marsilea 0.4.1__tar.gz → 0.4.3__tar.gz

marsilea-0.4.3/PKG-INFO

@@ -0,0 +1,168 @@
+Metadata-Version: 2.3
+Name: marsilea
+Version: 0.4.3
+Dynamic: Summary
+Project-URL: Home, https://github.com/Marsilea-viz/marsilea
+Author: Zhihang Zheng
+Author-email: Mr-Milk <yzheng@cemm.at>
+License: The MIT License (MIT)
+        
+        Copyright (c) 2024 Mr-Milk
+        
+        Permission is hereby granted, free of charge, to any person obtaining a copy
+        of this software and associated documentation files (the "Software"), to deal
+        in the Software without restriction, including without limitation the rights
+        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+        copies of the Software, and to permit persons to whom the Software is
+        furnished to do so, subject to the following conditions:
+        
+        The above copyright notice and this permission notice shall be included in
+        all copies or substantial portions of the Software.
+        
+        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+        THE SOFTWARE.
+License-File: LICENSE
+Classifier: Framework :: Matplotlib
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Requires-Python: >=3.8
+Requires-Dist: legendkit
+Requires-Dist: matplotlib>=3.6
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: platformdirs
+Requires-Dist: scipy
+Requires-Dist: seaborn
+Provides-Extra: dev
+Requires-Dist: icecream; extra == 'dev'
+Requires-Dist: mpl-fontkit; extra == 'dev'
+Requires-Dist: numpydoc; extra == 'dev'
+Requires-Dist: pydata-sphinx-theme; extra == 'dev'
+Requires-Dist: pytest; extra == 'dev'
+Requires-Dist: python-hmr; extra == 'dev'
+Requires-Dist: ruff; extra == 'dev'
+Requires-Dist: scikit-learn; extra == 'dev'
+Requires-Dist: sphinx; extra == 'dev'
+Requires-Dist: sphinx-copybutton; extra == 'dev'
+Requires-Dist: sphinx-design; extra == 'dev'
+Requires-Dist: sphinx-gallery; extra == 'dev'
+Description-Content-Type: text/markdown
+
+<p align="center">
+  <picture align="center">
+    <source media="(prefers-color-scheme: dark)" srcset="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg">
+    <source media="(prefers-color-scheme: light)" srcset="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-blue.jpg">
+    <img alt="Shows a bar chart with benchmark results." src="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg" width="400">
+  </picture>
+</p>
+
+[![Documentation Status](https://img.shields.io/readthedocs/marsilea?color=57B77E&logo=readthedocs&logoColor=white&style=flat-square)](https://marsilea.readthedocs.io/en/stable)
+![pypi version](https://img.shields.io/pypi/v/marsilea?color=0098FF&logo=python&logoColor=white&style=flat-square)
+![PyPI - License](https://img.shields.io/pypi/l/marsilea?color=FFD43B&style=flat-square)
+
+# Marsilea: Declarative creation of composable visualization!
+
+---
+
+## Documentation
+
+You can read the documentation on Read the Docs.
+
+[Read Documentation](https://marsilea.readthedocs.io/)
+
+## Installation
+
+```shell
+pip install marsilea
+```
+
+## What is Composable Visualization?
+
+<p align="center">
+  <picture align="center">
+    <img alt="Shows a bar chart with benchmark results." src="https://github.com/Marsilea-viz/marsilea/raw/main/img/showcase.gif" width="300">
+  </picture>
+</p>
+
+When we do visualization, we often need to combine multiple plots to show different aspects of the data.
+For example, we may need to create a heatmap to show the expression of genes in different cells,
+and then create a bar chart to show the expression of genes in different cell types.
+A visualization contains multiple plots is called a composable visualization.
+In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.
+
+## Examples
+
+<table>
+    <thead>
+        <tr>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_tiobe_index.html">
+                    Bar Chart With Image
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_oil_well.html">
+                    Stacked Bar
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_arc_diagram.html">
+                    Arc Diagram
+                </a>
+            </th>
+        </tr>
+    </thead>
+    <tbody>
+        <tr>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_tiobe_index_001_2_00x.png" height="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_oil_well_001_2_00x.png" height="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_arc_diagram_001_2_00x.png" width="300px">
+            </td>
+        </tr>
+    </tbody>
+</table>
+
+<table>
+    <thead>
+        <tr>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_pbmc3k.html">
+                    Heatmap
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_oncoprint.html">
+                    Oncoprint
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_upset.html">
+                    Upsetplot
+                </a>
+            </th>
+        </tr>
+    </thead>
+    <tbody>
+        <tr>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_pbmc3k_001_2_00x.png" width="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_oncoprint_005_2_00x.png" width="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_upset_001_2_00x.png" width="300px">
+            </td>
+        </tr>
+    </tbody>
+</table>

