masster 0.5.15__tar.gz → 0.5.17__tar.gz

{masster-0.5.15 → masster-0.5.17}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: masster
-Version: 0.5.15
+Version: 0.5.17
 Summary: Mass spectrometry data analysis package
 Project-URL: homepage, https://github.com/zamboni-lab/masster
 Project-URL: repository, https://github.com/zamboni-lab/masster
@@ -681,7 +681,6 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
 Classifier: Topic :: Scientific/Engineering :: Chemistry
 Requires-Python: >=3.11
 Requires-Dist: alpharaw>=0.4.8
-Requires-Dist: altair>=5.5.0
 Requires-Dist: bokeh>=3.7.3
 Requires-Dist: cmap>=0.6.2
 Requires-Dist: datashader>=0.18.1
@@ -698,7 +697,6 @@ Requires-Dist: pandas>=2.2.0
 Requires-Dist: panel>=1.7.0
 Requires-Dist: polars>=1.0.0
 Requires-Dist: pyopenms>=3.3.0
-Requires-Dist: pyteomics>=4.7.0
 Requires-Dist: pythonnet>=3.0.0
 Requires-Dist: scikit-learn>=1.7.1
 Requires-Dist: scipy>=1.12.0

{masster-0.5.15 → masster-0.5.17}/pyproject.toml

@@ -1,7 +1,7 @@
 
 [project]
 name = "masster"
-version = "0.5.15"
+version = "0.5.17"
 description = "Mass spectrometry data analysis package"
 authors = [
     { name = "Zamboni Lab" }
@@ -27,7 +27,6 @@ urls.repository = "https://github.com/zamboni-lab/masster"
 urls.documentation = "https://github.com/zamboni-lab/masster#readme"
 dependencies = [
     "alpharaw>=0.4.8",
-    "altair>=5.5.0",
     "bokeh>=3.7.3",
     "datashader>=0.18.1",
     "holoviews>=1.21.0",
@@ -40,7 +39,6 @@ dependencies = [
     "panel>=1.7.0",
     "polars>=1.0.0",
     "pyopenms>=3.3.0",
-    "pyteomics>=4.7.0",
     "pythonnet>=3.0.0",
     "scipy>=1.12.0",
     "tqdm>=4.65.0",

{masster-0.5.15 → masster-0.5.17}/src/masster/__init__.py

@@ -22,7 +22,7 @@ from masster.lib import Lib
 from masster.sample.sample import Sample
 from masster.spectrum import Spectrum
 from masster.study.study import Study
-from masster.wizard import Wizard, wizard_def
+from masster.wizard import Wizard
 
 
 __all__ = [

{masster-0.5.15 → masster-0.5.17}/src/masster/_version.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
 
-__version__ = "0.5.15"
+__version__ = "0.5.17"
 
 
 def get_version():

{masster-0.5.15 → masster-0.5.17}/src/masster/study/plot.py

@@ -449,6 +449,9 @@ def plot_alignment(
             rt_current = row_dict["rt"]
             mz = row_dict["mz"]
             inty = row_dict["inty"]
+            # Skip if inty is None
+            if inty is None:
+                continue
             alpha = inty / max_inty
             size = markersize + 2 if sample_idx == 0 else markersize
 

{masster-0.5.15 → masster-0.5.17}/src/masster/wizard/__init__.py

@@ -12,6 +12,6 @@ The analyze() function combines create_analysis() with immediate execution of th
 generated script for fully automated processing.
 """
 
-from .wizard import Wizard, wizard_def, create_analysis, analyze
+from .wizard import Wizard, wizard_def, create_scripts
 
-__all__ = ["Wizard", "wizard_def", "create_analysis", "analyze"]
+__all__ = ["Wizard", "wizard_def", "create_scripts"]