marsilea 0.3.4__tar.gz → 0.3.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (259) hide show
  1. {marsilea-0.3.4 → marsilea-0.3.5}/PKG-INFO +1 -1
  2. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_upset.py +1 -1
  3. {marsilea-0.3.4 → marsilea-0.3.5}/src/marsilea/__init__.py +1 -1
  4. {marsilea-0.3.4 → marsilea-0.3.5}/src/marsilea/base.py +1 -1
  5. {marsilea-0.3.4 → marsilea-0.3.5}/src/marsilea/plotter/_seaborn.py +7 -1
  6. {marsilea-0.3.4 → marsilea-0.3.5}/.github/workflows/build.yaml +0 -0
  7. {marsilea-0.3.4 → marsilea-0.3.5}/.github/workflows/deploy_streamlit.yaml +0 -0
  8. {marsilea-0.3.4 → marsilea-0.3.5}/.github/workflows/lint.yaml +0 -0
  9. {marsilea-0.3.4 → marsilea-0.3.5}/.gitignore +0 -0
  10. {marsilea-0.3.4 → marsilea-0.3.5}/.streamlit/config.toml +0 -0
  11. {marsilea-0.3.4 → marsilea-0.3.5}/CITATION.cff +0 -0
  12. {marsilea-0.3.4 → marsilea-0.3.5}/CODE_OF_CONDUCT.md +0 -0
  13. {marsilea-0.3.4 → marsilea-0.3.5}/LICENSE +0 -0
  14. {marsilea-0.3.4 → marsilea-0.3.5}/README.md +0 -0
  15. {marsilea-0.3.4 → marsilea-0.3.5}/app/.gitignore +0 -0
  16. {marsilea-0.3.4 → marsilea-0.3.5}/app/Dockerfile +0 -0
  17. {marsilea-0.3.4 → marsilea-0.3.5}/app/Home.py +0 -0
  18. {marsilea-0.3.4 → marsilea-0.3.5}/app/README.md +0 -0
  19. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/__init__.py +0 -0
  20. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/cmap_selector/__init__.py +0 -0
  21. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/cmap_selector/selector.py +0 -0
  22. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/data_input.py +0 -0
  23. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/example_download.py +0 -0
  24. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/initialize.py +0 -0
  25. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/main_plots.py +0 -0
  26. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/resource.py +0 -0
  27. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/saver.py +0 -0
  28. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/side_plots.py +0 -0
  29. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/state.py +0 -0
  30. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/transformation.py +0 -0
  31. {marsilea-0.3.4 → marsilea-0.3.5}/app/components/upset_example.csv +0 -0
  32. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/V1.mp4 +0 -0
  33. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/V2.mp4 +0 -0
  34. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/annolabels.png +0 -0
  35. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/bar.png +0 -0
  36. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/box.png +0 -0
  37. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/boxen.png +0 -0
  38. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/colors.png +0 -0
  39. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/dendrogram.svg +0 -0
  40. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/favicon.png +0 -0
  41. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/favicon.svg +0 -0
  42. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/heatmap.png +0 -0
  43. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/heatmap.svg +0 -0
  44. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/logo.png +0 -0
  45. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/mark_map.png +0 -0
  46. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/mark_map.svg +0 -0
  47. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/point.png +0 -0
  48. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/sized_heatmap.png +0 -0
  49. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/sized_heatmap.svg +0 -0
  50. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/sized_onlymap.png +0 -0
  51. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/strip.png +0 -0
  52. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/swarm.png +0 -0
  53. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/violin.png +0 -0
  54. {marsilea-0.3.4 → marsilea-0.3.5}/app/img/x-layout.png +0 -0
  55. {marsilea-0.3.4 → marsilea-0.3.5}/app/pages/01 Simple_Heatmap.py +0 -0
  56. {marsilea-0.3.4 → marsilea-0.3.5}/app/pages/02 X-Layout_Heatmap.py +0 -0
  57. {marsilea-0.3.4 → marsilea-0.3.5}/app/pages/03 Upsetplot.py +0 -0
  58. {marsilea-0.3.4 → marsilea-0.3.5}/app/pages/04 Manual.py +0 -0
  59. {marsilea-0.3.4 → marsilea-0.3.5}/app/requirements.txt +0 -0
  60. {marsilea-0.3.4 → marsilea-0.3.5}/app/script/heatmap_data.py +0 -0
  61. {marsilea-0.3.4 → marsilea-0.3.5}/app/script/plot_layer_example_images.py +0 -0
  62. {marsilea-0.3.4 → marsilea-0.3.5}/app/script/plotter_example_images.py +0 -0
  63. {marsilea-0.3.4 → marsilea-0.3.5}/app/set_data_memberships.txt +0 -0
  64. {marsilea-0.3.4 → marsilea-0.3.5}/app/test.xlsx +0 -0
  65. {marsilea-0.3.4 → marsilea-0.3.5}/app/test_data/Stats_plot.txt +0 -0
  66. {marsilea-0.3.4 → marsilea-0.3.5}/app/test_data/example_data.txt +0 -0
  67. {marsilea-0.3.4 → marsilea-0.3.5}/app/test_data/number.txt +0 -0
  68. {marsilea-0.3.4 → marsilea-0.3.5}/app/test_data/row_labels.txt +0 -0
  69. {marsilea-0.3.4 → marsilea-0.3.5}/app/test_data/set_data_memberships.txt +0 -0
  70. {marsilea-0.3.4 → marsilea-0.3.5}/app/upset.xlsx +0 -0
  71. {marsilea-0.3.4 → marsilea-0.3.5}/data/IMDB.csv +0 -0
  72. {marsilea-0.3.4 → marsilea-0.3.5}/data/PATIENT_DATA_oncoprint.tsv +0 -0
  73. {marsilea-0.3.4 → marsilea-0.3.5}/data/pbmc3k.h5ad +0 -0
  74. {marsilea-0.3.4 → marsilea-0.3.5}/docs/Makefile +0 -0
  75. {marsilea-0.3.4 → marsilea-0.3.5}/docs/README.md +0 -0
  76. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/.gitignore +0 -0
  77. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Basics/README.rst +0 -0
  78. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Basics/plot_adv_heatmap.py +0 -0
