mathjson-solver 1.19.0__tar.gz → 1.20.0__tar.gz

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Files changed (108) hide show
  1. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/PKG-INFO +1 -1
  2. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/docs/README.md +42 -1
  3. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/pyproject.toml +1 -1
  4. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/src/mathjson_solver/__main__.py +10 -3
  5. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_with_pytest.py +17 -1
  6. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  7. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/.github/workflows/python-app.yml +0 -0
  8. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/.github/workflows/test-coverage.yml +0 -0
  9. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/.gitignore +0 -0
  10. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/CODE_OF_CONDUCT.md +0 -0
  11. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/CONTRIBUTING.md +0 -0
  12. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/LICENSE +0 -0
  13. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/README.md +0 -0
  14. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/SECURITY.md +0 -0
  15. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/docs/integration-test-cases.md +0 -0
  16. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/logo.png +0 -0
  17. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/logo.svg +0 -0
  18. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/src/mathjson_solver/__init__.py +0 -0
  19. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_TrapezoidalIntegratel.py +0 -0
  20. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_atindex.py +0 -0
  21. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_cumulative.py +0 -0
  22. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_datetime.py +0 -0
  23. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_equal.py +0 -0
  24. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_exceptions.py +0 -0
  25. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_extract_variables.py +0 -0
  26. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_findinterval.py +0 -0
  27. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_gail_model.py +0 -0
  28. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_interpolate.py +0 -0
  29. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_range.py +0 -0
  30. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_reduce_simple.py +0 -0
  31. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_scalars.py +0 -0
  32. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_sets.py +0 -0
  33. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_simple_cases.py +0 -0
  34. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_slice.py +0 -0
  35. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/tests/test_state_tuples_reduce.py +0 -0
  36. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/NCI_50_CASES_WORKSHEET.md +0 -0
  37. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/NCI_AGE35-39_ANALYSIS.md +0 -0
  38. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/NCI_AGE35-44_ANALYSIS.md +0 -0
  39. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/NCI_COMPARISON_REPORT.md +0 -0
  40. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/NCI_COMPLETE_VALIDATION_ANALYSIS.md +0 -0
  41. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/NCI_VALIDATION_WORKSHEET.md +0 -0
  42. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/R_CODE_VERIFICATION_ANALYSIS.md +0 -0
  43. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/corrected_comparison.txt +0 -0
  44. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/final_comparison.txt +0 -0
  45. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/full_comparison.md +0 -0
  46. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/gail_continuous_model_visualization.html +0 -0
  47. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/gail_continuous_model_visualization.md +0 -0
  48. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/generate_comprehensive_comparison.py +0 -0
  49. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/test_interval_analysis.py +0 -0
  50. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommited2/updated_comparison.txt +0 -0
  51. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/DESCRIPTION +0 -0
  52. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/NAMESPACE +0 -0
  53. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/absolute.risk.R +0 -0
  54. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/check.summary.R +0 -0
  55. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/error.table.R +0 -0
  56. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/error.table.all.R +0 -0
  57. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/list.constants.R +0 -0
  58. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/recode.check.R +0 -0
  59. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/relative.risk.R +0 -0
  60. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/R/risk.summary.R +0 -0
  61. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/data/BrCa_1_AR.rda +0 -0
  62. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/data/BrCa_beta.rda +0 -0
  63. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/data/BrCa_lambda1.rda +0 -0
  64. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/data/BrCa_lambda2.rda +0 -0
  65. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/data/exampledata.rda +0 -0
  66. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/BCRA-package.Rd +0 -0
  67. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/BrCa_1_AR.Rd +0 -0
  68. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/BrCa_beta.Rd +0 -0
  69. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/BrCa_lambda1.Rd +0 -0
  70. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/BrCa_lambda2.Rd +0 -0
  71. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/absolute.risk.Rd +0 -0
  72. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/check.summary.Rd +0 -0
  73. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/error.table.Rd +0 -0
  74. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/error.table.all.Rd +0 -0
  75. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/exampledata.Rd +0 -0
  76. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/list.constants.Rd +0 -0
  77. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/recode.check.Rd +0 -0
  78. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/relative.risk.Rd +0 -0
  79. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/BCRA_2.0/BCRA/man/risk.summary.Rd +0 -0
  80. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/CLEAN_MODEL_USAGE.md +0 -0
  81. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/COSTANTINO1999_RESULTS_TABLE.md +0 -0
  82. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/EXACT_PATIENT_EXAMPLES.md +0 -0
  83. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/FINAL_IMPLEMENTATION_SUMMARY.md +0 -0
  84. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/GAIL_MODEL_IMPLEMENTATION_REPORT.md +0 -0
  85. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/INTEGRATION_MODEL_VALIDATION_COMPARISON.md +0 -0
  86. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/NCI_VALIDATION_STRATEGY.md +0 -0
  87. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/best_so_far/man_test_gail_model_nci_validated_no_beta.py +0 -0
  88. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/best_so_far/man_test_nci_discrete_implementation_no_beta.py +0 -0
  89. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/gail_continuous_model_mathjson.json +0 -0
  90. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/publications/costantino_1999.pdf +0 -0
  91. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/publications/gail_1989.pdf +0 -0
  92. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/generate_exact_patient_examples.py +0 -0
  93. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_bcpt_validation_integration.py +0 -0
  94. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_gail_approximated_model_nci_validated.py +0 -0
  95. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_gail_exact_nci_implementation.py +0 -0
  96. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_gail_exact_with_cumulative.py +0 -0
  97. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_gail_exact_with_reduce.py +0 -0
  98. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_gail_model_costantino_integration.py +0 -0
  99. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_gail_model_nci_validated_fixed.py +0 -0
  100. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_nci_calculator_validation.py +0 -0
  101. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/unsorted_uncommitted/tests/test_patient_examples_comparison.py +0 -0
  102. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/chart.csv +0 -0
  103. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/cvd_risk.json +0 -0
  104. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/image.png +0 -0
  105. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/score2.csv +0 -0
  106. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/score2_mid.csv +0 -0
  107. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/score2_results2.xlsx +0 -0
  108. {mathjson_solver-1.19.0 → mathjson_solver-1.20.0}/untracked/score2_table.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
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  Name: mathjson-solver
3
- Version: 1.19.0
3
+ Version: 1.20.0
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  Summary: Utilities for MathJSON evaluation
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  Project-URL: Homepage, https://github.com/LongenesisLtd/mathjson-solver
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  Project-URL: Bug Tracker, https://github.com/LongenesisLtd/mathjson-solver/issues
@@ -309,6 +309,26 @@ The following example has two constants defined - `x=10` and `y=20`. Then the su
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  ]
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  ```
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311
 
