matterlab-serial-device 0.0.0__tar.gz

matterlab_serial_device-0.0.0/LICENSE

@@ -0,0 +1,201 @@
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+   Copyright 2023 aspuru-guzik-group / Self-Driving Lab / Devices
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matterlab_serial_device-0.0.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: matterlab_serial_device
+Version: 0.0.0
+Summary: A wrapper for PySerial device interfaces.
+Author: Han Hao, Martin Seifrid
+License: Apache 2.0
+Platform: win
+Platform: osx
+Platform: unix
+Platform: linux
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Requires-Python: >=3.7
+License-File: LICENSE
+Requires-Dist: pyserial
+Provides-Extra: testing
+Requires-Dist: flake8>=4; extra == "testing"
+Requires-Dist: mypy>=0; extra == "testing"
+Requires-Dist: pytest>=7; extra == "testing"
+Requires-Dist: pytest-cov>=3; extra == "testing"
+Requires-Dist: tox>=3; extra == "testing"
+Dynamic: license-file

matterlab_serial_device-0.0.0/README.md

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+# Serial Device Interface
+
+
+
+## Getting started
+
+To make it easy for you to get started with GitLab, here's a list of recommended next steps.
+
+Already a pro? Just edit this README.md and make it your own. Want to make it easy? [Use the template at the bottom](#editing-this-readme)!
+
+## Add your files
+
+- [ ] [Create](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#create-a-file) or [upload](https://docs.gitlab.com/ee/user/project/repository/web_editor.html#upload-a-file) files
+- [ ] [Add files using the command line](https://docs.gitlab.com/ee/gitlab-basics/add-file.html#add-a-file-using-the-command-line) or push an existing Git repository with the following command:
+
+```
+cd existing_repo
+git remote add origin https://gitlab.com/aspuru-guzik-group/self-driving-lab/devices/serial-device-interface.git
+git branch -M main
+git push -uf origin main
+```
+
+## Integrate with your tools
+
+- [ ] [Set up project integrations](https://gitlab.com/aspuru-guzik-group/self-driving-lab/devices/serial-device-interface/-/settings/integrations)
+
+## Collaborate with your team
+
+- [ ] [Invite team members and collaborators](https://docs.gitlab.com/ee/user/project/members/)
+- [ ] [Create a new merge request](https://docs.gitlab.com/ee/user/project/merge_requests/creating_merge_requests.html)
+- [ ] [Automatically close issues from merge requests](https://docs.gitlab.com/ee/user/project/issues/managing_issues.html#closing-issues-automatically)
+- [ ] [Enable merge request approvals](https://docs.gitlab.com/ee/user/project/merge_requests/approvals/)
+- [ ] [Automatically merge when pipeline succeeds](https://docs.gitlab.com/ee/user/project/merge_requests/merge_when_pipeline_succeeds.html)
+
+## Test and Deploy
+
+Use the built-in continuous integration in GitLab.
+
+- [ ] [Get started with GitLab CI/CD](https://docs.gitlab.com/ee/ci/quick_start/index.html)
+- [ ] [Analyze your code for known vulnerabilities with Static Application Security Testing(SAST)](https://docs.gitlab.com/ee/user/application_security/sast/)
+- [ ] [Deploy to Kubernetes, Amazon EC2, or Amazon ECS using Auto Deploy](https://docs.gitlab.com/ee/topics/autodevops/requirements.html)
+- [ ] [Use pull-based deployments for improved Kubernetes management](https://docs.gitlab.com/ee/user/clusters/agent/)
+- [ ] [Set up protected environments](https://docs.gitlab.com/ee/ci/environments/protected_environments.html)
+
+***
+
+# Editing this README
+
+When you're ready to make this README your own, just edit this file and use the handy template below (or feel free to structure it however you want - this is just a starting point!). Thank you to [makeareadme.com](https://www.makeareadme.com/) for this template.
+
+## Suggestions for a good README
+Every project is different, so consider which of these sections apply to yours. The sections used in the template are suggestions for most open source projects. Also keep in mind that while a README can be too long and detailed, too long is better than too short. If you think your README is too long, consider utilizing another form of documentation rather than cutting out information.
+
+## Name
+Choose a self-explaining name for your project.
+
+## Description
+Let people know what your project can do specifically. Provide context and add a link to any reference visitors might be unfamiliar with. A list of Features or a Background subsection can also be added here. If there are alternatives to your project, this is a good place to list differentiating factors.
+
+## Badges
+On some READMEs, you may see small images that convey metadata, such as whether or not all the tests are passing for the project. You can use Shields to add some to your README. Many services also have instructions for adding a badge.
+
+## Visuals
+Depending on what you are making, it can be a good idea to include screenshots or even a video (you'll frequently see GIFs rather than actual videos). Tools like ttygif can help, but check out Asciinema for a more sophisticated method.
+
+## Installation
+Within a particular ecosystem, there may be a common way of installing things, such as using Yarn, NuGet, or Homebrew. However, consider the possibility that whoever is reading your README is a novice and would like more guidance. Listing specific steps helps remove ambiguity and gets people to using your project as quickly as possible. If it only runs in a specific context like a particular programming language version or operating system or has dependencies that have to be installed manually, also add a Requirements subsection.
+
+## Usage
+Use examples liberally, and show the expected output if you can. It's helpful to have inline the smallest example of usage that you can demonstrate, while providing links to more sophisticated examples if they are too long to reasonably include in the README.
+
+## Support
+Tell people where they can go to for help. It can be any combination of an issue tracker, a chat room, an email address, etc.
+
+## Roadmap
+If you have ideas for releases in the future, it is a good idea to list them in the README.
+
+## Contributing
+State if you are open to contributions and what your requirements are for accepting them.
+
+For people who want to make changes to your project, it's helpful to have some documentation on how to get started. Perhaps there is a script that they should run or some environment variables that they need to set. Make these steps explicit. These instructions could also be useful to your future self.
+
+You can also document commands to lint the code or run tests. These steps help to ensure high code quality and reduce the likelihood that the changes inadvertently break something. Having instructions for running tests is especially helpful if it requires external setup, such as starting a Selenium server for testing in a browser.
+
+## Authors and acknowledgment
+Show your appreciation to those who have contributed to the project.
+
+## License
+For open source projects, say how it is licensed.
+
+## Project status
+If you have run out of energy or time for your project, put a note at the top of the README saying that development has slowed down or stopped completely. Someone may choose to fork your project or volunteer to step in as a maintainer or owner, allowing your project to keep going. You can also make an explicit request for maintainers.

