megadetector 5.0.7__tar.gz → 5.0.9__tar.gz
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- {megadetector-5.0.7/megadetector.egg-info → megadetector-5.0.9}/PKG-INFO +21 -17
- {megadetector-5.0.7 → megadetector-5.0.9}/README-package.md +19 -16
- {megadetector-5.0.7 → megadetector-5.0.9}/README.md +38 -33
- megadetector-5.0.9/api/__init__.py +0 -0
- megadetector-5.0.9/api/batch_processing/__init__.py +0 -0
- megadetector-5.0.9/api/batch_processing/api_core/__init__.py +0 -0
- megadetector-5.0.9/api/batch_processing/api_core/batch_service/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/batch_service/score.py +0 -1
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server_job_status_table.py +0 -1
- megadetector-5.0.9/api/batch_processing/api_core_support/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core_support/aggregate_results_manually.py +0 -1
- megadetector-5.0.9/api/batch_processing/api_support/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_support/summarize_daily_activity.py +0 -1
- megadetector-5.0.9/api/batch_processing/data_preparation/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/data_preparation/manage_local_batch.py +93 -79
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/data_preparation/manage_video_batch.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/integration/digiKam/xmp_integration.py +0 -1
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py +0 -1
- megadetector-5.0.9/api/batch_processing/postprocessing/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/add_max_conf.py +12 -12
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/categorize_detections_by_size.py +32 -14
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/combine_api_outputs.py +69 -55
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/compare_batch_results.py +114 -44
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/convert_output_format.py +62 -19
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/load_api_results.py +17 -20
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/md_to_coco.py +31 -21
- megadetector-5.0.9/api/batch_processing/postprocessing/md_to_labelme.py +330 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/merge_detections.py +40 -15
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/postprocess_batch_results.py +270 -186
- megadetector-5.0.9/api/batch_processing/postprocessing/remap_detection_categories.py +170 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/render_detection_confusion_matrix.py +75 -39
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/repeat_detection_elimination/find_repeat_detections.py +53 -44
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/repeat_detection_elimination/remove_repeat_detections.py +25 -14
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/repeat_detection_elimination/repeat_detections_core.py +244 -160
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/separate_detections_into_folders.py +159 -114
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/subset_json_detector_output.py +146 -169
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/postprocessing/top_folders_to_bottom.py +77 -43
- megadetector-5.0.9/api/synchronous/__init__.py +0 -0
- megadetector-5.0.9/api/synchronous/api_core/animal_detection_api/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/api_backend.py +0 -2
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/api_frontend.py +266 -268
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/config.py +35 -35
- megadetector-5.0.9/api/synchronous/api_core/tests/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/tests/load_test.py +109 -109
- megadetector-5.0.9/classification/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/aggregate_classifier_probs.py +21 -24
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/analyze_failed_images.py +11 -13
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/cache_batchapi_outputs.py +51 -51
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/create_classification_dataset.py +69 -68
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/crop_detections.py +54 -53
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/csv_to_json.py +97 -100
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/detect_and_crop.py +105 -105
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/evaluate_model.py +43 -42
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/identify_mislabeled_candidates.py +47 -46
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/json_to_azcopy_list.py +10 -10
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/json_validator.py +72 -71
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/map_classification_categories.py +44 -43
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/merge_classification_detection_output.py +68 -68
- megadetector-5.0.9/classification/prepare_classification_script.py +194 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/prepare_classification_script_mc.py +228 -228
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/run_classifier.py +27 -26
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/save_mislabeled.py +30 -30
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/train_classifier.py +20 -20
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/train_classifier_tf.py +21 -22
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/train_utils.py +10 -10
- megadetector-5.0.9/data_management/__init__.py +0 -0
- megadetector-5.0.9/data_management/annotations/__init__.py +0 -0
- megadetector-5.0.9/data_management/annotations/annotation_constants.py +34 -0
- megadetector-5.0.9/data_management/camtrap_dp_to_coco.py +238 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/cct_json_utils.py +107 -59
