medforge 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- medforge-0.1.0/.envrc +1 -0
- medforge-0.1.0/.github/workflows/ci.yml +52 -0
- medforge-0.1.0/.github/workflows/release.yml +77 -0
- medforge-0.1.0/.gitignore +23 -0
- medforge-0.1.0/Cargo.lock +243 -0
- medforge-0.1.0/Cargo.toml +16 -0
- medforge-0.1.0/LICENSE +21 -0
- medforge-0.1.0/PKG-INFO +101 -0
- medforge-0.1.0/README.md +75 -0
- medforge-0.1.0/benches/bench_parser.py +110 -0
- medforge-0.1.0/flake.lock +75 -0
- medforge-0.1.0/flake.nix +49 -0
- medforge-0.1.0/pyproject.toml +39 -0
- medforge-0.1.0/python/medforge/__init__.py +6 -0
- medforge-0.1.0/python/medforge/__init__.pyi +102 -0
- medforge-0.1.0/python/medforge/py.typed +0 -0
- medforge-0.1.0/src/escape.rs +132 -0
- medforge-0.1.0/src/lib.rs +37 -0
- medforge-0.1.0/src/mllp.rs +85 -0
- medforge-0.1.0/src/parser.rs +352 -0
- medforge-0.1.0/src/types.rs +411 -0
- medforge-0.1.0/tests/test_parser.py +367 -0
medforge-0.1.0/.envrc
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use flake
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name: CI
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on:
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push:
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branches: [main, master]
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pull_request:
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branches: [main, master]
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env:
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CARGO_TERM_COLOR: always
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jobs:
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# ── Rust tests ──────────────────────────────────────────────────────────────
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rust-tests:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: dtolnay/rust-toolchain@stable
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- run: cargo test --verbose
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# ── Python tests (build extension + pytest) ────────────────────────────────
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python-tests:
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [ubuntu-latest, macos-latest]
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python-version: ["3.11", "3.12", "3.13"]
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steps:
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- uses: actions/checkout@v4
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- uses: dtolnay/rust-toolchain@stable
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install maturin pytest
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- name: Build and install
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run: maturin develop
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- name: Run tests
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run: python -m pytest tests/ -v
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# ── Lint ────────────────────────────────────────────────────────────────────
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lint:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: dtolnay/rust-toolchain@stable
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with:
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components: clippy, rustfmt
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- run: cargo fmt --check
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- run: cargo clippy -- -D warnings
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name: Release
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on:
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push:
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tags:
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- "v*"
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permissions:
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contents: read
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jobs:
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# ── Build wheels for each platform ─────────────────────────────────────────
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build:
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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include:
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# Linux x86_64
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- os: ubuntu-latest
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target: x86_64
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# Linux aarch64
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- os: ubuntu-latest
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target: aarch64
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# macOS Apple Silicon
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- os: macos-latest
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target: aarch64
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# Windows
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- os: windows-latest
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target: x64
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steps:
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Build wheels
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uses: PyO3/maturin-action@v1
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with:
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target: ${{ matrix.target }}
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args: --release --out dist --interpreter 3.11 3.12 3.13
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manylinux: auto
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- uses: actions/upload-artifact@v4
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with:
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name: wheels-${{ matrix.os }}-${{ matrix.target }}
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path: dist
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# ── Build source distribution ──────────────────────────────────────────────
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sdist:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: Build sdist
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uses: PyO3/maturin-action@v1
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with:
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command: sdist
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args: --out dist
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- uses: actions/upload-artifact@v4
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with:
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name: wheels-sdist
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path: dist
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# ── Publish to PyPI ────────────────────────────────────────────────────────
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publish:
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needs: [build, sdist]
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runs-on: ubuntu-latest
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environment:
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name: pypi
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url: https://pypi.org/p/medforge
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permissions:
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id-token: write # trusted publishing
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steps:
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- uses: actions/download-artifact@v4
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with:
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pattern: wheels-*
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merge-multiple: true
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path: dist
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- uses: pypa/gh-action-pypi-publish@release/v1
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# This file is automatically @generated by Cargo.
