manuwright 1.10.6__tar.gz

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Files changed (145) hide show
  1. manuwright-1.10.6/.agents/plugins/marketplace.json +12 -0
  2. manuwright-1.10.6/.claude-plugin/marketplace.json +9 -0
  3. manuwright-1.10.6/.claude-plugin/plugin.json +8 -0
  4. manuwright-1.10.6/.codex-plugin/plugin.json +10 -0
  5. manuwright-1.10.6/.gitignore +78 -0
  6. manuwright-1.10.6/LICENSE +402 -0
  7. manuwright-1.10.6/PKG-INFO +230 -0
  8. manuwright-1.10.6/README.md +216 -0
  9. manuwright-1.10.6/Style/style_guide.md +190 -0
  10. manuwright-1.10.6/Style/terminology.md +305 -0
  11. manuwright-1.10.6/THIRD_PARTY_NOTICES.md +53 -0
  12. manuwright-1.10.6/WORKFLOW.md +462 -0
  13. manuwright-1.10.6/docs/academic_style/abstract.md +35 -0
  14. manuwright-1.10.6/docs/academic_style/conclusion.md +21 -0
  15. manuwright-1.10.6/docs/academic_style/core.md +33 -0
  16. manuwright-1.10.6/docs/academic_style/discussion.md +56 -0
  17. manuwright-1.10.6/docs/academic_style/introduction.md +48 -0
  18. manuwright-1.10.6/docs/academic_style/methods.md +52 -0
  19. manuwright-1.10.6/docs/academic_style/reference_profile.json +825 -0
  20. manuwright-1.10.6/docs/academic_style/results.md +45 -0
  21. manuwright-1.10.6/docs/academic_style/title.md +17 -0
  22. manuwright-1.10.6/docs/agent_bootstrap.md +14 -0
  23. manuwright-1.10.6/docs/agent_bootstrap.sha256 +10 -0
  24. manuwright-1.10.6/docs/ai_usage.example.json +30 -0
  25. manuwright-1.10.6/docs/checklist_guide.md +339 -0
  26. manuwright-1.10.6/docs/citation_assist_protocol.md +94 -0
  27. manuwright-1.10.6/docs/critical_review_protocol.md +114 -0
  28. manuwright-1.10.6/docs/debate_protocol.md +76 -0
  29. manuwright-1.10.6/docs/distribution_plan.md +133 -0
  30. manuwright-1.10.6/docs/docx_guide.md +357 -0
  31. manuwright-1.10.6/docs/draft_plan_template.md +240 -0
  32. manuwright-1.10.6/docs/drafting_protocol.md +151 -0
  33. manuwright-1.10.6/docs/evidence_guide.md +276 -0
  34. manuwright-1.10.6/docs/expert_roles.md +384 -0
  35. manuwright-1.10.6/docs/figure_guide.md +334 -0
  36. manuwright-1.10.6/docs/guide/overview.ja.md +332 -0
  37. manuwright-1.10.6/docs/guide/overview.ko.md +361 -0
  38. manuwright-1.10.6/docs/guide/overview.md +367 -0
  39. manuwright-1.10.6/docs/guide/overview.zh.md +338 -0
  40. manuwright-1.10.6/docs/harness_guide.md +189 -0
  41. manuwright-1.10.6/docs/images/manual/01_pipeline_overview.png +0 -0
  42. manuwright-1.10.6/docs/images/manual/04_plan_first_gate.png +0 -0
  43. manuwright-1.10.6/docs/images/manual/05_numbers_catches_wrong_value.png +0 -0
  44. manuwright-1.10.6/docs/images/manual/10_codex_methods.png +0 -0
  45. manuwright-1.10.6/docs/images/manual/11_agy_results.png +0 -0
  46. manuwright-1.10.6/docs/images/manual/13_opencode_discussion.png +0 -0
  47. manuwright-1.10.6/docs/images/manual/20_verify_draft_pass.png +0 -0
  48. manuwright-1.10.6/docs/images/manual/21_verify_submission_blocked.png +0 -0
  49. manuwright-1.10.6/docs/images/manual/22_stale_after_edit.png +0 -0
  50. manuwright-1.10.6/docs/images/manual/23_submission_pass_build.png +0 -0
  51. manuwright-1.10.6/docs/images/manual/30_codex_semantic_review.png +0 -0
  52. manuwright-1.10.6/docs/images/manual/31_codex_semantic_review_round2.png +0 -0
  53. manuwright-1.10.6/docs/images/manual/32_codex_semantic_review_round6_pass.png +0 -0
  54. manuwright-1.10.6/docs/images/manual/40_obsidian_status.png +0 -0
  55. manuwright-1.10.6/docs/images/manual/41_obsidian_connect.png +0 -0
  56. manuwright-1.10.6/docs/images/manual/42_obsidian_install.png +0 -0
  57. manuwright-1.10.6/docs/images/manual/43_obsidian_import_evidence.png +0 -0
  58. manuwright-1.10.6/docs/images/manual/44_obsidian_mcp_agents.png +0 -0
  59. manuwright-1.10.6/docs/images/manual/45_multi_reviewer_run.png +0 -0
  60. manuwright-1.10.6/docs/images/manual/50_setup.png +0 -0