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/cct_to_md.py +176 -158
- megadetector-5.0.9/data_management/cct_to_wi.py +289 -0
- megadetector-5.0.9/data_management/coco_to_labelme.py +272 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/coco_to_yolo.py +86 -62
- megadetector-5.0.9/data_management/databases/__init__.py +0 -0
- megadetector-5.0.9/data_management/databases/add_width_and_height_to_db.py +33 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/databases/combine_coco_camera_traps_files.py +35 -31
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/databases/integrity_check_json_db.py +130 -83
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/databases/subset_json_db.py +25 -16
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/generate_crops_from_cct.py +27 -45
- megadetector-5.0.9/data_management/get_image_sizes.py +188 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/add_nacti_sizes.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/add_timestamps_to_icct.py +78 -78
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/animl_results_to_md_results.py +158 -160
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/auckland_doc_test_to_json.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/auckland_doc_to_json.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/awc_to_json.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/bellevue_to_json.py +15 -15
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/cacophony-thermal-importer.py +13 -13
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/carrizo_shrubfree_2018.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/carrizo_trail_cam_2017.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/cct_field_adjustments.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/channel_islands_to_cct.py +10 -10
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/eMammal/copy_and_unzip_emammal.py +1 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/ena24_to_json.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/filenames_to_json.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/helena_to_cct.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/idaho-camera-traps.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/idfg_iwildcam_lila_prep.py +10 -10
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/jb_csv_to_json.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/mcgill_to_json.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/missouri_to_json.py +18 -18
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/nacti_fieldname_adjustments.py +10 -10
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/noaa_seals_2019.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/pc_to_json.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/plot_wni_giraffes.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/prepare-noaa-fish-data-for-lila.py +359 -359
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/prepare_zsl_imerit.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/rspb_to_json.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/save_the_elephants_survey_A.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/save_the_elephants_survey_B.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/snapshot_safari_importer.py +26 -26
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/snapshot_safari_importer_reprise.py +665 -665
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/snapshot_serengeti_lila.py +14 -14
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/sulross_get_exif.py +8 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/timelapse_csv_set_to_json.py +11 -11
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/ubc_to_json.py +13 -13
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/umn_to_json.py +7 -7
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/wellington_to_json.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/wi_to_json.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/zamba_results_to_md_results.py +181 -181
- megadetector-5.0.9/data_management/labelme_to_coco.py +548 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/labelme_to_yolo.py +103 -60
- megadetector-5.0.9/data_management/lila/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/add_locations_to_island_camera_traps.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/add_locations_to_nacti.py +147 -147
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/create_lila_blank_set.py +114 -31
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/create_lila_test_set.py +8 -8
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/create_links_to_md_results_files.py +106 -106
- megadetector-5.0.9/data_management/lila/download_lila_subset.py +177 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/generate_lila_per_image_labels.py +56 -43
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/get_lila_annotation_counts.py +18 -15
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/get_lila_image_counts.py +11 -11
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/lila_common.py +103 -70
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/lila/test_lila_metadata_urls.py +132 -116
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/ocr_tools.py +173 -128
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/read_exif.py +161 -99
- megadetector-5.0.9/data_management/remap_coco_categories.py +84 -0
- megadetector-5.0.9/data_management/remove_exif.py +66 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/resize_coco_dataset.py +32 -44
- megadetector-5.0.9/data_management/wi_download_csv_to_coco.py +246 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/yolo_output_to_md_output.py +86 -73