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# It is not intended for manual editing.
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version = 4
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name = "autocfg"
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name = "cfg-if"
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name = "indoc"
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dependencies = [
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"rustversion",
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[[package]]
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name = "medforge"
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version = "0.1.0"
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dependencies = [
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dependencies = [
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dependencies = [
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dependencies = [
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"cfg-if",
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"libc",
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dependencies = [
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dependencies = [
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version = "0.23.5"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "fbc2201328f63c4710f68abdf653c89d8dbc2858b88c5d88b0ff38a75288a9da"
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dependencies = [
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"quote",
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"syn",
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]
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name = "pyo3-macros-backend"
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version = "0.23.5"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "fca6726ad0f3da9c9de093d6f116a93c1a38e417ed73bf138472cf4064f72028"
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dependencies = [
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"heck",
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name = "quote"
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version = "1.0.45"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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dependencies = [
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[[package]]
|
|
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|
+
name = "serde"
|
|
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|
+
version = "1.0.228"
|
|
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|
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source = "registry+https://github.com/rust-lang/crates.io-index"
|
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|
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checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e"
|
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dependencies = [
|
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"serde_core",
|
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|
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"serde_derive",
|
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]
|
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[[package]]
|
|
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|
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name = "serde_core"
|
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|
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version = "1.0.228"
|
|
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|
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source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
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|
+
checksum = "41d385c7d4ca58e59fc732af25c3983b67ac852c1a25000afe1175de458b67ad"
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dependencies = [
|
|
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|
+
"serde_derive",
|
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]
|
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[[package]]
|
|
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|
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name = "serde_derive"
|
|
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|
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version = "1.0.228"
|
|
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|
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source = "registry+https://github.com/rust-lang/crates.io-index"
|
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|
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checksum = "d540f220d3187173da220f885ab66608367b6574e925011a9353e4badda91d79"
|
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dependencies = [
|
|
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"proc-macro2",
|
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"quote",
|
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"syn",
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]
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[[package]]
|
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name = "serde_json"
|
|
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|
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version = "1.0.149"
|
|
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|
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source = "registry+https://github.com/rust-lang/crates.io-index"
|
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|
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checksum = "83fc039473c5595ace860d8c4fafa220ff474b3fc6bfdb4293327f1a37e94d86"
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|
+
dependencies = [
|
|
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|
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"itoa",
|
|
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|
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"memchr",
|
|
