medgemma 0.1.0__tar.gz

medgemma-0.1.0/.gitignore

@@ -0,0 +1,46 @@
+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# IDEs
+.idea/
+.vscode/
+*.swp
+*.swo
+
+# Mac
+.DS_Store
+
+# Project specific
+medgemma-original/
+output/
+.pytest_cache/

medgemma-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: medgemma
+Version: 0.1.0
+Summary: Medical AI on Apple Silicon – MedGemma 1.5 4B via MLX
+Author: chiboko
+License-Expression: MIT
+Keywords: ai,apple-silicon,medgemma,medical,mlx
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Healthcare Industry
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: MacOS
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Requires-Python: >=3.10
+Requires-Dist: click>=8.0
+Requires-Dist: mlx-vlm>=0.3.10
+Provides-Extra: dev
+Requires-Dist: pytest-mock; extra == 'dev'
+Requires-Dist: pytest>=7.0; extra == 'dev'
+Description-Content-Type: text/markdown
+
+# medgemma
+
+Medical AI on Apple Silicon – MedGemma 1.5 4B via MLX.
+
+## Install
+
+```bash
+pip install medgemma
+```
+
+## Usage
+
+```python
+from medgemma import MedGemma
+
+mg = MedGemma()
+response = mg.ask("What are symptoms of diabetes?")
+print(response.text)
+```
+
+### CLI
+
+```bash
+medgemma ask "What are symptoms of diabetes?"
+medgemma ask "Describe this X-ray" --image xray.png
+medgemma setup
+medgemma info
+```

medgemma-0.1.0/README.md

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+# medgemma
+
+Medical AI on Apple Silicon – MedGemma 1.5 4B via MLX.
+
+## Install
+
+```bash
+pip install medgemma
+```
+
+## Usage
+
+```python
+from medgemma import MedGemma
+
+mg = MedGemma()
+response = mg.ask("What are symptoms of diabetes?")
+print(response.text)
+```
+
+### CLI
+
+```bash
+medgemma ask "What are symptoms of diabetes?"
+medgemma ask "Describe this X-ray" --image xray.png
+medgemma setup
+medgemma info
+```

medgemma-0.1.0/generate_resources.py

@@ -0,0 +1,81 @@
+
+import requests
+import sys
+
+def get_pypi_data(package_name, version):
+    print(f"Fetching {package_name} {version}...", file=sys.stderr, flush=True)
+    # PyPI JSON API: https://pypi.org/pypi/<package_name>/<version>/json
+    url = f"https://pypi.org/pypi/{package_name}/{version}/json"
+    try:
+        resp = requests.get(url, timeout=10)
+    except Exception as e:
+        print(f"Check failed for {package_name}: {e}", file=sys.stderr)
+        return None
+        
+    if resp.status_code != 200:
+        print(f"Error fetching {package_name} {version}: {resp.status_code}", file=sys.stderr)
+        return None
+    return resp.json()
+
+def generate_resource_block(package_name, version):
+    data = get_pypi_data(package_name, version)
+    if not data:
+        return ""
+    
+    # helper: prefer source tarball, else wheel suitable for mac/multi-platform
+    keys = ["sdist", "bdist_wheel"]
+    
+    urls = data['urls']
+    if not urls:
+        print(f"No URLs found for {package_name}", file=sys.stderr)
+        return ""
+        
+    # try to find sdist first
+    selected = next((u for u in urls if u['packagetype'] == 'sdist'), None)
+    
+    # if no sdist, find a universal wheel or macos wheel
+    if not selected:
+        for u in urls:
+            if u['packagetype'] == 'bdist_wheel':
+                fname = u['filename']
+                if "macosx" in fname or "any" in fname:
+                    selected = u
+                    break
+                    
+    selected = selected or urls[0]
+        
+    url = selected['url']
+    sha256 = selected['digests']['sha256']
+    
+    return f"""  resource "{package_name}" do
+    url "{url}"
+    sha256 "{sha256}"
+  end
+"""
+
+def main():
+    try:
+        with open("requirements.txt") as f:
+            lines = f.readlines()
+    except FileNotFoundError:
+        print("requirements.txt not found", file=sys.stderr)
+        return
+    
+    ignore_list = ["medgemma", "homebrew-pypi-poet", "setuptools"] 
+    
+    for line in lines:
+        line = line.strip()
+        if not line or line.startswith("#"): continue
+        if " @ " in line: continue # skip local/git deps
+        
+        parts = line.split("==")
+        if len(parts) != 2: continue
+        
+        pkg, ver = parts[0], parts[1]
+        
+        if pkg in ignore_list: continue
+        
+        print(generate_resource_block(pkg, ver))
+
+if __name__ == "__main__":
+    main()

medgemma-0.1.0/inject_resources.py

@@ -0,0 +1,13 @@
+
+with open("medgemma.rb") as f:
+    original = f.read()
+
+with open("resources.rb") as f:
+    resources = f.read()
+
+# insert resources before "def install"
+parts = original.split("  def install")
+new_content = parts[0] + "\n" + resources + "\n  def install" + parts[1]
+
+with open("medgemma.rb", "w") as f:
+    f.write(new_content)