- megadetector-5.0.9/data_management/yolo_to_coco.py +676 -0
- megadetector-5.0.9/detection/__init__.py +0 -0
- megadetector-5.0.9/detection/detector_training/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/process_video.py +85 -33
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/pytorch_detector.py +43 -25
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/run_detector.py +157 -72
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/run_detector_batch.py +189 -114
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/run_inference_with_yolov5_val.py +118 -51
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/run_tiled_inference.py +113 -42
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/tf_detector.py +51 -28
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/video_utils.py +606 -521
- megadetector-5.0.9/docs/source/conf.py +43 -0
- megadetector-5.0.9/md_utils/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/azure_utils.py +9 -9
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/ct_utils.py +249 -70
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/directory_listing.py +59 -64
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/md_tests.py +968 -862
- megadetector-5.0.9/md_utils/path_utils.py +1044 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/process_utils.py +157 -133
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/sas_blob_utils.py +20 -20
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/split_locations_into_train_val.py +45 -32
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/string_utils.py +33 -10
- megadetector-5.0.9/md_utils/url_utils.py +323 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/md_utils/write_html_image_list.py +51 -35
- megadetector-5.0.9/md_visualization/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/md_visualization/plot_utils.py +102 -109
- {megadetector-5.0.7 → megadetector-5.0.9}/md_visualization/render_images_with_thumbnails.py +34 -34
- megadetector-5.0.9/md_visualization/visualization_utils.py +1537 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/md_visualization/visualize_db.py +109 -58
- {megadetector-5.0.7 → megadetector-5.0.9}/md_visualization/visualize_detector_output.py +61 -42
- {megadetector-5.0.7 → megadetector-5.0.9/megadetector.egg-info}/PKG-INFO +21 -17
- {megadetector-5.0.7 → megadetector-5.0.9}/megadetector.egg-info/SOURCES.txt +27 -5
- {megadetector-5.0.7 → megadetector-5.0.9}/megadetector.egg-info/top_level.txt +1 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/pyproject.toml +2 -1
- megadetector-5.0.9/taxonomy_mapping/__init__.py +0 -0
- megadetector-5.0.9/taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py +491 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/map_new_lila_datasets.py +154 -154
- megadetector-5.0.9/taxonomy_mapping/prepare_lila_taxonomy_release.py +142 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/preview_lila_taxonomy.py +591 -591
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/retrieve_sample_image.py +12 -12
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/simple_image_download.py +11 -11
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/species_lookup.py +10 -10
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/taxonomy_csv_checker.py +18 -18
- {megadetector-5.0.7 → megadetector-5.0.9}/taxonomy_mapping/taxonomy_graph.py +47 -47
- megadetector-5.0.9/taxonomy_mapping/validate_lila_category_mappings.py +83 -0
- megadetector-5.0.7/api/batch_processing/postprocessing/md_to_labelme.py +0 -233
- megadetector-5.0.7/classification/prepare_classification_script.py +0 -191
- megadetector-5.0.7/data_management/annotations/annotation_constants.py +0 -47
- megadetector-5.0.7/data_management/cct_json_to_filename_json.py +0 -89
- megadetector-5.0.7/data_management/cct_to_csv.py +0 -140
- megadetector-5.0.7/data_management/cct_to_wi.py +0 -261
- megadetector-5.0.7/data_management/databases/add_width_and_height_to_db.py +0 -29
- megadetector-5.0.7/data_management/databases/remove_corrupted_images_from_db.py +0 -191
- megadetector-5.0.7/data_management/get_image_sizes.py +0 -144
- megadetector-5.0.7/data_management/labelme_to_coco.py +0 -398
- megadetector-5.0.7/data_management/lila/download_lila_subset.py +0 -175
- megadetector-5.0.7/data_management/remove_exif.py +0 -70
- megadetector-5.0.7/data_management/yolo_to_coco.py +0 -236
- megadetector-5.0.7/detection/detector_training/copy_checkpoints.py +0 -43
- megadetector-5.0.7/md_utils/path_utils.py +0 -544
- megadetector-5.0.7/md_utils/url_utils.py +0 -142
- megadetector-5.0.7/md_visualization/visualization_utils.py +0 -940
- megadetector-5.0.7/md_visualization/visualize_megadb.py +0 -183
- megadetector-5.0.7/taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py +0 -484
- megadetector-5.0.7/taxonomy_mapping/prepare_lila_taxonomy_release.py +0 -134
- megadetector-5.0.7/taxonomy_mapping/validate_lila_category_mappings.py +0 -76
