mcp-code-indexer 3.5.5__tar.gz → 3.6.0__tar.gz

{mcp_code_indexer-3.5.5 → mcp_code_indexer-3.6.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: mcp-code-indexer
-Version: 3.5.5
+Version: 3.6.0
 Summary: MCP server that tracks file descriptions across codebases, enabling AI agents to efficiently navigate and understand code through searchable summaries and token-aware overviews.
 License: MIT
 Keywords: mcp,model-context-protocol,code-indexer,ai-tools,codebase-navigation,file-descriptions,llm-tools
@@ -26,13 +26,16 @@ Classifier: Typing :: Typed
 Requires-Dist: aiofiles (==23.2.0)
 Requires-Dist: aiohttp (>=3.8.0)
 Requires-Dist: aiosqlite (==0.19.0)
+Requires-Dist: fastapi (>=0.104.0)
 Requires-Dist: gitignore-parser (==0.1.11)
 Requires-Dist: importlib-metadata (>=1.0.0) ; python_version < "3.8"
 Requires-Dist: mcp (>=1.9.0)
 Requires-Dist: pydantic (>=2.8.0)
+Requires-Dist: python-multipart (>=0.0.6)
 Requires-Dist: tenacity (>=8.0.0)
 Requires-Dist: tiktoken (>=0.9.0)
 Requires-Dist: tomli (>=1.2.0) ; python_version < "3.11"
+Requires-Dist: uvicorn (>=0.24.0)
 Project-URL: Documentation, https://github.com/fluffypony/mcp-code-indexer/blob/main/README.md
 Project-URL: Homepage, https://github.com/fluffypony/mcp-code-indexer
 Project-URL: Repository, https://github.com/fluffypony/mcp-code-indexer
@@ -40,8 +43,8 @@ Description-Content-Type: text/markdown
 
 # MCP Code Indexer 🚀
 
-[![PyPI version](https://badge.fury.io/py/mcp-code-indexer.svg?40)](https://badge.fury.io/py/mcp-code-indexer)
-[![Python](https://img.shields.io/pypi/pyversions/mcp-code-indexer.svg?40)](https://pypi.org/project/mcp-code-indexer/)
+[![PyPI version](https://badge.fury.io/py/mcp-code-indexer.svg?42)](https://badge.fury.io/py/mcp-code-indexer)
+[![Python](https://img.shields.io/pypi/pyversions/mcp-code-indexer.svg?42)](https://pypi.org/project/mcp-code-indexer/)
 [![License](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)
 
 A production-ready **Model Context Protocol (MCP) server** that revolutionizes how AI agents navigate and understand codebases. Built for high-concurrency environments with advanced database resilience, the server provides instant access to intelligent descriptions, semantic search, and context-aware recommendations while maintaining 800+ writes/sec throughput.
@@ -211,29 +214,39 @@ mypy src/
 
