mcDETECT 2.0.8__tar.gz → 2.0.9__tar.gz

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Files changed (15) hide show
  1. {mcdetect-2.0.8 → mcdetect-2.0.9}/PKG-INFO +1 -1
  2. mcdetect-2.0.9/mcDETECT/__init__.py +6 -0
  3. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT/model.py +4 -4
  4. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/PKG-INFO +1 -1
  5. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/SOURCES.txt +1 -1
  6. {mcdetect-2.0.8 → mcdetect-2.0.9}/setup.py +1 -1
  7. mcdetect-2.0.8/mcDETECT/__init__.py +0 -6
  8. {mcdetect-2.0.8 → mcdetect-2.0.9}/LICENSE +0 -0
  9. {mcdetect-2.0.8 → mcdetect-2.0.9}/README.md +0 -0
  10. /mcdetect-2.0.8/mcDETECT/model_new_but_wrong.py → /mcdetect-2.0.9/mcDETECT/model_new_incorrect.py +0 -0
  11. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT/utils.py +0 -0
  12. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/dependency_links.txt +0 -0
  13. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/requires.txt +0 -0
  14. {mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/top_level.txt +0 -0
  15. {mcdetect-2.0.8 → mcdetect-2.0.9}/setup.cfg +0 -0
{mcdetect-2.0.8 → mcdetect-2.0.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mcDETECT
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- Version: 2.0.8
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+ Version: 2.0.9
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  Summary: Uncovering the dark transcriptome in polarized neuronal compartments with mcDETECT
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  Home-page: https://github.com/chen-yang-yuan/mcDETECT
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  Author: Chenyang Yuan
mcdetect-2.0.9/mcDETECT/__init__.py ADDED
@@ -0,0 +1,6 @@
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+ __version__ = "2.0.9"
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+
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+ from . import model
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+ from . import utils
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+
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+ __all__ = ["model", "utils"]
{mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT/model.py RENAMED
@@ -290,10 +290,10 @@ class mcDETECT:
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  # [MAIN] dataframe, granule metadata
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- def detect(self):
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-
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- _, data_low, data_high = self.dbscan()
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-
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+ def detect(self, record_cell_id = False):
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+
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+ _, data_low, data_high = self.dbscan(record_cell_id = record_cell_id)
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+
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  print("Merging spheres...")
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  sphere_low, sphere_high = self.merge_sphere(data_low), self.merge_sphere(data_high)
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{mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: mcDETECT
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- Version: 2.0.8
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+ Version: 2.0.9
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  Summary: Uncovering the dark transcriptome in polarized neuronal compartments with mcDETECT
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  Home-page: https://github.com/chen-yang-yuan/mcDETECT
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  Author: Chenyang Yuan
{mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT.egg-info/SOURCES.txt RENAMED
@@ -3,7 +3,7 @@ README.md
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  setup.py
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  mcDETECT/__init__.py
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  mcDETECT/model.py
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- mcDETECT/model_new_but_wrong.py
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+ mcDETECT/model_new_incorrect.py
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  mcDETECT/utils.py
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  mcDETECT.egg-info/PKG-INFO
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  mcDETECT.egg-info/SOURCES.txt
{mcdetect-2.0.8 → mcdetect-2.0.9}/setup.py RENAMED
@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
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  setup(
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  name = "mcDETECT",
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- version = "2.0.8",
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+ version = "2.0.9",
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  packages = find_packages(),
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  install_requires = ["anndata", "miniball", "numpy", "pandas", "rtree", "scanpy", "scikit-learn", "scipy", "shapely"],
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  author = "Chenyang Yuan",
mcdetect-2.0.8/mcDETECT/__init__.py DELETED
@@ -1,6 +0,0 @@
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- __version__ = "2.0.8"
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-
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- from . import model
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- from . import utils
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-
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- __all__ = ["model", "utils"]
{mcdetect-2.0.8 → mcdetect-2.0.9}/LICENSE RENAMED
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{mcdetect-2.0.8 → mcdetect-2.0.9}/README.md RENAMED
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{mcdetect-2.0.8 → mcdetect-2.0.9}/mcDETECT/utils.py RENAMED
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{mcdetect-2.0.8 → mcdetect-2.0.9}/setup.cfg RENAMED
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