matterlab_serial_device-0.0.0/setup.cfg

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+[metadata]
+name = matterlab_serial_device
+version = 0.0.0
+description = A wrapper for PySerial device interfaces.
+author = Han Hao, Martin Seifrid
+license = Apache 2.0
+license_file = LICENSE
+platforms = win, osx, unix, linux
+classifiers = 
+	Programming Language :: Python :: 3
+	Programming Language :: Python :: 3 :: Only
+	Programming Language :: Python :: 3.6
+	Programming Language :: Python :: 3.7
+	Programming Language :: Python :: 3.8
+	Programming Language :: Python :: 3.9
+	Programming Language :: Python :: 3.10
+
+[options]
+packages = 
+	matterlab_serial_device
+install_requires = 
+	pyserial
+python_requires = >=3.7
+package_dir = 
+	=src
+
+[options.extras_require]
+testing = 
+	flake8>=4
+	mypy>=0
+	pytest>=7
+	pytest-cov>=3
+	tox>=3
+
+[options.package_data]
+matterlab_serial_device = py.typed
+
+[flake8]
+max-line-length = 160
+
+[egg_info]
+tag_build = 
+tag_date = 0
+

matterlab_serial_device-0.0.0/setup.py

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+from setuptools import setup
+
+if __name__ == "__main__":
+    setup()

matterlab_serial_device-0.0.0/src/matterlab_serial_device/__init__.py

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+from .serial_device import SerialDevice, SerialDeviceSettings, open_close
+
+__all__ = ["SerialDevice", "SerialDeviceSettings", "open_close"]