  79. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Basics/plot_heatmap.py +0 -0
  80. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Basics/plot_stacked_bar.py +0 -0
  81. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Basics/plot_two_heatmap.py +0 -0
  82. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/README.rst +0 -0
  83. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_arc_diagram.py +0 -0
  84. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_available_plotters.py +0 -0
  85. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_bivariate_dist.py +0 -0
  86. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_mouse_embryo.py +0 -0
  87. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_oil_well.py +0 -0
  88. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_oncoprint.py +0 -0
  89. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_pbmc3k.py +0 -0
  90. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_sc_multiomics.py +0 -0
  91. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Gallery/plot_seqalign.py +0 -0
  92. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/README.rst +0 -0
  93. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_anno_labels.py +0 -0
  94. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_arc.py +0 -0
  95. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_area.py +0 -0
  96. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_bar.py +0 -0
  97. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_box.py +0 -0
  98. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_boxen.py +0 -0
  99. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_center_bar.py +0 -0
  100. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_chunk.py +0 -0
  101. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_color_mesh.py +0 -0
  102. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_colors.py +0 -0
  103. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_fixed_chunk.py +0 -0
  104. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_labels.py +0 -0
  105. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_marker_mesh.py +0 -0
  106. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_numbers.py +0 -0
  107. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_point.py +0 -0
  108. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_seq_logo.py +0 -0
  109. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_sized_mesh.py +0 -0
  110. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_stack_bar.py +0 -0
  111. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_strip.py +0 -0
  112. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_swarm.py +0 -0
  113. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_text_mesh.py +0 -0
  114. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_title.py +0 -0
  115. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/Plotters/plot_violin.py +0 -0
  116. {marsilea-0.3.4 → marsilea-0.3.5}/docs/examples/README.rst +0 -0
  117. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/README.rst +0 -0
  118. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/customization/README.rst +0 -0
  119. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/customization/plot_add_border.py +0 -0
  120. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/customization/plot_get_axes.py +0 -0
  121. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/dendrogram/README.rst +0 -0
  122. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/dendrogram/plot_color_dendrogram.py +0 -0
  123. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/dendrogram/plot_dendrogram_control.py +0 -0
  124. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/layout/README.rst +0 -0
  125. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/layout/plot_adjust_figure_size.py +0 -0
  126. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/layout/plot_labeling.py +0 -0
  127. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/layout/plot_margin.py +0 -0
  128. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/legends/README.rst +0 -0
  129. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/legends/plot_disable_legend.py +0 -0
  130. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/legends/plot_legends.py +0 -0
  131. {marsilea-0.3.4 → marsilea-0.3.5}/docs/how_to/save/README.rst +0 -0
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  135. {marsilea-0.3.4 → marsilea-0.3.5}/docs/make.bat +0 -0
  136. {marsilea-0.3.4 → marsilea-0.3.5}/docs/requirements.txt +0 -0
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  141. {marsilea-0.3.4 → marsilea-0.3.5}/docs/source/conf.py +0 -0
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  155. {marsilea-0.3.4 → marsilea-0.3.5}/docs/source/tutorial/upset.rst +0 -0
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  259. {marsilea-0.3.4 → marsilea-0.3.5}/tests/test_mesh.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: marsilea
3
- Version: 0.3.4
3
+ Version: 0.3.5
4
4
  Summary: Create x-layout visualization
5
5
  Author: Zhihang Zheng
6
6
  Author-email: Mr-Milk <yzheng@cemm.at>
@@ -32,7 +32,7 @@ us.highlight_subsets(min_cardinality=48, facecolor="#D0104C",
32
32
  us.highlight_subsets(min_cardinality=32, edgecolor="green", edgewidth=1.5,
33
33
  label="Larger than 32")
34
34
  us.add_items_attr("left", "Revenue (Millions)", "strip", pad=.2, size=.5,
35
- plot_kws=dict(palette="dark:#24936E", size=1.2, label="Revenue\n(Millions)"))
35
+ plot_kws=dict(color="#24936E", size=1.2, label="Revenue\n(Millions)"))
36
36
  us.add_items_attr("right", "Rating", "box",
37
37
  pad=.2,
38
38
  plot_kws=dict(color="orange", linewidth=1, fliersize=1))
@@ -1,6 +1,6 @@
1
1
  """Create x-layout visualization"""
2
2
 