marsilea-0.4.3/README.md

@@ -0,0 +1,113 @@
+<p align="center">
+  <picture align="center">
+    <source media="(prefers-color-scheme: dark)" srcset="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg">
+    <source media="(prefers-color-scheme: light)" srcset="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-blue.jpg">
+    <img alt="Shows a bar chart with benchmark results." src="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg" width="400">
+  </picture>
+</p>
+
+[![Documentation Status](https://img.shields.io/readthedocs/marsilea?color=57B77E&logo=readthedocs&logoColor=white&style=flat-square)](https://marsilea.readthedocs.io/en/stable)
+![pypi version](https://img.shields.io/pypi/v/marsilea?color=0098FF&logo=python&logoColor=white&style=flat-square)
+![PyPI - License](https://img.shields.io/pypi/l/marsilea?color=FFD43B&style=flat-square)
+
+# Marsilea: Declarative creation of composable visualization!
+
+---
+
+## Documentation
+
+You can read the documentation on Read the Docs.
+
+[Read Documentation](https://marsilea.readthedocs.io/)
+
+## Installation
+
+```shell
+pip install marsilea
+```
+
+## What is Composable Visualization?
+
+<p align="center">
+  <picture align="center">
+    <img alt="Shows a bar chart with benchmark results." src="https://github.com/Marsilea-viz/marsilea/raw/main/img/showcase.gif" width="300">
+  </picture>
+</p>
+
+When we do visualization, we often need to combine multiple plots to show different aspects of the data.
+For example, we may need to create a heatmap to show the expression of genes in different cells,
+and then create a bar chart to show the expression of genes in different cell types.
+A visualization contains multiple plots is called a composable visualization.
+In Marsilea, we employ a declarative approach for user to create composable visualization incrementally.
+
+## Examples
+
+<table>
+    <thead>
+        <tr>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_tiobe_index.html">
+                    Bar Chart With Image
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_oil_well.html">
+                    Stacked Bar
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_arc_diagram.html">
+                    Arc Diagram
+                </a>
+            </th>
+        </tr>
+    </thead>
+    <tbody>
+        <tr>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_tiobe_index_001_2_00x.png" height="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_oil_well_001_2_00x.png" height="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_arc_diagram_001_2_00x.png" width="300px">
+            </td>
+        </tr>
+    </tbody>
+</table>
+
+<table>
+    <thead>
+        <tr>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_pbmc3k.html">
+                    Heatmap
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_oncoprint.html">
+                    Oncoprint
+                </a>
+            </th>
+            <th>
+                <a href="https://marsilea.readthedocs.io/en/latest/examples/Gallery/plot_upset.html">
+                    Upsetplot
+                </a>
+            </th>
+        </tr>
+    </thead>
+    <tbody>
+        <tr>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_pbmc3k_001_2_00x.png" width="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_oncoprint_005_2_00x.png" width="300px">
+            </td>
+            <td>
+                <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_upset_001_2_00x.png" width="300px">
+            </td>
+        </tr>
+    </tbody>
+</table>

{marsilea-0.4.1 → marsilea-0.4.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [build-system]
-requires = ["flit_core >=3.2,<4"]
-build-backend = "flit_core.buildapi"
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
 [project]
 name = "marsilea"
@@ -44,7 +44,13 @@ dev = [
     "mpl_fontkit"
 ]
 
-[tool.flit.sdist]
+[tool.hatch.version]
+path = "src/marsilea/__init__.py"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/marsilea", "src/oncoprinter"]
+
+[tool.hatch.build.targets.sdist]
 exclude = [
     "docs",
     "app",
@@ -54,6 +60,17 @@ exclude = [
     "scripts",
     "readthedocs.yaml",
 ]
+include = [
+    "README.md",
+    "LICENSE",
+    "pyproject.toml",
+    "setup.py",
+    "src/marsilea",
+    "src/oncoprinter",
+]
+
+[tool.ruff.format]
+docstring-code-format = true
 
 [tool.ruff.lint.per-file-ignores]
 "__init__.py" = ["F401"]