matterlab_serial_device-0.0.0/src/matterlab_serial_device/serial_device.py

@@ -0,0 +1,236 @@
+import json
+import time
+from pathlib import Path
+from typing import Dict, Optional, Tuple, Union
+from logging import Logger, getLogger
+
+import serial
+from serial import Serial
+
+SERIAL_PARITY: Dict = {"none":  serial.PARITY_NONE,
+                       "odd":   serial.PARITY_ODD,
+                       "even":  serial.PARITY_EVEN,
+                       "mark":  serial.PARITY_MARK,
+                       "space": serial.PARITY_SPACE
+                       }
+
+SERIAL_BYTESIZE: Dict = {5: serial.FIVEBITS,
+                         6: serial.SIXBITS,
+                         7: serial.SEVENBITS,
+                         8: serial.EIGHTBITS
+                         }
+
+SERIAL_STOPBITS: Dict = {1:   serial.STOPBITS_ONE,
+                         1.5: serial.STOPBITS_ONE_POINT_FIVE,
+                         2:   serial.STOPBITS_TWO
+                         }
+
+SERIAL_FACTORY: Dict = {"parity":   SERIAL_PARITY,
+                        "bytesize": SERIAL_BYTESIZE,
+                        "stopbits": SERIAL_STOPBITS
+                        }
+
+
+def open_close(func):
+    """
+    decorator
+    close communication first in case it is open (otherwise will raise error port is already open)
+    open communication before sending/receiving commands
+    then close in case of failure of communication
+    :param func:
+    :return:
+    """
+
+    def wrapper(self, *args, **kwargs):
+        self.close_device_comm()  # This is done to avoid opening a port that is already open
+        self.open_device_comm()
+        func_return = func(self, *args, **kwargs)
+        self.close_device_comm()
+        return func_return
+
+    return wrapper
+
+
+class SerialDeviceSettings:
+    special_keys: Tuple = ("parity", "bytesize", "stopbits",)
+
+    def __init__(self, default_settings: Path, **kwargs) -> None:
+        """
+        read settings of SerialDevice
+        :param default_settings: path of default settings of this device
+        :param kwargs: device-specific setting, e.g. com_port, address
+        """
+        with default_settings.open("r") as f:
+            self._defaults: Dict = json.load(f)
+
+        settings = {**kwargs}
+
+        if "com_port" not in settings:
+            settings: Dict = self._get_com_port(settings)
+
+        if ("RS485" in settings) and (settings["RS485"] is True) and ("address" not in settings):
+            settings: Dict = self._get_address(settings)
+
+        self._set_attrs({**self._defaults, **settings})
+
+    def _set_attrs(self, attributes: Dict) -> None:
+        """
+        read settings of the device
+        :param attributes:
+        :return:
+        """
+        for key, value in attributes.items():
+            self.__setattr__(key, value)
+
+        for sp_key in self.special_keys:
+            if sp_key in attributes:
+                if attributes[sp_key] not in SERIAL_FACTORY[sp_key]:
+                    raise ValueError(f"Invalid value for {sp_key}: {attributes[sp_key]}")
+                else:
+                    self.__setattr__(sp_key, SERIAL_FACTORY[sp_key][attributes[sp_key]])
+
+    @staticmethod
+    def _get_com_port(settings: Dict) -> Dict:
+        """
+        manual input of the COM port of the device
+        other settings use default
+        :return:
+        """
+        settings["com_port"]: str = input('Enter the appropriate communications port\
+                (e.g., COM1 for windows, or /dev/ttyS0 or /dev/ttySUSB0 for Linux):\n')
+        return settings
+
+    @staticmethod
+    def _get_address(settings: Dict) -> Dict:
+        """
+        manual input of the RS485 port of the device
+        other settings use default
+        :param settings:
+        :return:
+        """
+        address: str = input('Enter the appropriate RS485 address:\n')
+        if not address.isdigit():
+            raise TypeError("Address must be an integer.")
+        if int(address) <= 0 or int(address) > 255:
+            raise ValueError("Address must be between 1 and 255.")
+
+        settings["address"]: int = int(address)
+        return settings
+
+
+class SerialDevice:
+    default_eol: bytes = b"\r\n"
+
+    def __init__(
+            self,
+            default_settings: Path,
+            settings: Dict = None,
+            logger: Optional[Logger] = None,
+    ) -> None:
+        self.settings: SerialDeviceSettings = SerialDeviceSettings(default_settings, settings)
+        self._init_device()
+        self.logger = logger if logger is not None else getLogger()
+        self.logger.debug(f"Created SerialDevice with settings: {self.settings.__dict__}")
+
+    def _init_device(self):
+        """
+        add a device according to the device_setting
+        :return: None
+        """
+        self.device = Serial(port=self.settings.com_port,
+                             baudrate=self.settings.baudrate,
+                             parity=self.settings.parity,
+                             bytesize=self.settings.bytesize,
+                             timeout=self.settings.timeout,
+                             stopbits=self.settings.stopbits,
+                             )
+        self.close_device_comm()
+
+    def open_device_comm(self):
+        """
+        close communication with the device to free the port
+        open communication with the device
+        DO NOT start the device electronically!
+        :return:
+        """
+        self.device.close()
+        self.device.open()
+
+    def close_device_comm(self):
+        """
+        close communication with the device
+        DO NOT shut down the device electronically!
+        :return:
+        """
+        self.device.close()
+
+    @staticmethod
+    def _encode(command: Union[str, bytes, bytearray]) -> bytes:
+        """
+        encode the command to bytes
+        :param command:
+        :return bytes:
+        """
+        if isinstance(command, str):
+            command: bytes = command.encode()
+        elif isinstance(command, bytearray):
+            command: bytes = bytes(command)
+        elif isinstance(command, bytes):
+            pass
+        else:
+            raise TypeError("'command' type must be either  str, bytes, or bytearray.")
+        return command
+
+    def write(self, command: Union[str, bytes, bytearray]) -> None:
+        """
+        write the command in bytes to the device
+        :param command: command to write
+        :return:
+        """
+        command_bytes: bytes = self._encode(command)
+        self.device.write(command_bytes)
+
+    def read(self, return_bytes: bool = False, **kwargs) -> Union[str, bytes]:
+        """
+        read the response from the device until EOL (b'\r\n')
+        :return: decoded string, not including the EOL
+        """
+        response: bytes = self.read_bytes(**kwargs)
+        if return_bytes:
+            return response
+        else:
+            return response.decode(self.settings.encoding)
+
+    def read_bytes(self,
+                   read_until: Optional[Union[str, bytes]] = None,
+                   num_bytes: int = None,
+                   remove_from_start: int = 0,
+                   remove_from_end: Optional[int] = None
+                   ) -> bytes:
+        """
+        read the response from the device until EOL (b'\r\n')
+        num_bytes: max number of bytes
+        :return: decoded string, not including the EOL
+        """
+        read_until: Union[str, bytes] = read_until if read_until else self.default_eol
+        command_bytes: bytes = self._encode(read_until)
+        full_response: bytes = self.device.read_until(expected=command_bytes, size=num_bytes)
+        if not remove_from_end:
+            return full_response[remove_from_start:]
+        else:
+            return full_response[remove_from_start:-remove_from_end]
+            
+    def query(self,
+              write_command: Union[str, bytes, bytearray],
+              read_delay: float = 0.5,
+              **kwargs
+              ) -> str:
+        """
+        Send command to the device, wait for read_delay seconds, then read the response.
+        :param write_command:
+        :param read_delay:
+        :return:
+        """
+        self.write(write_command)
+        time.sleep(read_delay)
+        return self.read(**kwargs)

