marEx 4.0.3__tar.gz → 4.0.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (59) hide show
  1. {marex-4.0.3 → marex-4.0.4}/PKG-INFO +1 -1
  2. {marex-4.0.3 → marex-4.0.4}/marEx/detect.py +4 -1
  3. {marex-4.0.3 → marex-4.0.4}/marEx.egg-info/PKG-INFO +1 -1
  4. {marex-4.0.3 → marex-4.0.4}/.codecov.yml +0 -0
  5. {marex-4.0.3 → marex-4.0.4}/.github/workflows/README.md +0 -0
  6. {marex-4.0.3 → marex-4.0.4}/.github/workflows/ci.yml +0 -0
  7. {marex-4.0.3 → marex-4.0.4}/.github/workflows/release.yml +0 -0
  8. {marex-4.0.3 → marex-4.0.4}/.github/workflows/validate.py +0 -0
  9. {marex-4.0.3 → marex-4.0.4}/.readthedocs.yaml +0 -0
  10. {marex-4.0.3 → marex-4.0.4}/CITATION.cff +0 -0
  11. {marex-4.0.3 → marex-4.0.4}/CONTRIBUTING.md +0 -0
  12. {marex-4.0.3 → marex-4.0.4}/MANIFEST.in +0 -0
  13. {marex-4.0.3 → marex-4.0.4}/README.md +0 -0
  14. {marex-4.0.3 → marex-4.0.4}/examples/batch jobs/run_detect.py +0 -0
  15. {marex-4.0.3 → marex-4.0.4}/examples/batch jobs/run_track.py +0 -0
  16. {marex-4.0.3 → marex-4.0.4}/examples/batch jobs/submit_track.sh +0 -0
  17. {marex-4.0.3 → marex-4.0.4}/examples/gridded data/01_preprocess_extremes.ipynb +0 -0
  18. {marex-4.0.3 → marex-4.0.4}/examples/gridded data/02_id_track_events.ipynb +0 -0
  19. {marex-4.0.3 → marex-4.0.4}/examples/gridded data/03_visualise_events.ipynb +0 -0
  20. {marex-4.0.3 → marex-4.0.4}/examples/regional data/01_preprocess_extremes.ipynb +0 -0
  21. {marex-4.0.3 → marex-4.0.4}/examples/regional data/02_id_track_events.ipynb +0 -0
  22. {marex-4.0.3 → marex-4.0.4}/examples/regional data/03_visualise_events.ipynb +0 -0
  23. {marex-4.0.3 → marex-4.0.4}/examples/unstructured data/01_preprocess_extremes.ipynb +0 -0
  24. {marex-4.0.3 → marex-4.0.4}/examples/unstructured data/02_id_track_events.ipynb +0 -0
  25. {marex-4.0.3 → marex-4.0.4}/examples/unstructured data/03_visualise_events.ipynb +0 -0
  26. {marex-4.0.3 → marex-4.0.4}/marEx/__init__.py +0 -0
  27. {marex-4.0.3 → marex-4.0.4}/marEx/_coverage_init.py +0 -0
  28. {marex-4.0.3 → marex-4.0.4}/marEx/_dependencies.py +0 -0
  29. {marex-4.0.3 → marex-4.0.4}/marEx/exceptions.py +0 -0
  30. {marex-4.0.3 → marex-4.0.4}/marEx/helper.py +0 -0
  31. {marex-4.0.3 → marex-4.0.4}/marEx/logging_config.py +0 -0
  32. {marex-4.0.3 → marex-4.0.4}/marEx/plotX/__init__.py +0 -0
  33. {marex-4.0.3 → marex-4.0.4}/marEx/plotX/base.py +0 -0
  34. {marex-4.0.3 → marex-4.0.4}/marEx/plotX/gridded.py +0 -0
  35. {marex-4.0.3 → marex-4.0.4}/marEx/plotX/unstructured.py +0 -0
  36. {marex-4.0.3 → marex-4.0.4}/marEx/track.py +0 -0
  37. {marex-4.0.3 → marex-4.0.4}/marEx.egg-info/SOURCES.txt +0 -0
  38. {marex-4.0.3 → marex-4.0.4}/marEx.egg-info/dependency_links.txt +0 -0
  39. {marex-4.0.3 → marex-4.0.4}/marEx.egg-info/requires.txt +0 -0
  40. {marex-4.0.3 → marex-4.0.4}/marEx.egg-info/top_level.txt +0 -0
  41. {marex-4.0.3 → marex-4.0.4}/pyproject.toml +0 -0
  42. {marex-4.0.3 → marex-4.0.4}/setup.cfg +0 -0
  43. {marex-4.0.3 → marex-4.0.4}/tests/__init__.py +0 -0
  44. {marex-4.0.3 → marex-4.0.4}/tests/conftest.py +0 -0
  45. {marex-4.0.3 → marex-4.0.4}/tests/coverage_config.py +0 -0
  46. {marex-4.0.3 → marex-4.0.4}/tests/make_test_data.ipynb +0 -0
  47. {marex-4.0.3 → marex-4.0.4}/tests/test_detect_detrending.py +0 -0
  48. {marex-4.0.3 → marex-4.0.4}/tests/test_detect_helpers.py +0 -0
  49. {marex-4.0.3 → marex-4.0.4}/tests/test_error_handling.py +0 -0
  50. {marex-4.0.3 → marex-4.0.4}/tests/test_exceptions.py +0 -0
  51. {marex-4.0.3 → marex-4.0.4}/tests/test_gridded_preprocessing.py +0 -0
  52. {marex-4.0.3 → marex-4.0.4}/tests/test_gridded_tracking.py +0 -0
  53. {marex-4.0.3 → marex-4.0.4}/tests/test_integration.py +0 -0
  54. {marex-4.0.3 → marex-4.0.4}/tests/test_logging_system.py +0 -0
  55. {marex-4.0.3 → marex-4.0.4}/tests/test_plotx.py +0 -0
  56. {marex-4.0.3 → marex-4.0.4}/tests/test_track_edge_cases.py +0 -0
  57. {marex-4.0.3 → marex-4.0.4}/tests/test_track_helpers.py +0 -0
  58. {marex-4.0.3 → marex-4.0.4}/tests/test_unstructured_preprocessing.py +0 -0
  59. {marex-4.0.3 → marex-4.0.4}/tests/test_unstructured_tracking.py +0 -0
{marex-4.0.3 → marex-4.0.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: marEx
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- Version: 4.0.3
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+ Version: 4.0.4
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  Summary: Marine Extremes Detection and Tracking
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  Author-email: Aaron Wienkers <aaron@wienkers.com>
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  Project-URL: Homepage, https://github.com/wienkers/marEx
{marex-4.0.3 → marex-4.0.4}/marEx/detect.py RENAMED
@@ -622,7 +622,9 @@ def preprocess_data(
