mdmp-protocol 0.1.0__tar.gz

mdmp_protocol-0.1.0/LICENSE

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mdmp_protocol-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: mdmp-protocol
+Version: 0.1.0
+Summary: MDMP core protocol for dataset contracts, grading, fingerprints, and AI lineage cards
+Author: IINTS / MDMP
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/python35/MDMP
+Project-URL: Documentation, https://python35.github.io/MDMP/
+Project-URL: Repository, https://github.com/python35/MDMP
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Operating System :: OS Independent
+Classifier: Development Status :: 3 - Alpha
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: pandas>=2.0
+Requires-Dist: numpy>=1.24
+Requires-Dist: PyYAML>=6.0
+Requires-Dist: typer>=0.12
+Dynamic: license-file
+
+# MDMP
+
+MDMP is an open protocol and tooling stack for dataset quality and AI training provenance.
+
+**Tagline:** _Know what your AI learned from._
+
+## 30-second summary
+
+MDMP gives every dataset a contract, a grade, and a fingerprint.
+It gives every model a lineage card that points to exactly which dataset fingerprints were used.
+
+- Contract: schema, ranges, consent metadata.
+- Validation: reproducible checks + deterministic grade.
+- Fingerprint: immutable dataset identity (`sha256:...`).
+- Lineage card: model-to-dataset traceability with stale detection.
+
+## Install
+
+```bash
+python -m venv .venv
+source .venv/bin/activate
+python -m pip install -U pip
+pip install -e .
+```
+
+## Quick Start
+
+```bash
+mdmp init --flavor health --output contracts/mdmp_contract.yaml
+mdmp validate contracts/mdmp_contract.yaml data/demo_cgm.csv --output-json results/mdmp_report.json
+mdmp report results/mdmp_report.json --output-html results/mdmp_dashboard.html
+```
+
+## Core Commands
+
+```bash
+# grading + fingerprint
+mdmp grade contracts/mdmp_contract.yaml data/demo_cgm.csv
+mdmp fingerprint data/demo_cgm.csv
+
+# stale lineage lifecycle
+mdmp fingerprint-record data/demo_cgm.csv --output-json results/fingerprint.json --expires-days 365
+mdmp fingerprint-check results/fingerprint.json data/demo_cgm.csv
+mdmp lineage-card --model glucose_forecaster_v2 --dataset data/demo_cgm.csv --contract contracts/health_demo.yaml --output results/mdmp_model_card.yaml
+mdmp lineage-card-refresh results/mdmp_model_card.yaml
+
+# local registry scaffold
+mdmp registry init --registry registry/mdmp_registry.json
+mdmp registry push --registry registry/mdmp_registry.json --report results/mdmp_report.json --visibility public --model-id glucose_forecaster_v2
+mdmp registry lookup sha256:YOUR_FINGERPRINT --registry registry/mdmp_registry.json
+mdmp registry list --registry registry/mdmp_registry.json
+
+# Hugging Face section export
+mdmp hf-export --dataset-id python35/demo-cgm --report-json results/mdmp_report.json --output-md results/mdmp_hf_section.md
+```
+
+## Documentation
+
+- Spec: `MDMP_SPEC.md`
+- Docs index: `docs/index.md`
+- CLI reference: `docs/reference/cli.md`
+- Launch checklist: `docs/launch/launch-checklist.md`
+- Contributing: `CONTRIBUTING.md`
+
+## Release Automation
+
+- GitHub release workflow: `.github/workflows/release.yml`
+- PyPI publish workflow: `.github/workflows/publish-pypi.yml`
+- Docs deploy workflow: `.github/workflows/docs-site.yml`
+
+## Design Boundaries
+
+- MDMP stores metadata + fingerprints, not raw datasets.
+- Local-first workflow; cloud registry is optional.
+- Complementary to DVC / MLflow / W&B.
+
+## Status
+
+- Spec version: `v0.1-draft`
+- Research/provenance utility.
+- Not a medical device and not clinical decision support.
+
+## Integrations
+
+- IINTS integration guide: `docs/IINTS_INTEGRATION.md`