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|
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"serde",
|
|
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|
+
"serde_core",
|
|
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|
+
"zmij",
|
|
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|
+
]
|
|
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|
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|
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|
+
[[package]]
|
|
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|
+
name = "syn"
|
|
212
|
+
version = "2.0.117"
|
|
213
|
+
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
214
|
+
checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99"
|
|
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|
+
dependencies = [
|
|
216
|
+
"proc-macro2",
|
|
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|
+
"quote",
|
|
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|
+
"unicode-ident",
|
|
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|
+
]
|
|
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|
+
|
|
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|
+
[[package]]
|
|
222
|
+
name = "target-lexicon"
|
|
223
|
+
version = "0.12.16"
|
|
224
|
+
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
225
|
+
checksum = "61c41af27dd6d1e27b1b16b489db798443478cef1f06a660c96db617ba5de3b1"
|
|
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|
+
|
|
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|
+
[[package]]
|
|
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|
+
name = "unicode-ident"
|
|
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|
+
version = "1.0.24"
|
|
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|
+
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
231
|
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checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
|
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|
+
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|
+
[[package]]
|
|
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|
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name = "unindent"
|
|
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|
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version = "0.2.4"
|
|
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|
+
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
237
|
+
checksum = "7264e107f553ccae879d21fbea1d6724ac785e8c3bfc762137959b5802826ef3"
|
|
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|
+
|
|
239
|
+
[[package]]
|
|
240
|
+
name = "zmij"
|
|
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|
+
version = "1.0.21"
|
|
242
|
+
source = "registry+https://github.com/rust-lang/crates.io-index"
|
|
243
|
+
checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa"
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
[package]
|
|
2
|
+
name = "medforge"
|
|
3
|
+
version = "0.1.0"
|
|
4
|
+
edition = "2024"
|
|
5
|
+
description = "High-performance HL7v2 message parser with Python bindings"
|
|
6
|
+
license = "MIT"
|
|
7
|
+
readme = "README.md"
|
|
8
|
+
|
|
9
|
+
[lib]
|
|
10
|
+
name = "medforge"
|
|
11
|
+
crate-type = ["cdylib"]
|
|
12
|
+
|
|
13
|
+
[dependencies]
|
|
14
|
+
pyo3 = { version = "0.23", features = ["extension-module"] }
|
|
15
|
+
serde = { version = "1", features = ["derive"] }
|
|
16
|
+
serde_json = "1"
|
medforge-0.1.0/LICENSE
ADDED
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
MIT License
|
|
2
|
+
|
|
3
|
+
Copyright (c) 2026 ironpipe contributors
|
|
4
|
+
|
|
5
|
+
Permission is hereby granted, free of charge, to any person obtaining a copy
|
|
6
|
+
of this software and associated documentation files (the "Software"), to deal
|
|
7
|
+
in the Software without restriction, including without limitation the rights
|
|
8
|
+
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
9
|
+
copies of the Software, and to permit persons to whom the Software is
|
|
10
|
+
furnished to do so, subject to the following conditions:
|
|
11
|
+
|
|
12
|
+
The above copyright notice and this permission notice shall be included in all
|
|
13
|
+
copies or substantial portions of the Software.
|
|
14
|
+
|
|
15
|
+
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
|
16
|
+
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
|
17
|
+
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
|
18
|
+
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
|
19
|
+
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
|
20
|
+
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
|
21
|
+
SOFTWARE.
|
medforge-0.1.0/PKG-INFO
ADDED
|
@@ -0,0 +1,101 @@
|
|
|
1
|
+
Metadata-Version: 2.4
|
|
2
|
+
Name: medforge
|
|
3
|
+
Version: 0.1.0
|
|
4
|
+
Classifier: Programming Language :: Rust
|
|
5
|
+
Classifier: Programming Language :: Python :: Implementation :: CPython
|
|
6
|
+
Classifier: Programming Language :: Python :: 3.11
|
|
7
|
+
Classifier: Programming Language :: Python :: 3.12
|
|
8
|
+
Classifier: Programming Language :: Python :: 3.13
|
|
9
|
+
Classifier: Intended Audience :: Healthcare Industry
|
|
10
|
+
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
|
|
11
|
+
Classifier: License :: OSI Approved :: MIT License
|
|
12
|
+
Classifier: Development Status :: 4 - Beta
|
|
13
|
+
Classifier: Typing :: Typed
|
|
14
|
+
Requires-Dist: pytest ; extra == 'dev'
|
|
15
|
+
Requires-Dist: pytest-benchmark ; extra == 'dev'
|
|
16
|
+
Provides-Extra: dev
|
|
17
|
+
License-File: LICENSE
|
|
18
|
+
Summary: High-performance HL7v2 message parser powered by Rust
|
|
19
|
+
Keywords: hl7,hl7v2,parser,healthcare,medical,rust
|
|
20
|
+
License: MIT
|
|
21
|
+
Requires-Python: >=3.11
|
|
22
|
+
Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
|
|
23
|
+
Project-URL: Issues, https://github.com/medforge/medforge/issues
|
|
24
|
+
Project-URL: Repository, https://github.com/medforge/medforge
|
|
25
|
+
|
|
26
|
+
# medforge 🔧
|
|
27
|
+
|
|
28
|
+
High-performance HL7v2 message parser for Python, powered by Rust.