312
+ #### Null propagation
313
+
314
+ If a constant definition raises an exception (e.g. because a referenced parameter is missing), that constant is set to `None` instead of crashing the entire expression. This allows `If` to select the valid branch at runtime:
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+
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+ ```python
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+ # With parameters = {"new_val": 22.5} (old_val is missing)
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+ [
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+ "Constants",
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+ ["c_old", ["Divide", "old_val", 2]], # raises → None
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+ ["c_new", ["Divide", "new_val", 2]], # 11.25
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+ ["If",
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+ [["Greater", "c_new", 0], "c_new"],
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+ "c_old"
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+ ]
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+ ]
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+ # Result: 11.25 (c_old was never needed)
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+ ```
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+
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+ A constant that failed to compute can be detected with `["Equal", "c_old", None]`.
331
+
312
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  ### If Statement
313
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  ```
314
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  [
@@ -779,13 +799,33 @@ Converts a value to a string representation.
779
799
  ```
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800
 
781
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  ### IsDefined
782
- **Note: This is a placeholder function for future implementation.** Supposed to check if a parameter name exists in the parameters dictionary.
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+ Returns `True` if the given name exists as a solver parameter or as a `Constants`-defined constant, `False` otherwise.
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784
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  ```python
785
805
  # With parameters = {"a": 12}
806
+ ["IsDefined", "a"] # True
786
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  ["IsDefined", "b"] # False
808
+
809
+ # Inside Constants
810
+ ["Constants", ["x", 5], ["IsDefined", "x"]] # True
811
+ ["Constants", ["x", 5], ["IsDefined", "y"]] # False
812
+ ```
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+
814
+ ### IsUndefined
815
+ The logical complement of `IsDefined`. Returns `True` if the name is not defined, `False` if it is.
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+
817
+ ```python
818
+ # With parameters = {"a": 12}
819
+ ["IsUndefined", "a"] # False
820
+ ["IsUndefined", "b"] # True
821
+
822
+ # Inside Constants
823
+ ["Constants", ["x", 5], ["IsUndefined", "x"]] # False
824
+ ["Constants", ["x", 5], ["IsUndefined", "y"]] # True
787
825
  ```
788
826
 
827
+ Note: when a `Constants` definition raises an exception, that constant is set to `None` (see null-propagation below). In that case `IsUndefined` still returns `False` — the name is defined, just with a `None` value. Use `["Equal", "val", None]` to test for that explicitly.
828
+
789
829
  ---
790
830
 
791
831
  ## Date and Time Functions
@@ -1166,6 +1206,7 @@ Finds the interval index where a value falls within a sorted array of bounds. Re
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1206
  - [Float](#float) - Convert to float
1167
1207
  - [Str](#str) - Convert to string
1168
1208
  - [IsDefined](#isdefined) - Check if defined
1209
+ - [IsUndefined](#isundefined) - Check if not defined
1169
1210
 