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  ds = ds.isel({dimensions["time"]: time_sel})
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  # Break graph after expensive anomaly computation
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- if use_temp_checkpoints:
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+ # Only needed for shifting baseline, because this is the most expensive method
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+ # Other methods result in an odd chunking structure that cannot be checkpointed easily
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+ if use_temp_checkpoints and method_anomaly == "shifting_baseline":
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  logger.debug("Checkpointing anomaly dataset to break graph dependencies")
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  ds = checkpoint_to_zarr(ds, name="anomalies", timedim=dimensions["time"])
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@@ -789,6 +791,7 @@ def preprocess_data(
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  show_progress=True,
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  ):
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  ds = ds.persist(optimize_graph=True)
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+ ds["thresholds"] = ds.thresholds.compute() # Patch for a dask-Zarr bug that has problems saving this data array...
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  ds["mask"] = ds.mask.compute()
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  ds["dat_anomaly"] = fix_dask_tuple_array(ds.dat_anomaly)
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{marex-4.0.3 → marex-4.0.4}/marEx.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: marEx
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- Version: 4.0.3
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+ Version: 4.0.4
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  Summary: Marine Extremes Detection and Tracking
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  Author-email: Aaron Wienkers <aaron@wienkers.com>
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  Project-URL: Homepage, https://github.com/wienkers/marEx
{marex-4.0.3 → marex-4.0.4}/.codecov.yml RENAMED
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{marex-4.0.3 → marex-4.0.4}/.github/workflows/README.md RENAMED
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{marex-4.0.3 → marex-4.0.4}/.github/workflows/ci.yml RENAMED
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{marex-4.0.3 → marex-4.0.4}/.readthedocs.yaml RENAMED
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{marex-4.0.3 → marex-4.0.4}/CITATION.cff RENAMED
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{marex-4.0.3 → marex-4.0.4}/CONTRIBUTING.md RENAMED
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{marex-4.0.3 → marex-4.0.4}/MANIFEST.in RENAMED
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{marex-4.0.3 → marex-4.0.4}/README.md RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/__init__.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/_coverage_init.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/_dependencies.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/exceptions.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/helper.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/logging_config.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/plotX/__init__.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/plotX/base.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/plotX/gridded.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/plotX/unstructured.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx/track.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx.egg-info/SOURCES.txt RENAMED
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{marex-4.0.3 → marex-4.0.4}/marEx.egg-info/requires.txt RENAMED
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{marex-4.0.3 → marex-4.0.4}/pyproject.toml RENAMED
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{marex-4.0.3 → marex-4.0.4}/setup.cfg RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/__init__.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/conftest.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/coverage_config.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/make_test_data.ipynb RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/test_exceptions.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/test_integration.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/test_plotx.py RENAMED
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{marex-4.0.3 → marex-4.0.4}/tests/test_track_helpers.py RENAMED
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