mdmp_protocol-0.1.0/README.md

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+# MDMP
+
+MDMP is an open protocol and tooling stack for dataset quality and AI training provenance.
+
+**Tagline:** _Know what your AI learned from._
+
+## 30-second summary
+
+MDMP gives every dataset a contract, a grade, and a fingerprint.
+It gives every model a lineage card that points to exactly which dataset fingerprints were used.
+
+- Contract: schema, ranges, consent metadata.
+- Validation: reproducible checks + deterministic grade.
+- Fingerprint: immutable dataset identity (`sha256:...`).
+- Lineage card: model-to-dataset traceability with stale detection.
+
+## Install
+
+```bash
+python -m venv .venv
+source .venv/bin/activate
+python -m pip install -U pip
+pip install -e .
+```
+
+## Quick Start
+
+```bash
+mdmp init --flavor health --output contracts/mdmp_contract.yaml
+mdmp validate contracts/mdmp_contract.yaml data/demo_cgm.csv --output-json results/mdmp_report.json
+mdmp report results/mdmp_report.json --output-html results/mdmp_dashboard.html
+```
+
+## Core Commands
+
+```bash
+# grading + fingerprint
+mdmp grade contracts/mdmp_contract.yaml data/demo_cgm.csv
+mdmp fingerprint data/demo_cgm.csv
+
+# stale lineage lifecycle
+mdmp fingerprint-record data/demo_cgm.csv --output-json results/fingerprint.json --expires-days 365
+mdmp fingerprint-check results/fingerprint.json data/demo_cgm.csv
+mdmp lineage-card --model glucose_forecaster_v2 --dataset data/demo_cgm.csv --contract contracts/health_demo.yaml --output results/mdmp_model_card.yaml
+mdmp lineage-card-refresh results/mdmp_model_card.yaml
+
+# local registry scaffold
+mdmp registry init --registry registry/mdmp_registry.json
+mdmp registry push --registry registry/mdmp_registry.json --report results/mdmp_report.json --visibility public --model-id glucose_forecaster_v2
+mdmp registry lookup sha256:YOUR_FINGERPRINT --registry registry/mdmp_registry.json
+mdmp registry list --registry registry/mdmp_registry.json
+
+# Hugging Face section export
+mdmp hf-export --dataset-id python35/demo-cgm --report-json results/mdmp_report.json --output-md results/mdmp_hf_section.md
+```
+
+## Documentation
+
+- Spec: `MDMP_SPEC.md`
+- Docs index: `docs/index.md`
+- CLI reference: `docs/reference/cli.md`
+- Launch checklist: `docs/launch/launch-checklist.md`
+- Contributing: `CONTRIBUTING.md`
+
+## Release Automation
+
+- GitHub release workflow: `.github/workflows/release.yml`
+- PyPI publish workflow: `.github/workflows/publish-pypi.yml`
+- Docs deploy workflow: `.github/workflows/docs-site.yml`
+
+## Design Boundaries
+
+- MDMP stores metadata + fingerprints, not raw datasets.
+- Local-first workflow; cloud registry is optional.
+- Complementary to DVC / MLflow / W&B.
+
+## Status
+
+- Spec version: `v0.1-draft`
+- Research/provenance utility.
+- Not a medical device and not clinical decision support.
+
+## Integrations
+
+- IINTS integration guide: `docs/IINTS_INTEGRATION.md`

mdmp_protocol-0.1.0/pyproject.toml

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+[build-system]
+requires = ["setuptools>=68", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "mdmp-protocol"
+version = "0.1.0"
+description = "MDMP core protocol for dataset contracts, grading, fingerprints, and AI lineage cards"
+readme = "README.md"
+requires-python = ">=3.10"
+license = "Apache-2.0"
+authors = [{name = "IINTS / MDMP"}]
+classifiers = [
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Operating System :: OS Independent",
+  "Development Status :: 3 - Alpha",
+]
+dependencies = [
+  "pandas>=2.0",
+  "numpy>=1.24",
+  "PyYAML>=6.0",
+  "typer>=0.12",
+]
+
+[project.urls]
+Homepage = "https://github.com/python35/MDMP"
+Documentation = "https://python35.github.io/MDMP/"
+Repository = "https://github.com/python35/MDMP"
+
+[project.scripts]
+mdmp = "mdmp_core.cli:app"
+
+[tool.setuptools]
+package-dir = {"" = "src"}
+
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]

mdmp_protocol-0.1.0/setup.cfg

@@ -0,0 +1,4 @@
+[egg_info]
+tag_build = 
+tag_date = 0
+

mdmp_protocol-0.1.0/src/mdmp_ai/__init__.py

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+from .lineage import DatasetRef, LineageCard, LineageTracker, load_lineage_card
+
+__all__ = ["DatasetRef", "LineageCard", "LineageTracker", "load_lineage_card"]