|
|
29
|
+
|
|
30
|
+
## Features
|
|
31
|
+
|
|
32
|
+
- **Fast** — Rust core for 10-50× faster parsing vs pure-Python HL7 libraries
|
|
33
|
+
- **Complete** — Full HL7v2 hierarchy: Message → Segment → Field → Component → Sub-component
|
|
34
|
+
- **Ergonomic** — Pythonic API with terser-style path access (`msg["PID-5-1"]`)
|
|
35
|
+
- **MLLP-aware** — Automatic detection and stripping of MLLP framing
|
|
36
|
+
- **Escape-aware** — Decodes HL7 escape sequences (`\F\`, `\S\`, `\T\`, `\R\`, `\E\`)
|
|
37
|
+
- **Serializable** — Built-in `.to_dict()` and `.to_json()` methods
|
|
38
|
+
|
|
39
|
+
## Installation
|
|
40
|
+
|
|
41
|
+
```bash
|
|
42
|
+
pip install medforge
|
|
43
|
+
```
|
|
44
|
+
|
|
45
|
+
### From source (requires Rust)
|
|
46
|
+
|
|
47
|
+
```bash
|
|
48
|
+
git clone https://github.com/your-org/medforge.git
|
|
49
|
+
cd medforge
|
|
50
|
+
nix develop # or install Rust + maturin manually
|
|
51
|
+
maturin develop
|
|
52
|
+
```
|
|
53
|
+
|
|
54
|
+
## Quick Start
|
|
55
|
+
|
|
56
|
+
```python
|
|
57
|
+
import medforge
|
|
58
|
+
|
|
59
|
+
msg = medforge.parse(
|
|
60
|
+
"MSH|^~\\&|EPIC|HOSPITAL|RECV|FAC|20260318||ADT^A01^ADT_A01|MSG001|P|2.5.1\r"
|
|
61
|
+
"PID|1||MRN12345^^^MRN||DOE^JANE^M^^DR||19850315|F\r"
|
|
62
|
+
"PV1|1|I|4EAST^401^1^^^N||||1234^SMITH^ROBERT^J^^^MD\r"
|
|
63
|
+
"DG1|1||I10^Essential Hypertension^ICD10||20260318|A"
|
|
64
|
+
)
|
|
65
|
+
|
|
66
|
+
# Segment access
|
|
67
|
+
pid = msg.segment("PID")
|
|
68
|
+
all_dg1 = msg.segments_by_name("DG1")
|
|
69
|
+
|
|
70
|
+
# Field access (1-indexed, per HL7 spec)
|
|
71
|
+
patient_name = pid.field(5) # Field("DOE^JANE^M^^DR")
|
|
72
|
+
patient_name.component(1) # "DOE"
|
|
73
|
+
patient_name.component(2) # "JANE"
|
|
74
|
+
|
|
75
|
+
# Terser-style shorthand
|
|
76
|
+
msg["PID-5-1"] # "DOE"
|
|
77
|
+
msg["MSH-9-1"] # "ADT"
|
|
78
|
+
|
|
79
|
+
# MSH convenience properties
|
|
80
|
+
msg.message_type # ("ADT", "A01")
|
|
81
|
+
msg.control_id # "MSG001"
|
|
82
|
+
msg.version # "2.5.1"
|
|
83
|
+
|
|
84
|
+
# Serialization
|
|
85
|
+
msg.to_dict() # Python dict
|
|
86
|
+
msg.to_json() # JSON string
|
|
87
|
+
```
|
|
88
|
+
|
|
89
|
+
## Development
|
|
90
|
+
|
|
91
|
+
```bash
|
|
92
|
+
nix develop # enter dev shell
|
|
93
|
+
maturin develop # build + install in dev mode
|
|
94
|
+
cargo test # Rust tests
|
|
95
|
+
python -m pytest tests/ -v # Python tests
|
|
96
|
+
```
|
|
97
|
+
|
|
98
|
+
## License
|
|
99
|
+
|
|
100
|
+
MIT
|
|
101
|
+
|
medforge-0.1.0/README.md
ADDED
|
@@ -0,0 +1,75 @@
|
|
|
1
|
+
# medforge 🔧
|
|
2
|
+
|
|
3
|
+
High-performance HL7v2 message parser for Python, powered by Rust.