- {megadetector-5.0.7 → megadetector-5.0.9}/LICENSE +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server_api_config.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server_app_config.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server_batch_job_manager.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server_orchestration.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/api_core/server_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/integration/digiKam/setup.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/integration/eMammal/test_scripts/config_template.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/data_management/annotations/annotation_constants.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/detector_training/copy_checkpoints.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/detector_training/model_main_tf2.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/process_video.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/pytorch_detector.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/run_detector.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/run_detector_batch.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/run_inference_with_yolov5_val.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/run_tiled_inference.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/tf_detector.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/detection/video_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/azure_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/ct_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/directory_listing.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/matlab_porting_tools.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/path_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/process_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/sas_blob_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/string_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/url_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_utils/write_html_image_list.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/api/synchronous/api_core/animal_detection_api/md_visualization/visualization_utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/efficientnet/__init__.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/efficientnet/model.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/classification/efficientnet/utils.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/eMammal/eMammal_helpers.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/eMammal/make_eMammal_json.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/snapshotserengeti/make_full_SS_json.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/data_management/importers/snapshotserengeti/make_per_season_SS_json.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/detection/detector_training/model_main_tf2.py +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/megadetector.egg-info/dependency_links.txt +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/megadetector.egg-info/requires.txt +0 -0
- {megadetector-5.0.7 → megadetector-5.0.9}/setup.cfg +0 -0
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Name: megadetector
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Summary: MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.
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Author-email: Your friendly neighborhood MegaDetector team <cameratraps@lila.science>
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SOFTWARE.
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Project-URL: Homepage, https://github.com/agentmorris/MegaDetector
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Project-URL: Documentation, https://megadetector.readthedocs.io
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Project-URL: Bug Reports, https://github.com/agentmorris/MegaDetector/issues
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Project-URL: Source, https://github.com/agentmorris/MegaDetector
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Keywords: camera traps,conservation,wildlife,ai
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# MegaDetector
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This package is a pip-installable version of the support/inference code for [MegaDetector](https://github.com/agentmorris/MegaDetector), an object detection model that helps conservation biologists spend less time doing boring things with camera trap images.
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This package is a pip-installable version of the support/inference code for [MegaDetector](https://github.com/agentmorris/MegaDetector), an object detection model that helps conservation biologists spend less time doing boring things with camera trap images. Complete documentation for this Python package is available at <megadetector.readthedocs.io>.
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If you aren't looking for the Python package specificaly, and you just want to learn more about what MegaDetector is all about, head over to the [MegaDetector repo](https://github.com/agentmorris/MegaDetector).
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## Reasons you probably aren't looking for this package
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### If you are an ecologist...
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If you are an ecologist looking to use MegaDetector to help you get through your camera trap images, you probably don't want this package. We recommend starting with our "[Getting started with MegaDetector](https://github.com/agentmorris/MegaDetector/blob/main/
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If you are an ecologist looking to use MegaDetector to help you get through your camera trap images, you probably don't want this package. We recommend starting with our "[Getting started with MegaDetector](https://github.com/agentmorris/MegaDetector/blob/main/getting-started.md)" page, then digging in to the [MegaDetector User Guide](https://github.com/agentmorris/MegaDetector/blob/main/megadetector.md), which will walk you through the process of using MegaDetector. That journey will <i>not</i> involve this Python package.
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## Examples of things you can do with this package
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# This will automatically download MDv5a; you can also specify a filename.