mdmp_protocol-0.1.0/src/mdmp_ai/lineage.py

@@ -0,0 +1,198 @@
+from __future__ import annotations
+
+from dataclasses import dataclass, field
+from datetime import datetime, timezone
+from pathlib import Path
+from typing import Any, Dict, List, Optional
+import json
+
+import pandas as pd
+import yaml
+
+from mdmp_core.contracts import load_contract
+from mdmp_core.fingerprint import check_fingerprint, compute_fingerprint
+from mdmp_core.runner import ContractRunner
+
+
+def _now_iso() -> str:
+    return datetime.now(timezone.utc).strftime("%Y-%m-%dT%H:%M:%SZ")
+
+
+@dataclass
+class DatasetRef:
+    path: str
+    fingerprint: str
+    grade: str
+    rows_used: int
+    date_validated: str
+    consent: str
+    contract_fingerprint: str
+    expires: str
+    status: str = "valid"
+    stale_reason: Optional[str] = None
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {
+            "path": self.path,
+            "fingerprint": self.fingerprint,
+            "grade": self.grade,
+            "rows_used": self.rows_used,
+            "date_validated": self.date_validated,
+            "consent": self.consent,
+            "contract_fingerprint": self.contract_fingerprint,
+            "expires": self.expires,
+            "status": self.status,
+            "stale_reason": self.stale_reason,
+        }
+
+    @classmethod
+    def from_dict(cls, payload: Dict[str, Any]) -> "DatasetRef":
+        return cls(
+            path=str(payload.get("path", "")),
+            fingerprint=str(payload.get("fingerprint", "")),
+            grade=str(payload.get("grade", "draft")),
+            rows_used=int(payload.get("rows_used", 0)),
+            date_validated=str(payload.get("date_validated", "")),
+            consent=str(payload.get("consent", "not_verified")),
+            contract_fingerprint=str(payload.get("contract_fingerprint", "")),
+            expires=str(payload.get("expires", "")),
+            status=str(payload.get("status", "valid")),
+            stale_reason=payload.get("stale_reason"),
+        )
+
+
+@dataclass
+class LineageCard:
+    model_name: str
+    training_date: str
+    datasets: List[DatasetRef] = field(default_factory=list)
+
+    @property
+    def stale_datasets(self) -> List[DatasetRef]:
+        return [row for row in self.datasets if row.status == "stale"]
+
+    @property
+    def lineage_status(self) -> str:
+        return "stale" if self.stale_datasets else "valid"
+
+    def to_dict(self) -> Dict[str, Any]:
+        return {
+            "model": {
+                "name": self.model_name,
+                "training_date": self.training_date,
+                "lineage_status": self.lineage_status,
+                "stale_lineage": bool(self.stale_datasets),
+                "stale_datasets": [row.fingerprint for row in self.stale_datasets],
+                "trained_on": [row.to_dict() for row in self.datasets],
+            }
+        }
+
+    @classmethod
+    def from_dict(cls, payload: Dict[str, Any]) -> "LineageCard":
+        model = payload.get("model", {}) if isinstance(payload, dict) else {}
+        trained_on = model.get("trained_on", []) if isinstance(model, dict) else []
+        rows: List[DatasetRef] = []
+        if isinstance(trained_on, list):
+            for entry in trained_on:
+                if isinstance(entry, dict):
+                    rows.append(DatasetRef.from_dict(entry))
+        return cls(
+            model_name=str(model.get("name", "unknown_model")),
+            training_date=str(model.get("training_date", _now_iso())),
+            datasets=rows,
+        )
+
+    def export(self, output_path: str | Path) -> Dict[str, Any]:
+        payload = self.to_dict()
+        output = Path(output_path)
+        output.parent.mkdir(parents=True, exist_ok=True)
+        if output.suffix.lower() in {".yaml", ".yml"}:
+            output.write_text(yaml.safe_dump(payload, sort_keys=False), encoding="utf-8")
+        else:
+            output.write_text(json.dumps(payload, indent=2), encoding="utf-8")
+        return payload
+
+    def refresh(self, *, data_dir: Optional[Path] = None) -> "LineageCard":
+        for dataset in self.datasets:
+            resolved_path = Path(dataset.path)
+            if not resolved_path.is_file() and data_dir is not None:
+                candidate = data_dir / dataset.path
+                if candidate.is_file():
+                    resolved_path = candidate
+            if not resolved_path.is_file():
+                dataset.status = "stale"
+                dataset.stale_reason = "dataset_not_found"
+                continue
+
+            checked = check_fingerprint(
+                {
+                    "fingerprint": dataset.fingerprint,
+                    "expires": dataset.expires,
+                    "status": dataset.status,
+                    "stale_reason": dataset.stale_reason,
+                },
+                data_path=resolved_path,
+            )
+            dataset.status = str(checked.get("status", "stale"))
+            dataset.stale_reason = checked.get("stale_reason")
+        return self
+
+
+def load_lineage_card(path: str | Path) -> LineageCard:
+    card_path = Path(path)
+    raw = card_path.read_text(encoding="utf-8")
+    if card_path.suffix.lower() in {".yaml", ".yml"}:
+        payload = yaml.safe_load(raw) or {}
+    else:
+        payload = json.loads(raw)
+    if not isinstance(payload, dict):
+        raise ValueError("Lineage card root must be a mapping")
+    return LineageCard.from_dict(payload)
+
+
+@dataclass
+class LineageTracker:
+    datasets: list[DatasetRef] = field(default_factory=list)
+    model_name: str | None = None
+
+    def register_dataset(
+        self,
+        dataset_path: str | Path,
+        *,
+        contract: str | Path,
+        expires_days: int = 365,
+    ) -> Dict[str, Any]:
+        dataset_path = Path(dataset_path)
+        contract_path = Path(contract)
+        df = pd.read_csv(dataset_path)
+        contract_obj = load_contract(contract_path)
+        validation = ContractRunner(contract_obj).run(df)
+        fp_record = compute_fingerprint(dataset_path, expires_days=expires_days)
+
+        row = DatasetRef(
+            path=str(dataset_path),
+            fingerprint=str(fp_record["fingerprint"]),
+            grade=validation.grade,
+            rows_used=validation.row_count,
+            date_validated=validation.created_utc,
+            consent="verified" if validation.consent_verified else "not_verified",
+            contract_fingerprint=f"sha256:{validation.contract_fingerprint_sha256}",
+            expires=str(fp_record["expires"]),
+            status=str(fp_record["status"]),
+            stale_reason=fp_record.get("stale_reason"),
+        )
+        self.datasets.append(row)
+        return row.to_dict()
+
+    def attach_to_model(self, model_name: str) -> None:
+        self.model_name = model_name
+
+    def export_card(self, output_path: str | Path) -> Dict[str, Any]:
+        if not self.model_name:
+            raise ValueError("Call attach_to_model() before export_card()")
+        card = LineageCard(
+            model_name=self.model_name,
+            training_date=_now_iso(),
+            datasets=self.datasets,
+        )
+        return card.export(output_path)