matterlab_serial_device-0.0.0/src/matterlab_serial_device.egg-info/PKG-INFO

@@ -0,0 +1,27 @@
+Metadata-Version: 2.4
+Name: matterlab_serial_device
+Version: 0.0.0
+Summary: A wrapper for PySerial device interfaces.
+Author: Han Hao, Martin Seifrid
+License: Apache 2.0
+Platform: win
+Platform: osx
+Platform: unix
+Platform: linux
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Requires-Python: >=3.7
+License-File: LICENSE
+Requires-Dist: pyserial
+Provides-Extra: testing
+Requires-Dist: flake8>=4; extra == "testing"
+Requires-Dist: mypy>=0; extra == "testing"
+Requires-Dist: pytest>=7; extra == "testing"
+Requires-Dist: pytest-cov>=3; extra == "testing"
+Requires-Dist: tox>=3; extra == "testing"
+Dynamic: license-file

matterlab_serial_device-0.0.0/src/matterlab_serial_device.egg-info/SOURCES.txt

@@ -0,0 +1,13 @@
+LICENSE
+README.md
+setup.cfg
+setup.py
+src/matterlab_serial_device/__init__.py
+src/matterlab_serial_device/serial_device.py
+src/matterlab_serial_device.egg-info/PKG-INFO
+src/matterlab_serial_device.egg-info/SOURCES.txt
+src/matterlab_serial_device.egg-info/dependency_links.txt
+src/matterlab_serial_device.egg-info/requires.txt
+src/matterlab_serial_device.egg-info/top_level.txt
+tests/test_serial_device.py
+tests/test_serial_device_settings.py

matterlab_serial_device-0.0.0/src/matterlab_serial_device.egg-info/dependency_links.txt