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model = run_detector.load_detector('MDV5A')
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## Contact
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This package is a pip-installable version of the support/inference code for [MegaDetector](https://github.com/agentmorris/MegaDetector), an object detection model that helps conservation biologists spend less time doing boring things with camera trap images. Complete documentation for this Python package is available at <megadetector.readthedocs.io>.
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If you are an ecologist looking to use MegaDetector to help you get through your camera trap images, you probably don't want this package. We recommend starting with our "[Getting started with MegaDetector](https://github.com/agentmorris/MegaDetector/blob/main/getting-started.md)" page, then digging in to the [MegaDetector User Guide](https://github.com/agentmorris/MegaDetector/blob/main/megadetector.md), which will walk you through the process of using MegaDetector. That journey will <i>not</i> involve this Python package.
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1. [What's MegaDetector all about?](#whats-megadetector-all-about)
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This repo contains the tools for training and running [MegaDetector](megadetector.md), an object detection model that does a pretty good job finding animals, people, and vehicles (and therefore is pretty good at finding empty images) in camera trap images in a variety of terrestrial ecosystems.
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The core functionality provided is:
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- Training and running [MegaDetector](megadetector.md).
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- Training and running some [species classifiers](classification) that are used in conjunction with MegaDetector.
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- Tools to [convert](data_management) frequently-used camera trap metadata formats into a common format.
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- A [batch processing API](https://github.com/agentmorris/MegaDetector/tree/main/api/batch_processing) that runs MegaDetector on large image collections, to accelerate population surveys.
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- A [real-time API](https://github.com/agentmorris/MegaDetector/tree/main/api/synchronous) that runs MegaDetector (and some species classifiers) synchronously, primarily to support biosecurity applications.
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MegaDetector was initially developed by the [Microsoft AI for Earth program](https://www.microsoft.com/en-us/ai/ai-for-earth); this repo was forked from the microsoft/cameratraps repo and is maintained by the original MegaDetector developers (who are no longer at Microsoft, but are absolutely fantastically eternally grateful to Microsoft for the investment and commitment that made MegaDetector happen).
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## What's MegaDetector all about?
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[MegaDetector](megadetector.md) is an
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This repo does not host the data used to train MegaDetector, but we work with our collaborators to make data and annotations available whenever possible on [lila.science](http://lila.science). See the [MegaDetector training data](megadetector.md#can-you-share-the-training-data) section to learn more about the data used to train MegaDetector.
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[MegaDetector](megadetector.md) is an AI model that identifies animals, people, and vehicles in camera trap images (which also makes it useful for eliminating blank images). This model is trained on several million images from a variety of ecosystems.
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Here's a “teaser” image of what MegaDetector output looks like:
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## How do I get started with MegaDetector?
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If you're already familiar with MegaDetector and you're ready to run it on your data
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If you
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* If you are looking for a convenient tool to run MegaDetector, you don't need anything from this repository: check out [EcoAssist](https://github.com/PetervanLunteren/EcoAssist?tab=readme-ov-file).
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* If you're just <i>considering</i> the use of AI in your workflow, and you aren't even sure yet whether MegaDetector would be useful to you, we recommend reading the "[getting started with MegaDetector](getting-started.md)" page.
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* If you're already familiar with MegaDetector and you're ready to run it on your data, see the [MegaDetector User Guide](megadetector.md) for instructions on running MegaDetector.
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* If you're a programmer-type looking to use tools from this repo, check out the [Python package](https://pypi.org/project/megadetector/) that provides access to everything in this repo (yes, you guessed it, "pip install megadetector").
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* If you have any questions, or you want to tell us that MegaDetector was amazing/terrible on your images, <a href="mailto:cameratraps@lila.science">email us</a>!
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MegaDetector is just one of many tools that aims to make conservation biologists more efficient with AI. If you want to learn about other ways to use AI to accelerate camera trap workflows, check out our of the field, affectionately titled “[Everything I know about machine learning and camera traps](https://agentmorris.github.io/camera-trap-ml-survey/)”.