mdmp_protocol-0.1.0/src/mdmp_core/__init__.py

@@ -0,0 +1,48 @@
+from .contracts import DataContract, load_contract, parse_contract, save_contract
+from .runner import (
+    MDMP_PROTOCOL_VERSION,
+    MDMP_GRADE_ORDER,
+    ContractRunner,
+    ValidationResult,
+    dataframe_fingerprint,
+    grade_meets_minimum,
+)
+from .fingerprint import compute_fingerprint, check_fingerprint
+from .fingerprint_store import FingerprintStore
+from .registry import (
+    REGISTRY_VERSION,
+    init_registry,
+    load_registry,
+    save_registry,
+    upsert_record,
+    lookup_record,
+    list_records,
+)
+from .hf import build_hf_mdmp_section, load_report
+from .visualizer import build_dashboard_html
+
+__all__ = [
+    "DataContract",
+    "load_contract",
+    "parse_contract",
+    "save_contract",
+    "MDMP_PROTOCOL_VERSION",
+    "MDMP_GRADE_ORDER",
+    "ContractRunner",
+    "ValidationResult",
+    "dataframe_fingerprint",
+    "grade_meets_minimum",
+    "compute_fingerprint",
+    "check_fingerprint",
+    "FingerprintStore",
+    "REGISTRY_VERSION",
+    "init_registry",
+    "load_registry",
+    "save_registry",
+    "upsert_record",
+    "lookup_record",
+    "list_records",
+    "build_hf_mdmp_section",
+    "load_report",
+    "build_dashboard_html",
+]