not_node_types.remove(int) # now show separate nodes for int values
528
+
529
+ mg.render(locals(), 'not_node_types2.png')
530
+ ```
531
+ | ![not_node_types1](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/not_node_types1.png) | ![not_node_types2](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/not_node_types2.png) |
532
+ |:-----------------------------------------------------------:|:-------------------------------------------------------------:|
533
+ | not_node_types1.png — simplified | not_node_types2.png — technically correct |
534
+
535
+ Additionally, the simplification hides the [reuse of small int values](https://docs.python.org/3/c-api/long.html#c.PyLong_FromLong) in the current CPython implementation, an optimization that might otherwise confuse beginner Python programmers. For instance, after executing `a[1]+=1; b[1]+=1` the `201` value is, maybe surprisingly, still shared between `a` and `b`, whereas executing `a[2]+=1; b[2]+=1` does not result in sharing the `301` value.
536
+
537
537
  ### Temporary Configuration ###
538
538
  In addition to the global configuration, a temporary configuration can be set for a single `show()` or `render()` call to change the colors, orientation, and slicer. This example highlights a particular list element in red, gives it a horizontal orientation, and overwrites the default slicer for lists:
539
539
 
@@ -545,7 +545,7 @@ data = [ list(range(20)) for i in range(1,5)]
545
545
  highlight = data[2]
546
546
 
547
547
  mg.show( locals(),
548
- colors = {id(highlight): "red" }, # set color to "red"
548
+ colors = {id(highlight): "red" }, # set color to red
549
549
  vertical_orientations = {id(highlight): False }, # set horizontal orientation
550
550
  slicers = {id(highlight): Slicer()} # set no slicing
551
551
  )
@@ -736,7 +736,7 @@ display( mg.create_graph(mg.locals_jupyter()) ) # display the local variables in
736
736
  mg.block(display, mg.create_graph(mg.locals_jupyter()) ) # the same but blocked
737
737
  ```
738
738
 
739
- See for example [jupyter_example.ipynb](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/jupyter_example.ipynb).
739
+ See for example [jupyter_example.ipynb](https://raw.githubusercontent.com/bterwijn/memory_graph/main/src/jupyter_example.ipynb).
740
740
  ![jupyter_example.png](https://raw.githubusercontent.com/bterwijn/memory_graph/main/images/jupyter_example.png)
741
741
 
742
742
  ## ipython ##
@@ -758,3 +758,6 @@ We can also run memory_graph in the browser: <a href="https://bterwijn.github.io
758
758
  - Adobe Acrobat Reader [doesn't refresh a PDF file](https://superuser.com/questions/337011/windows-pdf-viewer-that-auto-refreshes-pdf-when-compiling-with-pdflatex) when it changes on disk and blocks updates which results in an `Could not open 'somefile.pdf' for writing : Permission denied` error. One solution is to install a PDF reader that does refresh ([Evince](https://www.fosshub.com/Evince.html), [Okular](https://okular.kde.org/), [SumatraPDF](https://www.sumatrapdfreader.org/), ...) and set it as the default PDF reader. Another solution is to `render()` the graph to a different output format and to open it manually.
759
759
 