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## Who is using MegaDetector?
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We work with ecologists all over the world to help them spend less time annotating images and more time thinking about conservation. You can read a little more about how this works on our [getting started with MegaDetector](
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We work with ecologists all over the world to help them spend less time annotating images and more time thinking about conservation. You can read a little more about how this works on our [getting started with MegaDetector](getting-started.md) page.
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Here are a few of the organizations that have used MegaDetector... we're only listing organizations who (a) we know about and (b) have given us permission to refer to them here (or have posted publicly about their use of MegaDetector), so if you're using MegaDetector or other tools from this repo and would like to be added to this list, <a href="mailto:cameratraps@lila.science">email us</a>!
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* [Arizona Department of Environmental Quality](http://azdeq.gov/)
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* [Biometrio.earth](https://biometrio.earth/)
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* [Blackbird Environmental](https://blackbirdenv.com/)
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* [Camelot](https://camelotproject.org/)
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* [Canadian Parks and Wilderness Society (CPAWS) Northern Alberta Chapter](https://cpawsnab.org/)
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* [Dudek Camera Trap AI Image Toolkit (AIT)](https://dudek.com/services/wildlife-camera-trap-ai-image-processing-and-management/)
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* [EcoLogic Consultants Ltd.](https://www.consult-ecologic.com/)
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* [Estación Biológica de Doñana](http://www.ebd.csic.es/inicio)
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* [Indigenous Desert Alliance](https://www.indigenousdesertalliance.com/)
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* [Myall Lakes Dingo Project](https://carnivorecoexistence.info/myall-lakes-dingo-project/)
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* [Norwegian Institute for Nature Research](https://www.nina.no/english/Home)
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* [Okala](https://www.okala.io/)
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* [Point No Point Treaty Council](https://pnptc.org/)
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* [Ramat Hanadiv Nature Park](https://www.ramat-hanadiv.org.il/en/)
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* [SPEA (Portuguese Society for the Study of Birds)](https://spea.pt/en/)
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* [Cross-Cultural Ecology Lab](https://crossculturalecology.net/), Macquarie University
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* [DC Cat Count](https://hub.dccatcount.org/), led by the Humane Rescue Alliance
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* [Department of Fish and Wildlife Sciences](https://www.uidaho.edu/cnr/departments/fish-and-wildlife-sciences), University of Idaho
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* [Department of Society & Conservation](https://www.umt.edu/environment/about/departments/socon/), W.A. Franke College of Forestry & Conservation, University of Montana
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* [Department of Wildlife Ecology and Conservation](https://wec.ifas.ufl.edu/), University of Florida
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* [Ecology and Conservation of Amazonian Vertebrates Research Group](https://www.researchgate.net/lab/Fernanda-Michalski-Lab-4), Federal University of Amapá
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* [Gola Forest Programma](https://www.rspb.org.uk/our-work/conservation/projects/scientific-support-for-the-gola-forest-programme/), Royal Society for the Protection of Birds (RSPB)
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* [Graeme Shannon's Research Group](https://wildliferesearch.co.uk/group-1), Bangor University
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* [Grizzly Bear Recovery Program](https://www.fws.gov/office/grizzly-bear-recovery-program), U.S. Fish & Wildlife Service
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* [Hamaarag](https://hamaarag.org.il/), The Steinhardt Museum of Natural History, Tel Aviv University
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* [Institut des Science de la Forêt Tempérée](https://isfort.uqo.ca/) (ISFORT), Université du Québec en Outaouais
