mc3 3.1.4__tar.gz → 3.2.0__tar.gz

mc3-3.2.0/.readthedocs.yml

@@ -0,0 +1,19 @@
+version: 2
+
+build:
+    os: "ubuntu-22.04"
+    tools:
+        python: "3.11"
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/conf.py
+
+python:
+  install:
+  - requirements: requirements.txt
+  - requirements: docs/docs_requirements.txt
+  - method: pip
+    path: .
+
+

{mc3-3.1.4 → mc3-3.2.0}/MANIFEST.in

@@ -3,8 +3,10 @@ include MANIFEST.in
 include requirements.txt
 include CONTRIBUTING.md
 include LICENSE
+include Makefile
 include pytest.ini
 include pyproject.toml
+include .travis.yml
 include .readthedocs.yml
 include docs/*.rst
 include docs/conf.py

mc3-3.2.0/Makefile

@@ -0,0 +1,46 @@
+# Makefile - prepared for MC3
+#
+# `make` - Build and compile the MC3 executable and python extension..
+# `make clean` - Remove all compiled (non-source) files that are created.
+
+# If you are interested in the commands being run by this makefile, you may add
+# "VERBOSE=1" to the end of any `make` command, i.e.:
+#      make VERBOSE=1
+# This will display the exact commands being used for building, etc.
+
+# To enforce compilation with Python3 append "PY3=1" to the make command:
+#      make PY3=1
+
+
+LIBDIR = mc3/lib/
+
+# Set verbosity
+#
+Q = @
+O = > /dev/null
+
+ifdef VERBOSE
+	ifeq ("$(origin VERBOSE)", "command line")
+		Q =
+		O =
+	endif
+else
+	MAKEFLAGS += --no-print-directory
+endif
+
+DIRECTIVE = 
+ifdef PY3
+	ifeq ("$(origin PY3)", "command line")
+		DIRECTIVE = 3
+	endif
+endif
+
+all:
+	@echo "Building MC3 package."
+	$(Q) python$(DIRECTIVE) setup.py build $(O)
+	@mv -f build/lib.*/$(LIBDIR)*.so ./$(LIBDIR)
+	@rm -rf build/
+	@echo "Successful compilation."
+	@echo ""
+clean:
+	@rm -rf $(LIBDIR)*.so

{mc3-3.1.4 → mc3-3.2.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: mc3
-Version: 3.1.4
+Version: 3.2.0
 Summary: Multi-core Markov-chain Monte Carlo package
 Author-email: Patricio Cubillos <patricio.cubillos@oeaw.ac.at>
 License: Copyright (c) 2015-2022 Patricio Cubillos and contributors.
@@ -24,10 +24,10 @@ License: Copyright (c) 2015-2022 Patricio Cubillos and contributors.
         THE SOFTWARE.
         
 Project-URL: Homepage, https://github.com/pcubillos/mc3
-Requires-Python: >=3.6
+Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: numpy>=1.19.5
+Requires-Dist: numpy>=1.23.5
 Requires-Dist: scipy>=1.5.4
 Requires-Dist: matplotlib>=3.3.4
 Provides-Extra: test

{mc3-3.1.4 → mc3-3.2.0}/docs/conf.py

@@ -37,6 +37,9 @@ extensions = [
     'sphinx.ext.autodoc',
     'sphinx.ext.mathjax',
     'sphinx.ext.viewcode',
+    'IPython.sphinxext.ipython_console_highlighting',
+    'nbsphinx',
+    "sphinx_copybutton",
 ]
 
 # Add any paths that contain templates here, relative to this directory.
@@ -72,7 +75,7 @@ release = mc3.__version__
 #
 # This is also used if you do content translation via gettext catalogs.
 # Usually you set "language" from the command line for these cases.
-language = None
+language = 'en'
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:

{mc3-3.1.4 → mc3-3.2.0}/docs/get_started.rst

@@ -6,7 +6,7 @@ Getting Started
 System Requirements
 -------------------
 
-``mc3`` is compatible with Python 3.7+, and has been `tested
+``mc3`` is compatible with Python 3.9+, and has been `tested
 <https://github.com/pcubillos/mc3/actions/workflows/python-package.yml>`_ to work on Unix/Linux and OS X machines.
 