 ## 🛠️ MCP Tools Available
 
-The server provides **12 powerful MCP tools** for intelligent codebase management. Whether you're an AI agent or human developer, these tools make navigating code effortless.
-
-### 🎯 For Everyone: Start Here
-- **`check_codebase_size`** - Get instant recommendations for how to navigate your codebase
-- **`search_descriptions`** - Find files by what they do, not just their names
-- **`get_codebase_overview`** - Get a high-level understanding of any project
-
-### 👨‍💻 For Developers: Core Operations
-- **`get_file_description`** - Retrieve stored file descriptions instantly
-- **`update_file_description`** - Store detailed file summaries and metadata  
-- **`find_missing_descriptions`** - Scan projects for files without descriptions
-- **`update_missing_descriptions`** - Bulk update multiple file descriptions
-
-### 🔍 For Advanced Users: Search & Discovery
-- **`get_all_descriptions`** - Complete hierarchical project structure
-- **`get_word_frequency`** - Technical vocabulary analysis with stop-word filtering
-- **`update_codebase_overview`** - Create comprehensive codebase documentation
-
-### 🏥 For System Monitoring: Health & Performance
-- **`check_database_health`** - Real-time database health monitoring and diagnostics
+The server provides **11 powerful MCP tools** for intelligent codebase management. Whether you're an AI agent or human developer, these tools make navigating code effortless.
+
+### 🎯 Essential Tools (Start Here)
+| Tool | Purpose | When to Use |
+|------|---------|-------------|
+| **`check_codebase_size`** | Get navigation recommendations | First tool to call for any project |
+| **`search_descriptions`** | Find files by functionality | When you need specific files |
+| **`get_codebase_overview`** | Project architectural summary | Understanding system design |
+
+### 🔧 Core Operations
+| Tool | Purpose | Best For |
+|------|---------|----------|
+| **`get_file_description`** | Retrieve file summaries | Quick file understanding |
+| **`update_file_description`** | Store detailed file analysis | AI agents updating descriptions |
+| **`find_missing_descriptions`** | Scan for undocumented files | Maintenance and coverage |
+
+### 🔍 Advanced Features
+| Tool | Purpose | Use Case |
+|------|---------|----------|
+| **`get_all_descriptions`** | Complete project structure | Small-to-medium codebases |
+| **`get_word_frequency`** | Technical vocabulary analysis | Domain understanding |
+| **`update_codebase_overview`** | Create project documentation | Architecture documentation |
+| **`search_codebase_overview`** | Search in project overviews | Finding specific topics |
+
+### 🏥 System Health
+| Tool | Purpose | For |
+|------|---------|-----|
+| **`check_database_health`** | Real-time performance monitoring | Production deployments |
 
 💡 **Pro Tip**: Always start with `check_codebase_size` to get personalized recommendations for navigating your specific codebase.
 
+**📖 Complete API Documentation**: [View all 11 tools with examples →](docs/api-reference.md)
+
 ## 🔗 Git Hook Integration
 
 Keep your codebase documentation automatically synchronized with automated analysis on every commit:
@@ -290,21 +303,38 @@ See the **[Git Hook Setup Guide](docs/git-hook-setup.md)** for complete installa
 
 ## 📖 Documentation
 
-### 👤 For Users
-- **[Git Hook Setup Guide](docs/git-hook-setup.md)** - Automated code indexing setup
-- **[Configuration Guide](docs/configuration.md)** - Production deployment and tuning
-
-### 👨‍💻 For Developers  
-- **[API Reference](docs/api-reference.md)** - Complete MCP tool documentation with examples
-- **[Architecture Overview](docs/architecture.md)** - Technical deep dive into system design
-- **[Database Resilience Guide](docs/database-resilience.md)** - Advanced database optimization and monitoring
-
-### 🔧 For System Administrators
-- **[Performance Tuning Guide](docs/performance-tuning.md)** - High-concurrency deployment optimization
-- **[Monitoring & Diagnostics](docs/monitoring.md)** - Production monitoring setup and troubleshooting
-
-### 🤝 For Contributors
-- **[Contributing Guide](docs/contributing.md)** - Development setup and workflow guidelines
+Comprehensive documentation organized by user journey and expertise level.
+
+### 🚀 Getting Started (New Users)
+| Guide | Purpose | Time Investment |
+|-------|---------|-----------------|
+| **[Quick Start](#-quick-start)** | Install and run your first server | 2 minutes |
+| **[Git Hook Setup](docs/git-hook-setup.md)** | Automate your workflow | 5 minutes |
+| **[API Reference](docs/api-reference.md)** | Master all 11 MCP tools | 15 minutes |
+
+### 🏗️ Production Deployment (Teams & Admins)
+| Guide | Focus | Best For |
+|-------|-------|----------|
+| **[Configuration Guide](docs/configuration.md)** | Production setup & tuning | System administrators |
+| **[Performance Tuning](docs/performance-tuning.md)** | High-concurrency optimization | DevOps teams |
+| **[Monitoring & Diagnostics](docs/monitoring.md)** | Production monitoring | Operations teams |
+
+### 🔧 Advanced Topics (Power Users)
+| Guide | Depth | For |
+|-------|-------|-----|
+| **[Architecture Overview](docs/architecture.md)** | System design deep dive | Developers & architects |
+| **[Database Resilience](docs/database-resilience.md)** | Advanced error handling | Senior developers |
+| **[Contributing Guide](docs/contributing.md)** | Development workflow | Contributors |
+
+### 📋 Quick References
+- **[Examples & Integrations](examples/)** - Ready-to-use configurations
+- **[Troubleshooting](#🚨-troubleshooting)** - Common issues & solutions  
+- **[API Tools Summary](#🛠️-mcp-tools-available)** - All 11 tools at a glance
+
+**📚 Reading Paths:**
+- **New to MCP Code Indexer?** Quick Start → Git Hooks → API Reference
+- **Setting up for a team?** Configuration → Performance → Monitoring  
+- **Contributing to the project?** Architecture → Contributing → API Reference
 