3
- __version__ = "0.3.4"
3
+ __version__ = "0.3.5"
4
4
 
5
5
  import marsilea.plotter as plotter
6
6
  from ._deform import Deformation
@@ -80,7 +80,7 @@ class LegendMaker:
80
80
  """
81
81
  if name is None:
82
82
  name = str(uuid4())
83
- self._user_legends[name] = legend
83
+ self._user_legends[name] = [legend]
84
84
 
85
85
  def add_legends(
86
86
  self,
@@ -2,7 +2,7 @@ import pandas as pd
2
2
  import seaborn
3
3
  from legendkit import CatLegend
4
4
  from seaborn import color_palette
5
- from typing import Mapping
5
+ from typing import Mapping, Sequence
6
6
 
7
7
  from .base import StatsBase
8
8
  from ..utils import ECHARTS16
@@ -51,6 +51,8 @@ class _SeabornBase(StatsBase):
51
51
  # kwargs['palette'] = "dark:C0"
52
52
  if palette is not None:
53
53
  kwargs["palette"] = palette
54
+ if isinstance(palette, Sequence):
55
+ self.set_params({"palette": palette})
54
56
 
55
57
  kwargs.pop("x", None)
56
58
  kwargs.pop("y", None)
@@ -80,6 +82,7 @@ class _SeabornBase(StatsBase):
80
82
  ax = spec.ax
81
83
  data = spec.data
82
84
  gp = spec.group_params
85
+
83
86
  if gp is None:
84
87
  gp = {}
85
88
  x, y = "var", "value"
@@ -106,6 +109,9 @@ class _SeabornBase(StatsBase):
106
109
  x, y = y, x
107
110
  self.kws["x"] = x
108
111
  self.kws["y"] = y
112
+ if spec.params is not None:
113
+ palette = [p.get("palette", "C0") for p in spec.params]
114
+ self.kws["palette"] = palette
109
115
  options = {**self.kws, **gp}
110
116
  if options.get("palette") is not None:
111
117
  options["hue"] = "var"
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