matensemble 0.4.2__tar.gz → 0.4.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (44) hide show
  1. {matensemble-0.4.2 → matensemble-0.4.3}/PKG-INFO +1 -1
  2. {matensemble-0.4.2 → matensemble-0.4.3}/pyproject.toml +1 -1
  3. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/TODO.md +7 -7
  4. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/strategy.py +10 -2
  5. {matensemble-0.4.2 → matensemble-0.4.3}/LICENSE +0 -0
  6. {matensemble-0.4.2 → matensemble-0.4.3}/README.md +0 -0
  7. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/.python-version +0 -0
  8. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/README.md +0 -0
  9. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/__init__.py +0 -0
  10. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/chore.py +0 -0
  11. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dash/assets/index-1X2cLUgt.js +0 -0
  12. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dash/assets/index-DRkGfWlx.css +0 -0
  13. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dash/index.html +0 -0
  14. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dash/vite.svg +0 -0
  15. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/__init__.py +0 -0
  16. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/driver.py +0 -0
  17. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/ensemble.py +0 -0
  18. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/__init__.py +0 -0
  19. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/bispectrum_calculator.py +0 -0
  20. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/compute_diffraction.py +0 -0
  21. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/compute_order_from_pairs.py +0 -0
  22. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/compute_twist.py +0 -0
  23. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/correlations.py +0 -0
  24. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/postprocessors/ovito_calculators.py +0 -0
  25. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/task_lib/AnalysisSubprocess.py +0 -0
  26. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/task_lib/AnalysysDescriptor.py +0 -0
  27. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/task_lib/MDSubprocess.py +0 -0
  28. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/task_lib/__init__.py +0 -0
  29. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/task_lib/analysis_registry.py +0 -0
  30. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/utils/__init__.py +0 -0
  31. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/utils/lammps_init.py +0 -0
  32. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/utils/preprocessors.py +0 -0
  33. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/utils/stat.py +0 -0
  34. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/dynopro/utils/stress_rotate_z_theta.py +0 -0
  35. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/fluxlet.py +0 -0
  36. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/logger.py +0 -0
  37. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/manager.py +0 -0
  38. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/model.py +0 -0
  39. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/pipeline.py +0 -0
  40. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/redis/__init__.py +0 -0
  41. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/redis/service.py +0 -0
  42. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/redis/test.py +0 -0
  43. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/runtime_worker.py +0 -0
  44. {matensemble-0.4.2 → matensemble-0.4.3}/src/matensemble/utils.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: matensemble
3
- Version: 0.4.2
3
+ Version: 0.4.3
4
4
  Summary: An adaptive and highly asynchronous ensemble simulation workflow manager MatEnsemble (https://github.com/Q-CAD/MatEnsemble) built jointly on top of the hierarchical graph based scheduler FLUX and concurrent-futures infrastructure of python
5
5
  Author: Soumendu Bagchi, Kaleb Duchesneau
6
6
  Author-email: Soumendu Bagchi <soumendubagchi@gmail.com>, Kaleb Duchesneau <kalebduchesneau@gmail.com>
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "matensemble"
3
- version = "0.4.2"
3
+ version = "0.4.3"
4
4
  description = "An adaptive and highly asynchronous ensemble simulation workflow manager MatEnsemble (https://github.com/Q-CAD/MatEnsemble) built jointly on top of the hierarchical graph based scheduler FLUX and concurrent-futures infrastructure of python"
5
5
  readme = "README.md"
6
6
  license-files = ["LICENSE"]
@@ -131,12 +131,12 @@
131
131
  - [x] If that doesn't work break it down into smaller pieces
132
132
  ## --- Smaller pieces ---
133
133
  - [x] Maybe start with an nvidia image rather than Neil's image
134
- - [ ] Make sure that flux works in the container
135
- - [ ] Create a container that just has flux and have some different tests for that
136
- - [ ] Create a container that has just MPI and test that make sure it works
137
- - [ ] Combine flux and MPI and see if that works
138
- - [ ] Create a container that has lammps and make sure that that is working
139
- - [ ] Combine all the pieces
134
+ - [x] Make sure that flux works in the container
135
+ - [x] Create a container that just has flux and have some different tests for that
136
+ - [x] Create a container that has just MPI and test that make sure it works
137
+ - [x] Combine flux and MPI and see if that works
138
+ - [x] Create a container that has lammps and make sure that that is working
139
+ - [x] Combine all the pieces
140
140
 
141
141
  ## --- Test Frontier Apptainer container ---
142
142
  - [x] Need lots more help here
@@ -227,7 +227,7 @@
227
227
  - [x] Patch MatEnsemble to ignore the double free error: 134 or 137 idk whichever one it is
228
228
  - [x] Update the Base image or retag the one that I used to build this john
229
229
  - [x] The double free is likely from symmetrix so forget fixing it
230
- - [ ] Run the release script and do a PR
230
+ - [x] Run the release script and do a PR
231
231
 
232
232
  ## --- Demo ---
233
233
  - [ ] Video demonstrating the MCP server
@@ -191,7 +191,11 @@ class NonAdaptiveStrategy(FutureProcessingStrategy):
191
191
  had_failure = True
192
192
  continue
193
193
 
194
- if rc != 0:
194
+ # rc 134 is a double free or corruption error caused by lammps-symmetrix in the
195
+ # in the frontier image during lammps cleanup
196
+ # the function will still complete successfully and produce a result.pickle file
197
+ # so if we can safely ignore the return code
198
+ if rc != 0 and rc != 134:
195
199
  append_text(
196
200
  chore.workdir / "stderr",
197
201
  f"\n\n===== MATENSEMBLE: NONZERO EXIT =====\nchore={chore_id} rc={rc}\n",
@@ -283,7 +287,11 @@ class UserStrategy(FutureProcessingStrategy):
283
287
  had_failure = True
284
288
  continue
285
289
 
286
- if rc != 0:
290
+ # rc 134 is a double free or corruption error caused by lammps-symmetrix in the
291
+ # in the frontier image during lammps cleanup
292
+ # the function will still complete successfully and produce a result.pickle file
293
+ # so if we can safely ignore the return code
294
+ if rc != 0 and rc != 134:
287
295
  append_text(
288
296
  chore.workdir / "stderr",
289
297
  f"\n\n===== MATENSEMBLE: NONZERO EXIT =====\nchore={chore_id} rc={rc}\n",
File without changes
File without changes