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* [Lab of Dr. Bilal Habib](https://bhlab.in/about), the Wildlife Institute of India
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* [Landscape Ecology Lab](https://www.concordia.ca/artsci/geography-planning-environment/research/labs/lel.html), Concordia University
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* [Mammal Spatial Ecology and Conservation Lab](https://labs.wsu.edu/dthornton/), Washington State University
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* [McLoughlin Lab in Population Ecology](http://mcloughlinlab.ca/lab/), University of Saskatchewan
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* [National Wildlife Refuge System, Southwest Region](https://www.fws.gov/about/region/southwest), U.S. Fish & Wildlife Service
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* [Seattle Urban Carnivore Project](https://www.zoo.org/seattlecarnivores), Woodland Park Zoo
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* [Serra dos Órgãos National Park](https://www.icmbio.gov.br/parnaserradosorgaos/), ICMBio
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* [Snapshot USA](https://emammal.si.edu/snapshot-usa), Smithsonian
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* [TROPECOLNET project](https://www.anabenitezlopez.com/research/global-change-biology/tropecolnet/), Museo Nacional de Ciencias Naturales
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* [Wildlife Coexistence Lab](https://wildlife.forestry.ubc.ca/), University of British Columbia
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* [Wildlife Research](https://www.dfw.state.or.us/wildlife/research/index.asp), Oregon Department of Fish and Wildlife
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* [Wildlife Division](https://www.michigan.gov/dnr/about/contact/wildlife), Michigan Department of Natural Resources
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* [School of Natural Sciences](https://www.utas.edu.au/natural-sciences), University of Tasmania ([story](https://www.utas.edu.au/about/news-and-stories/articles/2022/1204-innovative-camera-network-keeps-close-eye-on-tassie-wildlife))
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* [Kenai National Wildlife Refuge](https://www.fws.gov/refuge/kenai), U.S. Fish & Wildlife Service ([story](https://www.peninsulaclarion.com/sports/refuge-notebook-new-technology-increases-efficiency-of-refuge-cameras/))
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* [Idaho Department of Fish and Game](https://idfg.idaho.gov/) ([fancy PBS video](https://www.youtube.com/watch?v=uEsL8EZKpbA&t=261s&ab_channel=OutdoorIdaho))
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* [Australian Wildlife Conservancy](https://www.australianwildlife.org/) (blog posts [1](https://www.australianwildlife.org/cutting-edge-technology-delivering-efficiency-gains-in-conservation/), [2](https://www.australianwildlife.org/efficiency-gains-at-the-cutting-edge-of-technology/), [3](https://www.australianwildlife.org/federal-grant-to-fund-ai-supported-wildlife-recognisers))
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* [Bavarian Forest National Park](https://www.nationalpark-bayerischer-wald.bayern.de/english/index.htm) ([story](https://customers.microsoft.com/en-au/story/1667539539271247797-nationalparkbayerischerwald-azure-en))
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* [Environs Kimberley](https://www.environskimberley.org.au) ([blog post](https://www.environskimberley.org.au/ai_megadetector))
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* [Felidae Conservation Fund](https://felidaefund.org/) ([WildePod platform](https://wildepod.org/)) ([blog post](https://abhaykashyap.com/blog/ai-powered-camera-trap-image-annotation-system/))
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* [Island Conservation](https://www.islandconservation.org/) (blog posts [1](https://www.islandconservation.org/conservation-machine-learning/),[2](https://news.lenovo.com/island-conservation-machine-learning-solutions-nvidia-island-ecosystems/?sprinklrid=12869857824&linkId=356951919)) ([video](https://www.lenovo.com/content/dam/lenovo/iso/customer-references-coe/one-lenovo-customer-stories/wfh/videos/WFH-One-Lenovo-ENG-subtitles.mp4))
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* [Alberta Biodiversity Monitoring Institute (ABMI)](https://www.abmi.ca/home.html) ([WildTrax platform](https://www.wildtrax.ca/)) (blog posts [1](https://wildcams.ca/blog/the-abmi-visits-the-zoo/),[2](http://blog.abmi.ca/2023/06/14/making-wildtrax-its-not-a-kind-of-magic-behind-the-screen/))