1170
1211
  ### Date and Time Functions
1171
1212
  - [Today](#today) - Current date (ISO string)
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
4
4
 
5
5
  [project]
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  name = "mathjson-solver"
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- version = "1.19.0"
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+ version = "1.20.0"
8
8
  authors = [{name = "Martins Mednis", email = "mrt@mednis.info"}]
9
9
  description = "Utilities for MathJSON evaluation"
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10
  readme = "README.md"
@@ -430,7 +430,10 @@ def create_mathjson_solver(solver_parameters):
430
430
 
431
431
  def Constants(s):
432
432
  for x in s[1:-1]:
433
- c[x[0]] = f(x[1], c)
433
+ try:
434
+ c[x[0]] = f(x[1], c)
435
+ except Exception:
436
+ c[x[0]] = None
434
437
  return f(s[-1], c)
435
438
 
436
439
  def Switch(s):
@@ -652,8 +655,10 @@ def create_mathjson_solver(solver_parameters):
652
655
  # lambda s: f"{f(s[1], c)}" == f"{f(s[2], c)}",
653
656
 
654
657
  def IsDefined(s):
655
- # Todo: This does not work
656
- return s[1] in c.keys()
658
+ return s[1] in solver_parameters or s[1] in c
659
+
660
+ def IsUndefined(s):
661
+ return not IsDefined(s)
657
662
 
658
663
  def Greater(s):
659
664
  v1, v2 = comparison_safe_converter_for_pairs(f(s[1], c), f(s[2], c))
@@ -1101,6 +1106,7 @@ def create_mathjson_solver(solver_parameters):
1101
1106
  "Not": Not,
1102
1107
  # "IsDefined": lambda s: s[1] in c,
1103
1108
  "IsDefined": IsDefined,
1109
+ "IsUndefined": IsUndefined,
1104
1110
  "Map": Map,
1105
1111
  "StrictMap": StrictMap,
1106
1112
  "Filter": Filter,
@@ -1230,6 +1236,7 @@ def extract_variables(s: Union[list, int, float, str], li: set, ignore_list: set
1230
1236
  "Str",
1231
1237
  "Not",
1232
1238
  "IsDefined",
1239
+ "IsUndefined",
1233
1240
  "Map",
1234
1241
  "HasMatchingSublist",
1235
1242
  "Strptime",
@@ -11,8 +11,12 @@ from mathjson_solver import create_solver
11
11
  @pytest.mark.parametrize(
12
12
  "parameters, expression, expected_result",
13
13
  [
14
- # ({"a": 12}, ["IsDefined", "a"], True),
14
+ ({"a": 12}, ["IsDefined", "a"], True),
15
15
  ({"a": 12}, ["IsDefined", "b"], False),
16
+ ({}, ["Constants", ["x", 5], ["IsDefined", "x"]], True),
17
+ ({"a": 12}, ["IsUndefined", "a"], False),
18
+ ({"a": 12}, ["IsUndefined", "b"], True),
19
+ ({}, ["Constants", ["x", 5], ["IsUndefined", "x"]], False),
16
20
  ({}, ["Abs", -3.5], 3.5),
17
21
  ({}, ["Round", -5.123456, 2], -5.12),
18
22
  ({}, ["Round", -5.123456, 0], -5),
@@ -21,6 +25,18 @@ from mathjson_solver import create_solver
21
25
  ({}, ["Constants", ["a", 1], ["b", 2], "a"], 1),
22
26
  ({}, ["Constants", ["a", 1], ["b", 2], ["c", 100], ["Sum", "a", "b"]], 3),
23
27
  ({}, ["Constants", ["a", 1], ["b", ["Add", 2, "a"]], "b"], 3),
28
+ # Constants null-propagation: uncomputable constant becomes None,
29
+ # allowing If to select the computable branch.
30
+ (
31
+ {"x": 10},
32
+ ["Constants", ["good", "x"], ["bad", ["Divide", "missing", 2]], ["If", [["Greater", "good", 0], "good"], "bad"]],
33
+ 10,
34
+ ),
35
+ (
36
+ {"x": 10},
37
+ ["Constants", ["bad", ["Divide", "missing", 2]], ["good", "x"], ["If", [["Greater", "good", 0], "good"], "bad"]],
38
+ 10,
39
+ ),
24
40
  ({"x": 1}, ["Add", 2, "x"], 3),
25
41
  ({"value": 1}, ["Switch", "value", 0, [1, 11], [2, 22]], 11),
26
42
  ({"value": 3}, ["Switch", "value", 0, [1, 11], [2, 22]], 0),