 ## 🚦 System Requirements
 
@@ -508,22 +538,45 @@ mcp-code-indexer --dumpdescriptions PROJECT_ID
 - **Error sanitization** to prevent information leakage
 - **Async resource cleanup** to prevent memory leaks
 
+## 🚨 Quick Troubleshooting
+
+**Common issues and instant solutions:**
+
+| Issue | Quick Fix | Learn More |
+|-------|-----------|------------|
+| **"No module named 'mcp_code_indexer'"** | `pip install -e .` (for development) | [Contributing Guide](docs/contributing.md#development-setup) |
+| **"OPENROUTER_API_KEY not found"** | `export OPENROUTER_API_KEY="your-key"` | [Git Hook Setup](docs/git-hook-setup.md#prerequisites) |
+| **"Database is locked"** | Enable WAL mode: `--enable-wal-mode` | [Performance Tuning](docs/performance-tuning.md#database-configuration) |
+| **"Large codebase - use search"** | Normal for 200+ files. Use `search_descriptions` | [API Reference](docs/api-reference.md#search_descriptions) |
+| **High memory usage** | Reduce token limit: `--token-limit 10000` | [Configuration Guide](docs/configuration.md#performance-tuning) |
+
+**💡 Not finding your issue?** Check the [complete troubleshooting guides](docs/monitoring.md#troubleshooting-runbook) in our documentation.
+
 ## 🚀 Next Steps
 
 Ready to supercharge your AI agents with intelligent codebase navigation?
 
-### 👤 Getting Started
-1. **[Install and run your first server](#-quick-start)** - Get up and running in 2 minutes
-2. **[Set up git hooks](docs/git-hook-setup.md)** - Automate your workflow
-3. **[Configure for production](docs/configuration.md)** - Deploy for your team
-
-### 👨‍💻 For Developers
-4. **[Explore the API tools](docs/api-reference.md)** - Master all 11 MCP tools
-5. **[Understand the architecture](docs/architecture.md)** - Deep dive into the technical design
+### 🎯 Choose Your Path
 