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* [Shan Shui Conservation Center](http://en.shanshui.org/) ([blog post](https://mp.weixin.qq.com/s/iOIQF3ckj0-rEG4yJgerYw?fbclid=IwAR0alwiWbe3udIcFvqqwm7y5qgr9hZpjr871FZIa-ErGUukZ7yJ3ZhgCevs)) ([translated blog post](https://mp-weixin-qq-com.translate.goog/s/iOIQF3ckj0-rEG4yJgerYw?fbclid=IwAR0alwiWbe3udIcFvqqwm7y5qgr9hZpjr871FZIa-ErGUukZ7yJ3ZhgCevs&_x_tr_sl=auto&_x_tr_tl=en&_x_tr_hl=en&_x_tr_pto=wapp)) ([Web demo](https://cameratrap-ai.hinature.cn/home))
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* [Irvine Ranch Conservancy](http://www.irconservancy.org/) ([story](https://www.ocregister.com/2022/03/30/ai-software-is-helping-researchers-focus-on-learning-about-ocs-wild-animals/))
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* [Trapper](https://trapper-project.readthedocs.io/en/latest/overview.html) ([tutorial](https://trapper-project.readthedocs.io/en/latest/tutorial.html))
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* [Road Ecology Center](https://roadecology.ucdavis.edu/), University of California, Davis ([Wildlife Observer Network platform](https://wildlifeobserver.net/))
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* [The Nature Conservancy in California](https://www.nature.org/en-us/about-us/where-we-work/united-states/california/) ([Animl platform](https://github.com/tnc-ca-geo/animl-frontend))
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* [The Nature Conservancy in California](https://www.nature.org/en-us/about-us/where-we-work/united-states/california/) ([Animl platform](https://github.com/tnc-ca-geo/animl-frontend)) ([story](https://www.vision-systems.com/non-factory/environment-agriculture/article/14304433/the-nature-conservancy-brings-cameras-ai-to-invasive-species-prevention))
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* [San Diego Zoo Wildlife Alliance](https://science.sandiegozoo.org/) ([Animl R package](https://github.com/conservationtechlab/animl))
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* [TerrOïko](https://www.terroiko.fr/) ([OCAPI platform](https://www.terroiko.fr/ocapi))
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Also see:
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* The list of papers tagged "MegaDetector" on our [list of papers about ML and camera traps](https://agentmorris.github.io/camera-trap-ml-survey/#camera-trap-ml-papers)
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## Repo contents
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This repo is organized into the following folders...
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This repo contains the tools for training and running [MegaDetector](megadetector.md), an object detection model that does a pretty good job finding animals, people, and vehicles (and therefore is pretty good at finding empty images) in camera trap images in a variety of terrestrial ecosystems.
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The core functionality provided is:
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- Tools to [convert](data_management) frequently-used camera trap metadata formats into a common format.
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- A [batch processing API](https://github.com/agentmorris/MegaDetector/tree/main/api/batch_processing) that runs MegaDetector on large image collections, to accelerate population surveys.
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- A [real-time API](https://github.com/agentmorris/MegaDetector/tree/main/api/synchronous) that runs MegaDetector (and some species classifiers) synchronously, primarily to support biosecurity applications.
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This repo does not host the data used to train MegaDetector, but we work with our collaborators to make data and annotations available whenever possible on [lila.science](http://lila.science). See the [MegaDetector training data](megadetector.md#can-you-share-the-training-data) section to learn more about the data used to train MegaDetector.
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MegaDetector was initially developed by the [Microsoft AI for Earth program](https://www.microsoft.com/en-us/ai/ai-for-earth); this repo was forked from the microsoft/cameratraps repo and is maintained by the original MegaDetector developers (who are no longer at Microsoft, but are absolutely fantastically eternally grateful to Microsoft for the investment and commitment that made MegaDetector happen).
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### api
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### envs
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### md_visualization
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### sandbox
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