{marsilea-0.4.1 → marsilea-0.4.3}/src/marsilea/__init__.py

@@ -1,6 +1,6 @@
 """Declarative creation of composable visualization"""
 
-__version__ = "0.4.1"
+__version__ = "0.4.3"
 
 import marsilea.plotter as plotter
 from ._deform import Deformation

{marsilea-0.4.1 → marsilea-0.4.3}/src/marsilea/_deform.py

@@ -84,19 +84,29 @@ class Deformation:
         self.data_col_reindex = reindex
         self._col_clustered = False
 
-    def set_cluster(self, col=None, row=None, use_meta=True, linkage=None, **kwargs):
+    def set_cluster(
+        self,
+        col=None,
+        row=None,
+        use_meta=True,
+        linkage=None,
+        meta_linkage=None,
+        **kwargs,
+    ):
         if col is not None:
             self.is_col_cluster = col
             self.col_cluster_kws = kwargs
             self._col_clustered = False
             self._use_col_meta = use_meta
             self.col_linkage = linkage
+            self.col_meta_linkage = meta_linkage
         if row is not None:
             self.is_row_cluster = row
             self.row_cluster_kws = kwargs
             self._row_clustered = False
             self._use_row_meta = use_meta
             self.row_linkage = linkage
+            self.row_meta_linkage = meta_linkage
 
     def get_data(self):
         data = self.data
@@ -204,7 +214,9 @@ class Deformation:
                     Dendrogram(chunk, linkage=linkage, key=k, **self.row_cluster_kws)
                 )
 
-            dg = GroupDendrogram(dens, **self.row_cluster_kws)
+            dg = GroupDendrogram(
+                dens, linkage=self.row_meta_linkage, **self.row_cluster_kws
+            )
             if self._use_row_meta:
                 self.row_chunk_index = dg.reorder_index
             else:
@@ -232,7 +244,9 @@ class Deformation:
                 dens.append(
                     Dendrogram(chunk.T, linkage=linkage, key=k, **self.col_cluster_kws)
                 )
-            dg = GroupDendrogram(dens, **self.col_cluster_kws)
+            dg = GroupDendrogram(
+                dens, linkage=self.col_meta_linkage, **self.col_cluster_kws
+            )
             if self._use_col_meta:
                 self.col_chunk_index = dg.reorder_index
             else:

{marsilea-0.4.1 → marsilea-0.4.3}/src/marsilea/base.py

@@ -606,9 +606,15 @@ class WhiteBoard(LegendMaker):
         return compose_board
 
     def _freeze_flex_plots(self, figure):
+        main_cell = self.layout.main_cell
+        main_width = main_cell.width
+        main_height = main_cell.height
+
         for plan in self._col_plan + self._row_plan:
             if plan.size is None:
-                render_size = plan.get_canvas_size(figure)
+                render_size = plan.get_canvas_size(
+                    figure, main_width=main_width, main_height=main_height
+                )
                 if render_size is not None:
                     self.layout.set_render_size(plan.name, render_size)
 
@@ -835,6 +841,7 @@ class ClusterBoard(WhiteBoard):
         method=None,
         metric=None,
         linkage=None,
+        meta_linkage=None,
         add_meta=True,
         add_base=True,
         add_divider=True,
@@ -848,6 +855,7 @@ class ClusterBoard(WhiteBoard):
         size=0.5,
         pad=0.0,
         get_meta_center=None,
+        rasterized=False,
     ):
         """Run cluster and add dendrogram
 
@@ -869,6 +877,10 @@ class ClusterBoard(WhiteBoard):
             Precomputed linkage matrix.
             See scipy's :meth:`linkage <scipy.cluster.hierarchy.linkage>` for
             specific format.
+        meta_linkage : ndarray
+            Precomputed chunk-level linkage matrix.
+            See scipy's :meth:`linkage <scipy.cluster.hierarchy.linkage>` for
+            specific format.
         add_meta : None | bool
             By default, add_meta is set to False if the linkage is provided, otherwise True.
             If the data is split, a meta dendrogram can be drawn for data
@@ -905,6 +917,8 @@ class ClusterBoard(WhiteBoard):
             array as input and return a 1D numpy array of the same length as the number
             of columns in the input, representing the centroid. The default will use the
             mean values.
+        rasterized : bool
+            If True, the dendrogram will be rasterized
 
         Examples
         --------
@@ -926,7 +940,7 @@ class ClusterBoard(WhiteBoard):
             :context: close-figs
 