@@ -0,0 +1 @@
+

matterlab_serial_device-0.0.0/src/matterlab_serial_device.egg-info/requires.txt

@@ -0,0 +1,8 @@
+pyserial
+
+[testing]
+flake8>=4
+mypy>=0
+pytest>=7
+pytest-cov>=3
+tox>=3

matterlab_serial_device-0.0.0/src/matterlab_serial_device.egg-info/top_level.txt

@@ -0,0 +1 @@
+matterlab_serial_device

matterlab_serial_device-0.0.0/tests/test_serial_device.py

@@ -0,0 +1,88 @@
+import pytest
+from pathlib import Path
+
+from matterlab_serial_device import SerialDevice
+
+defaults_path = Path(__file__).parent.parent / "data" / "default_settings.json"
+
+
+@pytest.fixture
+def serial_device(mocker):
+    # Create a SerialDevice instance for testing
+    settings = {"com_port": "COM1"}
+    mocker.patch("serial.Serial")
+    return SerialDevice(defaults_path, settings)
+
+
+def test_init_device(serial_device, mocker):
+    mock_serial = mocker.patch("serial.Serial")
+    device = serial_device()
+    mock_serial.assert_called_once_with(
+        port=serial_device.settings.com_port,
+        baudrate=serial_device.settings.baudrate,
+        parity=serial_device.settings.parity,
+        bytesize=serial_device.settings.bytesize,
+        timeout=serial_device.settings.timeout,
+        stopbits=serial_device.settings.stopbits,
+    )
+    mock_serial.return_value.close_device_comm.assert_called_once()
+
+
+def test_open_and_close_device_comm(serial_device, mocker):
+    mock_serial = mocker.patch("serial.Serial")
+    serial_device.open_device_comm()
+    mock_serial.return_value.close.assert_called_once()
+    mock_serial.return_value.open.assert_called_once()
+
+    serial_device.close_device_comm()
+    mock_serial.return_value.close.assert_called_once()
+
+
+def test_encode(serial_device):
+    command_str = "test"
+    command_bytes = b"test"
+    result_str = serial_device._encode(command_str)
+    result_bytes = serial_device._encode(command_bytes)
+
+    assert result_str == command_bytes
+    assert result_bytes == command_bytes
+
+
+def test_write(serial_device, mocker):
+    command = "test command"
+    command_bytes = b"test command"
+    mock_write = mocker.patch.object(serial_device.device, "write")
+    serial_device.write(command)
+
+    mock_write.assert_called_once_with(command_bytes)
+
+
+def test_read(serial_device, mocker):
+    response_bytes = b"test response"
+    mock_read_bytes = mocker.patch.object(serial_device, "read_bytes", return_value=response_bytes)
+    result = serial_device.read()
+
+    assert result == response_bytes.decode(serial_device.settings.encoding)
+    mock_read_bytes.assert_called_once_with()
+
+
+def test_read_bytes(serial_device, mocker):
+    response_bytes = b"test response"
+    mock_read_until = mocker.patch.object(serial_device.device, "read_until", return_value=response_bytes)
+    result = serial_device.read_bytes()
+
+    assert result == response_bytes
+    mock_read_until.assert_called_once_with(expected=serial_device.default_eol, size=None)
+
+
+def test_query(serial_device, mocker):
+    write_command = "test command"
+    read_delay = 0.5
+    response = "test response"
+    mock_write = mocker.patch.object(serial_device, "write")
+    mock_read = mocker.patch.object(serial_device, "read", return_value=response)
+    result = serial_device.query(write_command, read_delay)
+
+    assert result == response
+    mock_write.assert_called_once_with(write_command)
+    mock_read.assert_called_once_with()

matterlab_serial_device-0.0.0/tests/test_serial_device_settings.py

@@ -0,0 +1,34 @@
+import serial
+import pytest
+
+from pathlib import Path
+
+from matterlab_serial_device import SerialDeviceSettings
+
+defaults_path = Path(__file__).parent.parent / "data" / "default_settings.json"
+
+
+def test_device_settings_init():
+    settings = SerialDeviceSettings(defaults_path, {"com_port": "COM1"})
+    assert settings.com_port == "COM1"
+    assert settings.baudrate == 19200
+    assert settings.parity == serial.PARITY_ODD
+    assert settings.bytesize == 7
+    assert settings.timeout == 1
+
+
+def test_get_com_port(monkeypatch):
+    monkeypatch.setattr("builtins.input", lambda _: "COM123")
+    settings = SerialDeviceSettings(defaults_path)
+    assert settings.com_port == "COM123"
+
+
+def test_get_rs485_address(monkeypatch):
+    monkeypatch.setattr("builtins.input", lambda _: "123")
+    settings = SerialDeviceSettings(defaults_path, {"com_port": "COM1", "RS485": True})
+    assert settings.address == 123
+
+    for address, error in zip(["one", "0", "256"], [TypeError, ValueError, ValueError]):
+        with pytest.raises(error):
+            monkeypatch.setattr("builtins.input", lambda _: address)
+            settings = SerialDeviceSettings(defaults_path, {"com_port": "COM1", "RS485": True})