masster 0.5.6__tar.gz → 0.5.7__tar.gz

{masster-0.5.6 → masster-0.5.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: masster
-Version: 0.5.6
+Version: 0.5.7
 Summary: Mass spectrometry data analysis package
 Project-URL: homepage, https://github.com/zamboni-lab/masster
 Project-URL: repository, https://github.com/zamboni-lab/masster

{masster-0.5.6 → masster-0.5.7}/pyproject.toml

@@ -1,7 +1,7 @@
 
 [project]
 name = "masster"
-version = "0.5.6"
+version = "0.5.7"
 description = "Mass spectrometry data analysis package"
 authors = [
     { name = "Zamboni Lab" }

{masster-0.5.6 → masster-0.5.7}/src/masster/_version.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
 
-__version__ = "0.5.6"
+__version__ = "0.5.7"
 
 
 def get_version():

{masster-0.5.6 → masster-0.5.7}/src/masster/sample/plot.py

@@ -86,8 +86,6 @@ def _process_cmap(cmap, fallback="viridis", logger=None):
         cmap = "viridis"
     elif cmap == "grey":
         cmap = "Greys256"
-    elif cmap == "iridescent":
-        cmap = "iridescent_r"
     
     # If cmap package is not available, fall back to process_cmap
     if Colormap is None:
@@ -455,15 +453,15 @@ def plot_2d(
     show_ms2=False,
     show_in_browser=False,
     title=None,
-    cmap=None,
+    cmap='iridescent',
     marker="circle",
-    markersize=10,
+    markersize=5,
     size="static",
     raster_dynamic=True,
     raster_max_px=8,
     raster_threshold=0.8,
     height=600,
-    width=800,
+    width=750,
     mz_range=None,
     rt_range=None
 ):
@@ -529,7 +527,7 @@ def plot_2d(
         return
 
     # Process colormap using the cmap package
-    cmap_palette = _process_cmap(cmap, fallback="iridescent_r", logger=self.logger)
+    cmap_palette = _process_cmap(cmap, fallback="iridescent", logger=self.logger)
 
     # get columns rt, mz, inty from self.ms1_df, It's polars DataFrame
     spectradf = self.ms1_df.select(["rt", "mz", "inty"])

{masster-0.5.6 → masster-0.5.7}/src/masster/study/defaults/merge_def.py

@@ -25,7 +25,7 @@ class merge_defaults:
         link_ms2 (bool): Whether to link MS2 spectra to consensus features. Default is True.
     """
 
-    method: str = "kd"
+    method: str = "qt"
     min_samples: int = 2
     rt_tol: float = 5.0
     mz_tol: float = 0.05

{masster-0.5.6 → masster-0.5.7}/uv.lock

@@ -1393,7 +1393,7 @@ wheels = [
 
 [[package]]
 name = "masster"
-version = "0.5.6"
+version = "0.5.7"
 source = { editable = "." }
 dependencies = [
     { name = "alpharaw" },