-### 🤝 Join the Community
-6. **[Contribute to the project](docs/contributing.md)** - Help make it even better
-7. **[Report issues on GitHub](https://github.com/fluffypony/mcp-code-indexer/issues)** - Share feedback and suggestions
+**🆕 New to MCP Code Indexer?**
+1. **[Install and run your first server](#-quick-start)** - Get up and running in 2 minutes
+2. **[Set up git hooks](docs/git-hook-setup.md)** - Automate your workflow  
+3. **[Master the API tools](docs/api-reference.md)** - Learn all 11 tools with examples
+
+**👥 Setting up for a team?**
+1. **[Configure for production](docs/configuration.md)** - Production deployment guide
+2. **[Performance optimization](docs/performance-tuning.md)** - High-concurrency setup
+3. **[Monitoring & alerts](docs/monitoring.md)** - Production monitoring
+
+**🔧 Want to contribute?**
+1. **[Understand the architecture](docs/architecture.md)** - Technical deep dive
+2. **[Development setup](docs/contributing.md)** - Contribution workflow
+3. **[Report issues](https://github.com/fluffypony/mcp-code-indexer/issues)** - Share feedback and suggestions
+
+**📚 Learning Resources:**
+- **[Examples & integrations](examples/)** - Ready-to-use configurations
+- **[Video tutorials](#)** - Coming soon!
+- **[Community discussions](https://github.com/fluffypony/mcp-code-indexer/discussions)** - Ask questions and share tips
 
 ## 🤝 Contributing
 

{mcp_code_indexer-3.5.5 → mcp_code_indexer-3.6.0}/README.md

@@ -1,7 +1,7 @@
 # MCP Code Indexer 🚀
 
-[![PyPI version](https://badge.fury.io/py/mcp-code-indexer.svg?40)](https://badge.fury.io/py/mcp-code-indexer)
-[![Python](https://img.shields.io/pypi/pyversions/mcp-code-indexer.svg?40)](https://pypi.org/project/mcp-code-indexer/)
+[![PyPI version](https://badge.fury.io/py/mcp-code-indexer.svg?42)](https://badge.fury.io/py/mcp-code-indexer)
+[![Python](https://img.shields.io/pypi/pyversions/mcp-code-indexer.svg?42)](https://pypi.org/project/mcp-code-indexer/)
 [![License](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)
 
 A production-ready **Model Context Protocol (MCP) server** that revolutionizes how AI agents navigate and understand codebases. Built for high-concurrency environments with advanced database resilience, the server provides instant access to intelligent descriptions, semantic search, and context-aware recommendations while maintaining 800+ writes/sec throughput.
@@ -171,29 +171,39 @@ mypy src/
 
 ## 🛠️ MCP Tools Available
 
-The server provides **12 powerful MCP tools** for intelligent codebase management. Whether you're an AI agent or human developer, these tools make navigating code effortless.
-
-### 🎯 For Everyone: Start Here
-- **`check_codebase_size`** - Get instant recommendations for how to navigate your codebase
-- **`search_descriptions`** - Find files by what they do, not just their names
-- **`get_codebase_overview`** - Get a high-level understanding of any project
-
-### 👨‍💻 For Developers: Core Operations
-- **`get_file_description`** - Retrieve stored file descriptions instantly
-- **`update_file_description`** - Store detailed file summaries and metadata  
-- **`find_missing_descriptions`** - Scan projects for files without descriptions
-- **`update_missing_descriptions`** - Bulk update multiple file descriptions
-
-### 🔍 For Advanced Users: Search & Discovery
-- **`get_all_descriptions`** - Complete hierarchical project structure
-- **`get_word_frequency`** - Technical vocabulary analysis with stop-word filtering
-- **`update_codebase_overview`** - Create comprehensive codebase documentation
-
-### 🏥 For System Monitoring: Health & Performance
-- **`check_database_health`** - Real-time database health monitoring and diagnostics
+The server provides **11 powerful MCP tools** for intelligent codebase management. Whether you're an AI agent or human developer, these tools make navigating code effortless.
+
+### 🎯 Essential Tools (Start Here)
+| Tool | Purpose | When to Use |
+|------|---------|-------------|
+| **`check_codebase_size`** | Get navigation recommendations | First tool to call for any project |
+| **`search_descriptions`** | Find files by functionality | When you need specific files |
+| **`get_codebase_overview`** | Project architectural summary | Understanding system design |
+
+### 🔧 Core Operations
+| Tool | Purpose | Best For |
+|------|---------|----------|
+| **`get_file_description`** | Retrieve file summaries | Quick file understanding |
+| **`update_file_description`** | Store detailed file analysis | AI agents updating descriptions |
+| **`find_missing_descriptions`** | Scan for undocumented files | Maintenance and coverage |
+
+### 🔍 Advanced Features
+| Tool | Purpose | Use Case |
+|------|---------|----------|
+| **`get_all_descriptions`** | Complete project structure | Small-to-medium codebases |
+| **`get_word_frequency`** | Technical vocabulary analysis | Domain understanding |
+| **`update_codebase_overview`** | Create project documentation | Architecture documentation |
+| **`search_codebase_overview`** | Search in project overviews | Finding specific topics |
+
+### 🏥 System Health
+| Tool | Purpose | For |
+|------|---------|-----|
+| **`check_database_health`** | Real-time performance monitoring | Production deployments |
 