760
760
  - When graph edges overlap it can be hard to distinguish them. Using an interactive graphviz viewer, such as [xdot](https://github.com/jrfonseca/xdot.py), on a '*.gv' DOT output file will help.
761
+
762
+ ### Invocation_Tree Package ###
763
+ The [memory_graph](https://pypi.org/project/memory-graph/) package visualizes your data. If instead you want to visualize function calls, check out the [invocation_tree](https://pypi.org/project/invocation-tree/) package.
Binary file
@@ -0,0 +1,41 @@
1
+ import memory_graph as mg
2
+ import bintrees
3
+
4
+ # Create an AVL tree
5
+ tree = bintrees.AVLTree()
6
+ tree.insert(10, "ten")
7
+ tree.insert(5, "five")
8
+ tree.insert(20, "twenty")
9
+ tree.insert(15, "fifteen")
10
+
11
+ mg.render(locals(), 'avltree_fail.png')
12
+
13
+ mg.config.type_to_color[bintrees.avltree.Node] = "sandybrown"
14
+ mg.render(locals(), 'avltree_color.png')
15
+
16
+ mg.config.type_to_node[bintrees.avltree.Node] = lambda data: mg.node_linear.Node_Linear(data, dir(data))
17
+ mg.config.type_to_slicer[bintrees.avltree.Node] = mg.slicer.Slicer()
18
+ mg.render(locals(), 'avltree_dir.png')
19
+
20
+ mg.config.type_to_node[bintrees.avltree.Node] = lambda data: mg.node_base.Node_Base(f"key:{data.key} value:{data.value}")
21
+ mg.render(locals(), 'avltree_base.png')
22
+
23
+ mg.config.type_to_node[bintrees.avltree.Node] = lambda data: mg.node_linear.Node_Linear(data,
24
+ ['left', data.left,
25
+ 'key', data.key,
26
+ 'value', data.value,
27
+ 'right', data.right])
28
+ mg.render(locals(), 'avltree_linear.png')
29
+
30
+ mg.config.type_to_node[bintrees.avltree.Node] = lambda data: mg.node_key_value.Node_Key_Value(data,
31
+ {'left': data.left,
32
+ 'key': data.key,
33
+ 'value': data.value,
34
+ 'right': data.right}.items())
35
+ mg.render(locals(), 'avltree_key_value.png')
36
+
37
+ mg.config.type_to_node[bintrees.avltree.Node] = lambda data: mg.node_table.Node_Table(data,
38
+ [[data.key, data.value],
39
+ [data.left, data.right]]
40
+ )
41
+ mg.render(locals(), 'avltree_table.png')
@@ -0,0 +1,26 @@
1
+ digraph memory_graph {
2
+ node [shape=plaintext]
3
+ node130513740275104 [label=<
4
+ <TABLE BORDER="0" CELLBORDER="1" CELLSPACING="0" CELLPADDING="0" BGCOLOR="white"><TR><TD PORT="table">
5
+ &lt;bintrees.avltree.Node object at 0x76b3992...
6
+ </TD></TR></TABLE>
7
+ > xlabel="Node"]
8
+ node130513740453920 [label=<
9
+ <TABLE BORDER="0" CELLBORDER="1" CELLSPACING="0" CELLPADDING="0" BGCOLOR="seagreen1"><TR><TD PORT="table">
10
+ <TABLE BORDER="0" CELLBORDER="0" CELLSPACING="5" CELLPADDING="0">
11
+ <TR><TD BORDER="1" STYLE="ROUNDED"> _root </TD><TD BORDER="1" STYLE="ROUNDED"> _count </TD></TR>
12
+ <TR><TD BORDER="1" PORT="ref0"> </TD><TD BORDER="1"> 4 </TD></TR>
13
+ </TABLE>
14
+ </TD></TR></TABLE>
15
+ > xlabel=AVLTree]
16
+ node130513740453920:ref0 -> node130513740275104:table [style=solid]
17
+ node130513742307200 [label=<
18
+ <TABLE BORDER="0" CELLBORDER="3" CELLSPACING="0" CELLPADDING="0" BGCOLOR="dodgerblue1"><TR><TD PORT="table">
19
+ <TABLE BORDER="0" CELLBORDER="0" CELLSPACING="5" CELLPADDING="0">
20
+ <TR><TD BORDER="1" STYLE="ROUNDED"> tree </TD></TR>
21
+ <TR><TD BORDER="1" PORT="ref0"> </TD></TR>
22
+ </TABLE>
23
+ </TD></TR></TABLE>
24
+ > xlabel=dict]
25
+ node130513742307200:ref0 -> node130513740453920:table [style=solid]
26
+ }
Binary file
Binary file
@@ -9,7 +9,7 @@ files=$(ls -v $name*.png)
9
9
  echo "creating gif with:"
10
10
  echo "$files"
11
11
 
12
- largest_size=$(identify -format "%Wx%H %f\n" $name*.png | sort -nr | head -n1)
12
+ largest_size=$(identify -format "%H %Wx%H %f\n" $name*.png | sort -nr | head -n1| awk '{print $2}')
13
13
  echo "largest_size: $largest_size"
14
14
 
15
15
  echo "resizing images"
@@ -24,6 +24,7 @@ python bin_tree.py
24
24
  python hash_set.py
25
25
 
26
26
  # configuration
27
+ python not_node_types.py
27
28
  python highlight.py
28
29
 
29
30
  # extensions
Binary file
Binary file
Binary file
Binary file
@@ -0,0 +1,20 @@
1
+ digraph memory_graph {
2
+ node [shape=plaintext]
3
+ node126810958314944 [label=<
4
+ <TABLE BORDER="0" CELLBORDER="1" CELLSPACING="0" CELLPADDING="0" BGCOLOR="lightcoral"><TR><TD PORT="table">
5
+ <TABLE BORDER="0" CELLBORDER="0" CELLSPACING="5" CELLPADDING="0">
6
+ <TR><TD><font color="#505050">0</font></TD><TD BORDER="1"> 0 </TD></TR>
7
+ <TR><TD><font color="#505050">1</font></TD><TD BORDER="1"> 1 </TD></TR>
8
+ </TABLE>
9
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