|
|
4
|
+
|
|
5
|
+
## Features
|
|
6
|
+
|
|
7
|
+
- **Fast** — Rust core for 10-50× faster parsing vs pure-Python HL7 libraries
|
|
8
|
+
- **Complete** — Full HL7v2 hierarchy: Message → Segment → Field → Component → Sub-component
|
|
9
|
+
- **Ergonomic** — Pythonic API with terser-style path access (`msg["PID-5-1"]`)
|
|
10
|
+
- **MLLP-aware** — Automatic detection and stripping of MLLP framing
|
|
11
|
+
- **Escape-aware** — Decodes HL7 escape sequences (`\F\`, `\S\`, `\T\`, `\R\`, `\E\`)
|
|
12
|
+
- **Serializable** — Built-in `.to_dict()` and `.to_json()` methods
|
|
13
|
+
|
|
14
|
+
## Installation
|
|
15
|
+
|
|
16
|
+
```bash
|
|
17
|
+
pip install medforge
|
|
18
|
+
```
|
|
19
|
+
|
|
20
|
+
### From source (requires Rust)
|
|
21
|
+
|
|
22
|
+
```bash
|
|
23
|
+
git clone https://github.com/your-org/medforge.git
|
|
24
|
+
cd medforge
|
|
25
|
+
nix develop # or install Rust + maturin manually
|
|
26
|
+
maturin develop
|
|
27
|
+
```
|
|
28
|
+
|
|
29
|
+
## Quick Start
|
|
30
|
+
|
|
31
|
+
```python
|
|
32
|
+
import medforge
|
|
33
|
+
|
|
34
|
+
msg = medforge.parse(
|
|
35
|
+
"MSH|^~\\&|EPIC|HOSPITAL|RECV|FAC|20260318||ADT^A01^ADT_A01|MSG001|P|2.5.1\r"
|
|
36
|
+
"PID|1||MRN12345^^^MRN||DOE^JANE^M^^DR||19850315|F\r"
|
|
37
|
+
"PV1|1|I|4EAST^401^1^^^N||||1234^SMITH^ROBERT^J^^^MD\r"
|
|
38
|
+
"DG1|1||I10^Essential Hypertension^ICD10||20260318|A"
|
|
39
|
+
)
|
|
40
|
+
|
|
41
|
+
# Segment access
|
|
42
|
+
pid = msg.segment("PID")
|
|
43
|
+
all_dg1 = msg.segments_by_name("DG1")
|
|
44
|
+
|
|
45
|
+
# Field access (1-indexed, per HL7 spec)
|
|
46
|
+
patient_name = pid.field(5) # Field("DOE^JANE^M^^DR")
|
|
47
|
+
patient_name.component(1) # "DOE"
|
|
48
|
+
patient_name.component(2) # "JANE"
|
|
49
|
+
|
|
50
|
+
# Terser-style shorthand
|
|
51
|
+
msg["PID-5-1"] # "DOE"
|
|
52
|
+
msg["MSH-9-1"] # "ADT"
|
|
53
|
+
|
|
54
|
+
# MSH convenience properties
|
|
55
|
+
msg.message_type # ("ADT", "A01")
|
|
56
|
+
msg.control_id # "MSG001"
|
|
57
|
+
msg.version # "2.5.1"
|
|
58
|
+
|
|
59
|
+
# Serialization
|
|
60
|
+
msg.to_dict() # Python dict
|
|
61
|
+
msg.to_json() # JSON string
|
|
62
|
+
```
|
|
63
|
+
|
|
64
|
+
## Development
|
|
65
|
+
|
|
66
|
+
```bash
|
|
67
|
+
nix develop # enter dev shell
|
|
68
|
+
maturin develop # build + install in dev mode
|
|
69
|
+
cargo test # Rust tests
|
|
70
|
+
python -m pytest tests/ -v # Python tests
|
|
71
|
+
```
|
|
72
|
+
|
|
73
|
+
## License
|
|
74
|
+
|
|
75
|
+
MIT
|