 💡 **Pro Tip**: Always start with `check_codebase_size` to get personalized recommendations for navigating your specific codebase.
 
+**📖 Complete API Documentation**: [View all 11 tools with examples →](docs/api-reference.md)
+
 ## 🔗 Git Hook Integration
 
 Keep your codebase documentation automatically synchronized with automated analysis on every commit:
@@ -250,21 +260,38 @@ See the **[Git Hook Setup Guide](docs/git-hook-setup.md)** for complete installa
 
 ## 📖 Documentation
 
-### 👤 For Users
-- **[Git Hook Setup Guide](docs/git-hook-setup.md)** - Automated code indexing setup
-- **[Configuration Guide](docs/configuration.md)** - Production deployment and tuning
-
-### 👨‍💻 For Developers  
-- **[API Reference](docs/api-reference.md)** - Complete MCP tool documentation with examples
-- **[Architecture Overview](docs/architecture.md)** - Technical deep dive into system design
-- **[Database Resilience Guide](docs/database-resilience.md)** - Advanced database optimization and monitoring
-
-### 🔧 For System Administrators
-- **[Performance Tuning Guide](docs/performance-tuning.md)** - High-concurrency deployment optimization
-- **[Monitoring & Diagnostics](docs/monitoring.md)** - Production monitoring setup and troubleshooting
-
-### 🤝 For Contributors
-- **[Contributing Guide](docs/contributing.md)** - Development setup and workflow guidelines
+Comprehensive documentation organized by user journey and expertise level.
+
+### 🚀 Getting Started (New Users)
+| Guide | Purpose | Time Investment |
+|-------|---------|-----------------|
+| **[Quick Start](#-quick-start)** | Install and run your first server | 2 minutes |
+| **[Git Hook Setup](docs/git-hook-setup.md)** | Automate your workflow | 5 minutes |
+| **[API Reference](docs/api-reference.md)** | Master all 11 MCP tools | 15 minutes |
+
+### 🏗️ Production Deployment (Teams & Admins)
+| Guide | Focus | Best For |
+|-------|-------|----------|
+| **[Configuration Guide](docs/configuration.md)** | Production setup & tuning | System administrators |
+| **[Performance Tuning](docs/performance-tuning.md)** | High-concurrency optimization | DevOps teams |
+| **[Monitoring & Diagnostics](docs/monitoring.md)** | Production monitoring | Operations teams |
+
+### 🔧 Advanced Topics (Power Users)
+| Guide | Depth | For |
+|-------|-------|-----|
+| **[Architecture Overview](docs/architecture.md)** | System design deep dive | Developers & architects |
+| **[Database Resilience](docs/database-resilience.md)** | Advanced error handling | Senior developers |
+| **[Contributing Guide](docs/contributing.md)** | Development workflow | Contributors |
+
+### 📋 Quick References
+- **[Examples & Integrations](examples/)** - Ready-to-use configurations
+- **[Troubleshooting](#🚨-troubleshooting)** - Common issues & solutions  
+- **[API Tools Summary](#🛠️-mcp-tools-available)** - All 11 tools at a glance
+
+**📚 Reading Paths:**
+- **New to MCP Code Indexer?** Quick Start → Git Hooks → API Reference
+- **Setting up for a team?** Configuration → Performance → Monitoring  
+- **Contributing to the project?** Architecture → Contributing → API Reference
 