medgemma-0.1.0/medgemma.rb

@@ -0,0 +1,357 @@
+class Medgemma < Formula
+  include Language::Python::Virtualenv
+
+  desc "Medical AI on Apple Silicon – MedGemma 1.5 4B via MLX"
+  homepage "https://github.com/chibokocl/medgemma"
+  url "https://github.com/chibokocl/medgemma.git", branch: "main"
+  version "0.1.0"
+  license "MIT"
+
+  depends_on "python@3.10"
+  depends_on "cmake" => :build
+
+
+  resource "aiohappyeyeballs" do
+    url "https://files.pythonhosted.org/packages/26/30/f84a107a9c4331c14b2b586036f40965c128aa4fee4dda5d3d51cb14ad54/aiohappyeyeballs-2.6.1.tar.gz"
+    sha256 "c3f9d0113123803ccadfdf3f0faa505bc78e6a72d1cc4806cbd719826e943558"
+  end
+
+  resource "aiohttp" do
+    url "https://files.pythonhosted.org/packages/50/42/32cf8e7704ceb4481406eb87161349abb46a57fee3f008ba9cb610968646/aiohttp-3.13.3.tar.gz"
+    sha256 "a949eee43d3782f2daae4f4a2819b2cb9b0c5d3b7f7a927067cc84dafdbb9f88"
+  end
+
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+    url "https://files.pythonhosted.org/packages/61/62/06741b579156360248d1ec624842ad0edf697050bbaf7c3e46394e106ad1/aiosignal-1.4.0.tar.gz"
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+  end
+
+  resource "xxhash" do
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+  end
+
+  resource "yarl" do
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+
+  def install
+    virtualenv_install_with_resources
+  end
+
+  test do
+    system "#{bin}/medgemma", "--help"
+  end
+end

medgemma-0.1.0/pyproject.toml

@@ -0,0 +1,37 @@
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "medgemma"
+dynamic = ["version"]
+description = "Medical AI on Apple Silicon – MedGemma 1.5 4B via MLX"
+readme = "README.md"
+license = "MIT"
+requires-python = ">=3.10"
+authors = [{ name = "chiboko" }]
+keywords = ["medical", "ai", "mlx", "apple-silicon", "medgemma"]
+classifiers = [
+    "Development Status :: 3 - Alpha",
+    "Intended Audience :: Healthcare Industry",
+    "Intended Audience :: Science/Research",
+    "Operating System :: MacOS",
+    "Programming Language :: Python :: 3",
+    "Topic :: Scientific/Engineering :: Artificial Intelligence",
+]
+dependencies = [
+    "mlx-vlm>=0.3.10",
+    "click>=8.0",
+]
+
+[project.optional-dependencies]
+dev = ["pytest>=7.0", "pytest-mock"]
+
+[project.scripts]
+medgemma = "medgemma.cli:cli"
+
+[tool.hatch.version]
+path = "src/medgemma/_version.py"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/medgemma"]

medgemma-0.1.0/requirements.txt

@@ -0,0 +1,70 @@
+aiohappyeyeballs==2.6.1
+aiohttp==3.13.3
+aiosignal==1.4.0
+annotated-doc==0.0.4
+annotated-types==0.7.0
+anyio==4.12.1
+attrs==25.4.0
+certifi==2026.1.4
+cffi==2.0.0
+charset-normalizer==3.4.4
+click==8.3.1
+datasets==4.5.0
+dill==0.4.0
+fastapi==0.128.0
+filelock==3.20.3
+frozenlist==1.8.0
+fsspec==2025.10.0
+h11==0.16.0
+hf-xet==1.2.0
+homebrew-pypi-poet==0.10.0
+httpcore==1.0.9
+httpx==0.28.1
+huggingface_hub==1.3.5
+idna==3.11
+iniconfig==2.3.0
+Jinja2==3.1.6
+MarkupSafe==3.0.3
+-e git+ssh://git@github.com/chibokocl/medgemma.git@16e562c0d3a5270a07bb8733a256acc70bbc7775#egg=medgemma
+mlx==0.30.4
+mlx-lm==0.30.5
+mlx-metal==0.30.4
+mlx-vlm==0.3.10
+multidict==6.7.1
+multiprocess==0.70.18
+numpy==2.4.2
+opencv-python==4.13.0.90
+packaging==26.0
+pandas==3.0.0
+pillow==12.1.0
+pluggy==1.6.0
+propcache==0.4.1
+protobuf==6.33.5
+pyarrow==23.0.0
+pycparser==3.0
+pydantic==2.12.5
+pydantic_core==2.41.5
+Pygments==2.19.2
+pytest==9.0.2
+pytest-mock==3.15.1
+python-dateutil==2.9.0.post0
+PyYAML==6.0.3
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+tokenizers==0.22.2
+tqdm==4.67.2
+transformers==5.0.0rc3
+typer-slim==0.21.1
+typing-inspection==0.4.2
+typing_extensions==4.15.0
+urllib3==2.6.3
+uvicorn==0.40.0
+xxhash==3.6.0
+yarl==1.22.0