 Install

{mc3-3.1.4 → mc3-3.2.0}/docs/index.rst

@@ -40,7 +40,7 @@ mc3: Multi-Core Markov-Chain Monte Carlo
 
 .. note::
 
-    Got  Python3.7+? Simply install as: ``pip install mc3``
+    Got  Python3.9+? Simply install as: ``pip install mc3``
 
 
 Features

{mc3-3.1.4 → mc3-3.2.0}/mc3/version.py

@@ -3,7 +3,7 @@
 
 # mc3 Version:
 MC3_VER = 3  # Major version
-MC3_MIN = 1  # Minor version
-MC3_REV = 4  # Revision
+MC3_MIN = 2  # Minor version
+MC3_REV = 0  # Revision
 
 __version__ = f'{MC3_VER}.{MC3_MIN}.{MC3_REV}'

{mc3-3.1.4 → mc3-3.2.0}/mc3.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: mc3
-Version: 3.1.4
+Version: 3.2.0
 Summary: Multi-core Markov-chain Monte Carlo package
 Author-email: Patricio Cubillos <patricio.cubillos@oeaw.ac.at>
 License: Copyright (c) 2015-2022 Patricio Cubillos and contributors.
@@ -24,10 +24,10 @@ License: Copyright (c) 2015-2022 Patricio Cubillos and contributors.
         THE SOFTWARE.
         
 Project-URL: Homepage, https://github.com/pcubillos/mc3
-Requires-Python: >=3.6
+Requires-Python: >=3.9
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: numpy>=1.19.5
+Requires-Dist: numpy>=1.23.5
 Requires-Dist: scipy>=1.5.4
 Requires-Dist: matplotlib>=3.3.4
 Provides-Extra: test

{mc3-3.1.4 → mc3-3.2.0}/mc3.egg-info/SOURCES.txt

@@ -2,6 +2,7 @@
 CONTRIBUTING.md
 LICENSE
 MANIFEST.in
+Makefile
 README.md
 pyproject.toml
 pytest.ini

{mc3-3.1.4 → mc3-3.2.0}/mc3.egg-info/requires.txt

@@ -1,4 +1,4 @@
-numpy>=1.19.5
+numpy>=1.23.5
 scipy>=1.5.4
 matplotlib>=3.3.4
 

{mc3-3.1.4 → mc3-3.2.0}/pyproject.toml

@@ -1,8 +1,7 @@
 [build-system]
 requires = [
-    'setuptools>=40.8.0',
-    'wheel',
-    'oldest-supported-numpy',
+    'setuptools',
+    'numpy>=2.0.0',
 ]
 build-backend = "setuptools.build_meta"
 
@@ -15,13 +14,13 @@ license = { file = "LICENSE" }
 #https://packaging.python.org/en/latest/guides/single-sourcing-package-version/
 dynamic = ["version"]
 
-requires-python = ">=3.6"
+requires-python = ">=3.9"
 authors = [
   {name = "Patricio Cubillos", email = "patricio.cubillos@oeaw.ac.at"},
 ]
 
 dependencies = [
-    'numpy>=1.19.5',
+    'numpy>=1.23.5',
     'scipy>=1.5.4',
     'matplotlib>=3.3.4',
 ]

{mc3-3.1.4 → mc3-3.2.0}/requirements.txt

@@ -1,4 +1,4 @@
-numpy>=1.19.5
+numpy>=1.23.5
 scipy>=1.5.4
 matplotlib>=3.3.4
 pytest>=6.0

{mc3-3.1.4 → mc3-3.2.0}/setup.py

@@ -17,8 +17,8 @@ cfiles = list(filter(lambda x: re.search('.+[.]c$', x), cfiles))
 cfiles = list(filter(lambda x: not re.search('[.#].+[.]c$', x), cfiles))
 
 inc = [get_include(), incdir]
-eca = ['-O3', '-ffast-math']
-ela = []
+eca = ['-lm', '-O3', '-ffast-math']
+ela = ['-lm']
 
 extensions = [
     Extension(

mc3-3.1.4/.readthedocs.yml

@@ -1,11 +0,0 @@
-version: 2
-
-formats: []
-
-python:
-  version: 3.8
-  install:
-  - requirements: requirements.txt
-  - method: pip
-    path: .
-