 ## 🚦 System Requirements
 
@@ -468,22 +495,45 @@ mcp-code-indexer --dumpdescriptions PROJECT_ID
 - **Error sanitization** to prevent information leakage
 - **Async resource cleanup** to prevent memory leaks
 
+## 🚨 Quick Troubleshooting
+
+**Common issues and instant solutions:**
+
+| Issue | Quick Fix | Learn More |
+|-------|-----------|------------|
+| **"No module named 'mcp_code_indexer'"** | `pip install -e .` (for development) | [Contributing Guide](docs/contributing.md#development-setup) |
+| **"OPENROUTER_API_KEY not found"** | `export OPENROUTER_API_KEY="your-key"` | [Git Hook Setup](docs/git-hook-setup.md#prerequisites) |
+| **"Database is locked"** | Enable WAL mode: `--enable-wal-mode` | [Performance Tuning](docs/performance-tuning.md#database-configuration) |
+| **"Large codebase - use search"** | Normal for 200+ files. Use `search_descriptions` | [API Reference](docs/api-reference.md#search_descriptions) |
+| **High memory usage** | Reduce token limit: `--token-limit 10000` | [Configuration Guide](docs/configuration.md#performance-tuning) |
+
+**💡 Not finding your issue?** Check the [complete troubleshooting guides](docs/monitoring.md#troubleshooting-runbook) in our documentation.
+
 ## 🚀 Next Steps
 
 Ready to supercharge your AI agents with intelligent codebase navigation?
 
-### 👤 Getting Started
-1. **[Install and run your first server](#-quick-start)** - Get up and running in 2 minutes
-2. **[Set up git hooks](docs/git-hook-setup.md)** - Automate your workflow
-3. **[Configure for production](docs/configuration.md)** - Deploy for your team
-
-### 👨‍💻 For Developers
-4. **[Explore the API tools](docs/api-reference.md)** - Master all 11 MCP tools
-5. **[Understand the architecture](docs/architecture.md)** - Deep dive into the technical design
+### 🎯 Choose Your Path
 
-### 🤝 Join the Community
-6. **[Contribute to the project](docs/contributing.md)** - Help make it even better
-7. **[Report issues on GitHub](https://github.com/fluffypony/mcp-code-indexer/issues)** - Share feedback and suggestions
+**🆕 New to MCP Code Indexer?**
+1. **[Install and run your first server](#-quick-start)** - Get up and running in 2 minutes
+2. **[Set up git hooks](docs/git-hook-setup.md)** - Automate your workflow  
+3. **[Master the API tools](docs/api-reference.md)** - Learn all 11 tools with examples
+
+**👥 Setting up for a team?**
+1. **[Configure for production](docs/configuration.md)** - Production deployment guide
+2. **[Performance optimization](docs/performance-tuning.md)** - High-concurrency setup
+3. **[Monitoring & alerts](docs/monitoring.md)** - Production monitoring
+
+**🔧 Want to contribute?**
+1. **[Understand the architecture](docs/architecture.md)** - Technical deep dive
+2. **[Development setup](docs/contributing.md)** - Contribution workflow
+3. **[Report issues](https://github.com/fluffypony/mcp-code-indexer/issues)** - Share feedback and suggestions
+
+**📚 Learning Resources:**
+- **[Examples & integrations](examples/)** - Ready-to-use configurations
+- **[Video tutorials](#)** - Coming soon!
+- **[Community discussions](https://github.com/fluffypony/mcp-code-indexer/discussions)** - Ask questions and share tips
 
