marsilea 0.5.0__tar.gz → 0.5.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. {marsilea-0.5.0 → marsilea-0.5.1}/PKG-INFO +9 -1
  2. {marsilea-0.5.0 → marsilea-0.5.1}/README.md +8 -0
  3. {marsilea-0.5.0 → marsilea-0.5.1}/pyproject.toml +1 -1
  4. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/__init__.py +1 -1
  5. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/upset.py +8 -3
  6. {marsilea-0.5.0 → marsilea-0.5.1}/.gitignore +0 -0
  7. {marsilea-0.5.0 → marsilea-0.5.1}/LICENSE +0 -0
  8. {marsilea-0.5.0 → marsilea-0.5.1}/setup.py +0 -0
  9. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/_api.py +0 -0
  10. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/_deform.py +0 -0
  11. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/base.py +0 -0
  12. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/dataset.py +0 -0
  13. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/dendrogram.py +0 -0
  14. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/exceptions.py +0 -0
  15. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/heatmap.py +0 -0
  16. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/layers.py +0 -0
  17. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/layout.py +0 -0
  18. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/__init__.py +0 -0
  19. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/_seaborn.py +0 -0
  20. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/_utils.py +0 -0
  21. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/arc.py +0 -0
  22. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/area.py +0 -0
  23. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/bar.py +0 -0
  24. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/base.py +0 -0
  25. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/bio.py +0 -0
  26. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/images.py +0 -0
  27. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/mesh.py +0 -0
  28. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/range.py +0 -0
  29. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/plotter/text.py +0 -0
  30. {marsilea-0.5.0 → marsilea-0.5.1}/src/marsilea/utils.py +0 -0
  31. {marsilea-0.5.0 → marsilea-0.5.1}/src/oncoprinter/__init__.py +0 -0
  32. {marsilea-0.5.0 → marsilea-0.5.1}/src/oncoprinter/core.py +0 -0
  33. {marsilea-0.5.0 → marsilea-0.5.1}/src/oncoprinter/preset.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: marsilea
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- Version: 0.5.0
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+ Version: 0.5.1
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  Summary: Declarative creation of composable visualizations
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  Project-URL: Home, https://github.com/Marsilea-viz/marsilea
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  Project-URL: Documentation, https://marsilea.readthedocs.io
@@ -56,6 +56,8 @@ Description-Content-Type: text/markdown
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  ![PyPI - License](https://img.shields.io/pypi/l/marsilea?color=FFD43B&style=flat-square)
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  [![DOI](https://img.shields.io/badge/DOI-10.1186%2Fs13059--024--03469--3-blue?color=0098FF&style=flat-square)](https://doi.org/10.1186/s13059-024-03469-3)
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+ [![Gitter](https://img.shields.io/gitter/room/Marsilea/Questions?style=flat-square)](https://app.gitter.im/#/room/#Marsilea:gitter.im)
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+
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  # Marsilea: Declarative creation of composable visualization!
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  ---
@@ -103,6 +105,12 @@ If you use Marsilea in your research, please cite the following:
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  >
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  > _Genome Biology_ 2025 Jan 06. DOI: [10.1186/s13059-017-1382-0](https://doi.org/10.1186/s13059-024-03469-3)
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+ ## Get helps
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+
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+ 1. Open an issue
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+ 2. Join us on [Gitter](https://app.gitter.im/#/room/#Marsilea:gitter.im)
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+
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+
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  ## Examples
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  <table>
@@ -12,6 +12,8 @@
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  ![PyPI - License](https://img.shields.io/pypi/l/marsilea?color=FFD43B&style=flat-square)
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  [![DOI](https://img.shields.io/badge/DOI-10.1186%2Fs13059--024--03469--3-blue?color=0098FF&style=flat-square)](https://doi.org/10.1186/s13059-024-03469-3)
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+ [![Gitter](https://img.shields.io/gitter/room/Marsilea/Questions?style=flat-square)](https://app.gitter.im/#/room/#Marsilea:gitter.im)
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+
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  # Marsilea: Declarative creation of composable visualization!
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  ---
@@ -59,6 +61,12 @@ If you use Marsilea in your research, please cite the following:
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  >
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  > _Genome Biology_ 2025 Jan 06. DOI: [10.1186/s13059-017-1382-0](https://doi.org/10.1186/s13059-024-03469-3)
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+ ## Get helps
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+
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+ 1. Open an issue
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+ 2. Join us on [Gitter](https://app.gitter.im/#/room/#Marsilea:gitter.im)
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+
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+
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  ## Examples
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  <table>
@@ -28,7 +28,7 @@ dependencies = [
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  "seaborn",
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  "scipy",
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  "legendkit",
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- "platformdirs"
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+ "platformdirs",
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  ]
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  [tool.hatch.version]
@@ -1,6 +1,6 @@
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  """Declarative creation of composable visualization"""
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- __version__ = "0.5.0"
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+ __version__ = "0.5.1"
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  import marsilea.plotter as plotter
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  from ._deform import Deformation
@@ -239,8 +239,8 @@ class UpsetData:
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  marks = marks & (sets_table["cardinality"] <= max_cardinality)
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  if min_degree is not None:
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  marks = marks & (sets_table["degree"] >= min_degree)
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- if min_degree is not None:
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- marks = marks & (sets_table["degree"] >= max_degree)
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+ if max_degree is not None:
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+ marks = marks & (sets_table["degree"] <= max_degree)
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  return marks
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  def reset(self):
@@ -561,6 +561,7 @@ class Upset(WhiteBoard):
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  self._legend_entries = []
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  self._add_intersections = add_intersections
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  self._intersection_bar = None
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+ self._intersection_bar_side = None
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  self._sets_size_bar = None
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  if orient not in ["h", "v"]:
@@ -732,6 +733,7 @@ class Upset(WhiteBoard):
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  )
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  data = self.data.cardinality()
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  self._intersection_bar = Numbers(data, color=self.color)
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+ self._intersection_bar_side = side
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  self.add_plot(side, self._intersection_bar, size=size, pad=pad)
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  def add_sets_size(self, side, pad=0.1, size=1.0, **props):
@@ -956,7 +958,10 @@ class Upset(WhiteBoard):
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  self._render_matrix(main_ax)
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  # apply highlight style to bar
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  if self._add_intersections:
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- for ix, rect in enumerate(self._intersection_bar.bars):
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+ bars = self._intersection_bar.bars
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+ if self._intersection_bar_side in {"left", "right"}:
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+ bars = bars[::-1]
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+ for ix, rect in enumerate(bars):
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  bar_style = self._subset_styles.get(ix)
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  if bar_style is not None:
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  rect.set(**bar_style)
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