             >>> h = ma.Heatmap(data)
-            >>> h.hsplit(cut=[4, 8])
+            >>> h.cut_rows(cut=[4, 8])
             >>> h.add_dendrogram("left", add_base=False)
             >>> h.render()
 
@@ -936,7 +950,7 @@ class ClusterBoard(WhiteBoard):
             :context: close-figs
 
             >>> h = ma.Heatmap(data)
-            >>> h.hsplit(cut=[4, 8])
+            >>> h.cut_rows(cut=[4, 8])
             >>> h.add_dendrogram("left", colors=["#5470c6", "#91cc75", "#fac858"])
             >>> h.render()
 
@@ -974,6 +988,7 @@ class ClusterBoard(WhiteBoard):
             colors=colors,
             divider_style=divider_style,
             meta_ratio=meta_ratio,
+            rasterized=rasterized,
         )
 
         deform = self.get_deform()
@@ -985,8 +1000,10 @@ class ClusterBoard(WhiteBoard):
                 method=method,
                 metric=metric,
                 linkage=linkage,
+                meta_linkage=meta_linkage,
                 use_meta=add_meta,
                 get_meta_center=get_meta_center,
+                rasterized=rasterized,
             )
         else:
             den_options["pos"] = "col"
@@ -996,8 +1013,10 @@ class ClusterBoard(WhiteBoard):
                 method=method,
                 metric=metric,
                 linkage=linkage,
+                meta_linkage=meta_linkage,
                 use_meta=add_meta,
                 get_meta_center=get_meta_center,
+                rasterized=rasterized,
             )
 
     def hsplit(self, cut=None, labels=None, order=None, spacing=0.01):
@@ -1160,7 +1179,7 @@ class ClusterBoard(WhiteBoard):
             >>> h = ma.Heatmap(data)
             >>> labels = ["A", "B", "C", "A", "B", "C", "A", "B", "C", "A"]
             >>> h.group_rows(labels, order=["A", "B", "C"])
-            >>> h.add_left(ma.plotter.Labels(labels), pad=.1)
+            >>> h.add_left(ma.plotter.Labels(labels), pad=0.1)
             >>> h.render()
 
         """
@@ -1202,7 +1221,7 @@ class ClusterBoard(WhiteBoard):
             >>> h = ma.Heatmap(data)
             >>> labels = ["A", "B", "C", "A", "B", "C", "A", "B", "C", "A"]
             >>> h.group_cols(labels, order=["A", "B", "C"])
-            >>> h.add_top(ma.plotter.Labels(labels), pad=.1)
+            >>> h.add_top(ma.plotter.Labels(labels), pad=0.1)
             >>> h.render()
 
         """
@@ -1334,7 +1353,11 @@ class ClusterBoard(WhiteBoard):
                     if (color is not None) & (not is_color_like(color)):
                         color = color[0]
                     den_obj.draw(
-                        ax, orient=den["side"], color=color, linewidth=den["linewidth"]
+                        ax,
+                        orient=den["side"],
+                        color=color,
+                        linewidth=den["linewidth"],
+                        rasterized=den["rasterized"],
                     )
                 else:
                     den_obj.draw(
@@ -1349,6 +1372,7 @@ class ClusterBoard(WhiteBoard):
                         divide=den["add_divider"],
                         divide_style=den["divider_style"],
                         meta_ratio=den["meta_ratio"],
+                        rasterized=den["rasterized"],
                     )
 
     def _render_plan(self):

{marsilea-0.4.1 → marsilea-0.4.3}/src/marsilea/dendrogram.py

@@ -18,6 +18,7 @@ class _DendrogramBase:
         linkage=None,
         get_meta_center=None,
         key=None,
+        **kwargs,
     ):
         self.key = key
         self.data = data
@@ -137,7 +138,9 @@ class _DendrogramBase:
         y1 = yc[1]
         return x1, y1
 
-    def _draw_dendrogram(self, ax, orient="top", color=".1", linewidth=0.7):
+    def _draw_dendrogram(
+        self, ax, orient="top", color=".1", linewidth=0.7, rasterized=False
+    ):
         x_coords = self._render_x_coords
         y_coords = self._render_y_coords
         if orient in ["right", "left"]:
@@ -147,6 +150,7 @@ class _DendrogramBase:
             [list(zip(x, y)) for x, y in zip(x_coords, y_coords)],
             color=color,
             linewidth=linewidth,
+            rasterized=rasterized,
         )
         ax.add_collection(lines)
 
