mcDETECT 1.0.5__tar.gz → 1.0.7__tar.gz
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- {mcdetect-1.0.5 → mcdetect-1.0.7}/PKG-INFO +1 -1
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT/model.py +2 -2
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT.egg-info/PKG-INFO +1 -1
- {mcdetect-1.0.5 → mcdetect-1.0.7}/setup.py +1 -1
- {mcdetect-1.0.5 → mcdetect-1.0.7}/LICENSE +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/README.md +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT/__init__.py +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT.egg-info/SOURCES.txt +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT.egg-info/dependency_links.txt +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT.egg-info/requires.txt +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/mcDETECT.egg-info/top_level.txt +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/pyproject.toml +0 -0
- {mcdetect-1.0.5 → mcdetect-1.0.7}/setup.cfg +0 -0
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.2
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Name: mcDETECT
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Version: 1.0.
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Version: 1.0.7
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Summary: mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics
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Home-page: https://github.com/chen-yang-yuan/mcDETECT
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Author: Chenyang Yuan
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@@ -364,7 +364,7 @@ class mcDETECT:
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x_bins, y_bins = self.construct_grid(grid_len = None)
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# initialize data
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X = np.zeros((len(genes), len(x_bins) * len(y_bins)))
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X = np.zeros((len(genes), (len(x_bins) - 1) * (len(y_bins) - 1)))
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global_x, global_y = [], []
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# coordinates
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# count matrix
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for k_idx, k in enumerate(genes):
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target_gene = transcripts[transcripts['
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target_gene = transcripts[transcripts['target'] == k]
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count_gene, _, _ = np.histogram2d(target_gene['global_x'], target_gene['global_y'], bins = [x_bins, y_bins])
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X[k_idx, :] = count_gene.flatten()
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if k_idx % 50 == 0:
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Metadata-Version: 2.2
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Name: mcDETECT
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Version: 1.0.
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Version: 1.0.7
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Summary: mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics
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Home-page: https://github.com/chen-yang-yuan/mcDETECT
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Author: Chenyang Yuan
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setup(
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name = "mcDETECT",
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version = "1.0.
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version = "1.0.7",
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packages = find_packages(),
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install_requires = ["anndata", "miniball", "numpy", "pandas", "rtree", "scanpy", "scikit-learn", "scipy", "shapely"],
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author = "Chenyang Yuan",
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