 ## 🤝 Contributing
 

{mcp_code_indexer-3.5.5 → mcp_code_indexer-3.6.0}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "mcp-code-indexer"
-version = "3.5.5"
+version = "3.6.0"
 description = "MCP server that tracks file descriptions across codebases, enabling AI agents to efficiently navigate and understand code through searchable summaries and token-aware overviews."
 authors = ["MCP Code Indexer Contributors"]
 maintainers = ["MCP Code Indexer Contributors"]
@@ -54,6 +54,10 @@ aiohttp = ">=3.8.0"
 tenacity = ">=8.0.0"
 tomli = {version = ">=1.2.0", markers = "python_version < '3.11'"}
 importlib-metadata = {version = ">=1.0.0", markers = "python_version < '3.8'"}
+# HTTP transport dependencies
+fastapi = ">=0.104.0"
+uvicorn = ">=0.24.0"
+python-multipart = ">=0.0.6"
 
 [tool.poetry.group.dev.dependencies]
 pytest = ">=8.0.0"

{mcp_code_indexer-3.5.5 → mcp_code_indexer-3.6.0}/src/mcp_code_indexer/main.py

@@ -116,6 +116,41 @@ def parse_arguments() -> argparse.Namespace:
         help="Create local database in specified folder and migrate project data from global DB",
     )
 
+    # HTTP transport options
+    parser.add_argument(
+        "--http",
+        action="store_true",
+        help="Enable HTTP transport instead of stdio (requires 'http' extras)",
+    )
+    
+    parser.add_argument(
+        "--host",
+        type=str,
+        default="127.0.0.1",
+        help="Host to bind HTTP server to (default: 127.0.0.1)",
+    )
+    
+    parser.add_argument(
+        "--port",
+        type=int,
+        default=7557,
+        help="Port to bind HTTP server to (default: 7557)",
+    )
+    
+    parser.add_argument(
+        "--auth-token",
+        type=str,
+        help="Bearer token for HTTP authentication (optional)",
+    )
+    
+    parser.add_argument(
+        "--cors-origins",
+        type=str,
+        nargs="*",
+        default=["*"],
+        help="Allowed CORS origins for HTTP transport (default: allow all)",
+    )
+
     return parser.parse_args()
 
 
@@ -961,10 +996,40 @@ async def main() -> None:
     try:
         # Import and run the MCP server
         from .server.mcp_server import MCPCodeIndexServer
+        
+        # Create transport based on arguments
+        transport = None
+        if args.http:
+            from .transport.http_transport import HTTPTransport
+            transport = HTTPTransport(
+                server_instance=None,  # Will be set after server creation
+                host=args.host,
+                port=args.port,
+                auth_token=args.auth_token,
+                cors_origins=args.cors_origins,
+            )
+            logger.info(
+                "HTTP transport configured",
+                extra={
+                    "structured_data": {
+                        "host": args.host,
+                        "port": args.port,
+                        "auth_enabled": transport.auth_token is not None,
+                        "cors_origins": args.cors_origins,
+                    }
+                },
+            )
 
         server = MCPCodeIndexServer(
-            token_limit=args.token_limit, db_path=db_path, cache_dir=cache_dir
+            token_limit=args.token_limit,
+            db_path=db_path,
+            cache_dir=cache_dir,
+            transport=transport,
         )
+        
+        # Set server instance in transport after server creation
+        if transport:
+            transport.server = server
 
         await server.run()
 

mcp_code_indexer-3.6.0/src/mcp_code_indexer/middleware/__init__.py

@@ -0,0 +1,12 @@
+"""
+Middleware components for MCP Code Indexer.
+
+This module provides middleware for HTTP transport features like
+logging, authentication, and security.
+"""
+
+from .logging import HTTPLoggingMiddleware
+from .auth import HTTPAuthMiddleware
+from .security import HTTPSecurityMiddleware
+
+__all__ = ["HTTPLoggingMiddleware", "HTTPAuthMiddleware", "HTTPSecurityMiddleware"]