@@ -173,6 +177,7 @@ class Dendrogram(_DendrogramBase):
         linkage=None,
         get_meta_center=None,
         key=None,
+        **kwargs,
     ):
         super().__init__(
             data,
@@ -181,6 +186,7 @@ class Dendrogram(_DendrogramBase):
             key=key,
             linkage=linkage,
             get_meta_center=get_meta_center,
+            **kwargs,
         )
 
     # here we left an empty **kwargs to align api with GroupDendrogram
@@ -193,6 +199,7 @@ class Dendrogram(_DendrogramBase):
         add_root=False,
         root_color=None,
         control_ax=True,
+        rasterized=False,
         **kwargs,
     ):
         """
@@ -210,6 +217,8 @@ class Dendrogram(_DendrogramBase):
             The color of the root line
         control_ax : bool
             Adjust the axes to ensure the dendrogram will display correctly
+        rasterized : bool
+            Rasterize the dendrogram to speed up rendering
 
         Returns
         -------
@@ -219,7 +228,9 @@ class Dendrogram(_DendrogramBase):
         root_color = color if root_color is None else root_color
         linewidth = 0.7 if linewidth is None else linewidth
 
-        self._draw_dendrogram(ax, orient=orient, color=color, linewidth=linewidth)
+        self._draw_dendrogram(
+            ax, orient=orient, color=color, linewidth=linewidth, rasterized=rasterized
+        )
 
         xlim = self._render_xlim
         ylim = self._render_ylim
@@ -244,7 +255,11 @@ class Dendrogram(_DendrogramBase):
                 x2 = x1
                 y2 = ylim[1]
             root_line = Line2D(
-                [x1, x2], [y1, y2], color=root_color, linewidth=linewidth
+                [x1, x2],
+                [y1, y2],
+                color=root_color,
+                linewidth=linewidth,
+                rasterized=rasterized,
             )
             ax.add_artist(root_line)
 
@@ -267,13 +282,20 @@ class GroupDendrogram(_DendrogramBase):
         dens: List[Dendrogram],
         method=None,
         metric=None,
+        linkage=None,
         get_meta_center=None,
         key=None,
         **kwargs,
     ):
         data = np.vstack([d.center for d in dens])
         super().__init__(
-            data, method=method, metric=metric, get_meta_center=get_meta_center, key=key
+            data,
+            method=method,
+            metric=metric,
+            linkage=linkage,
+            get_meta_center=get_meta_center,
+            key=key,
+            **kwargs,
         )
         self.orig_dens = np.asarray(dens)
         self.dens = np.asarray(dens)[self.reorder_index]
@@ -305,6 +327,7 @@ class GroupDendrogram(_DendrogramBase):
         divide=True,
         divide_style="--",
         meta_ratio=0.2,
+        rasterized=False,
     ):
         """
 
@@ -330,6 +353,8 @@ class GroupDendrogram(_DendrogramBase):
             The linestyle of the divide line
         meta_ratio : float
             The size of meta dendrogram relative to the base dendrogram
+        rasterized : bool
+            Rasterize the dendrogram to speed up rendering
 
         """
 
@@ -418,7 +443,11 @@ class GroupDendrogram(_DendrogramBase):
         if add_meta:
             # Add meta dendrogram
             self._draw_dendrogram(
-                ax, orient=orient, color=meta_color, linewidth=linewidth
+                ax,
+                orient=orient,
+                color=meta_color,
+                linewidth=linewidth,
+                rasterized=rasterized,
             )
 
         if divide & add_base & add_meta:
@@ -432,6 +461,7 @@ class GroupDendrogram(_DendrogramBase):
                     linestyles=divide_style,
                     color=meta_color,
                     linewidth=linewidth,
+                    rasterized=rasterized,
                 )
             else:
                 ax.vlines(
@@ -441,6 +471,7 @@ class GroupDendrogram(_DendrogramBase):
                     linestyles=divide_style,
                     color=meta_color,
                     linewidth=linewidth,
+                    rasterized=rasterized,
                 )
 
         if add_base:
@@ -455,6 +486,7 @@ class GroupDendrogram(_DendrogramBase):
                         linewidth=linewidth,
                         root_color=meta_color,
                         control_ax=False,
+                        rasterized=rasterized,
                     )
 
         xlim = render_xlim