  61. manuwright-1.10.6/docs/images/manual/51_journal_references.png +0 -0
  62. manuwright-1.10.6/docs/images/manual/60_section_card.png +0 -0
  63. manuwright-1.10.6/docs/images/manual/61_prose_check.png +0 -0
  64. manuwright-1.10.6/docs/images/manual/62_strict_block.png +0 -0
  65. manuwright-1.10.6/docs/images/manual/63_claim_strength.png +0 -0
  66. manuwright-1.10.6/docs/images/manual/64_blind_review.png +0 -0
  67. manuwright-1.10.6/docs/images/manual/65_revision_checks.png +0 -0
  68. manuwright-1.10.6/docs/manual.ko.md +621 -0
  69. manuwright-1.10.6/docs/manual.md +623 -0
  70. manuwright-1.10.6/docs/medical_kag_protocol.md +133 -0
  71. manuwright-1.10.6/docs/migration_guide.md +20 -0
  72. manuwright-1.10.6/docs/project.example.json +39 -0
  73. manuwright-1.10.6/docs/qc_guide.md +713 -0
  74. manuwright-1.10.6/docs/response_letter_template.md +79 -0
  75. manuwright-1.10.6/docs/revision_guide.md +362 -0
  76. manuwright-1.10.6/docs/section_templates.md +201 -0
  77. manuwright-1.10.6/docs/statistical_analysis_guide.md +794 -0
  78. manuwright-1.10.6/docs/style_spec_template.md +56 -0
  79. manuwright-1.10.6/docs/style_transform_protocol.md +73 -0
  80. manuwright-1.10.6/docs/verification_protocol.md +216 -0
  81. manuwright-1.10.6/docs/verifier_prompt_templates.md +301 -0
  82. manuwright-1.10.6/docs/workflow_reference.md +334 -0
  83. manuwright-1.10.6/docs/writing_guide.md +725 -0
  84. manuwright-1.10.6/gemini-extension.json +6 -0
  85. manuwright-1.10.6/harness/__init__.py +2 -0
  86. manuwright-1.10.6/harness/__main__.py +176 -0
  87. manuwright-1.10.6/harness/build.py +279 -0
  88. manuwright-1.10.6/harness/project.py +441 -0
  89. manuwright-1.10.6/harness/results.py +79 -0
  90. manuwright-1.10.6/harness/tracked.py +137 -0
  91. manuwright-1.10.6/hooks/hooks.json +67 -0
  92. manuwright-1.10.6/manuwright/__init__.py +1 -0
  93. manuwright-1.10.6/manuwright/analysis_env.py +104 -0
  94. manuwright-1.10.6/manuwright/cli.py +249 -0
  95. manuwright-1.10.6/manuwright/library.py +324 -0
  96. manuwright-1.10.6/manuwright/lifecycle.py +1446 -0
  97. manuwright-1.10.6/manuwright/models.py +489 -0
  98. manuwright-1.10.6/manuwright/obsidian.py +474 -0
  99. manuwright-1.10.6/plugin.json +5 -0
  100. manuwright-1.10.6/profile/example_authors.md +155 -0
  101. manuwright-1.10.6/pyproject.toml +55 -0
  102. manuwright-1.10.6/review/gates/_TEMPLATE.GATE.md +138 -0
  103. manuwright-1.10.6/scripts/academic_style.py +1112 -0
  104. manuwright-1.10.6/scripts/ai_disclosure.py +244 -0
  105. manuwright-1.10.6/scripts/bind_results.py +323 -0
  106. manuwright-1.10.6/scripts/blind_review.py +219 -0
  107. manuwright-1.10.6/scripts/check_abbreviations.py +215 -0
  108. manuwright-1.10.6/scripts/check_abstract.py +169 -0
  109. manuwright-1.10.6/scripts/check_citations.py +349 -0
  110. manuwright-1.10.6/scripts/check_claim_strength.py +186 -0
  111. manuwright-1.10.6/scripts/check_coverage.py +289 -0
  112. manuwright-1.10.6/scripts/check_crossrefs.py +278 -0
  113. manuwright-1.10.6/scripts/check_gate.py +673 -0
  114. manuwright-1.10.6/scripts/check_numbers.py +459 -0
  115. manuwright-1.10.6/scripts/check_response_coverage.py +264 -0
  116. manuwright-1.10.6/scripts/check_revision_claims.py +472 -0
  117. manuwright-1.10.6/scripts/check_style.py +185 -0
  118. manuwright-1.10.6/scripts/compile_response_docx.py +233 -0
  119. manuwright-1.10.6/scripts/critical_models.txt +10 -0
  120. manuwright-1.10.6/scripts/critical_prompts/editor.txt +20 -0
  121. manuwright-1.10.6/scripts/critical_prompts/journal.txt +23 -0
  122. manuwright-1.10.6/scripts/critical_prompts/manuscript.txt +20 -0
  123. manuwright-1.10.6/scripts/critical_prompts/response.txt +14 -0
  124. manuwright-1.10.6/scripts/critical_review.py +334 -0
  125. manuwright-1.10.6/scripts/evidence_table.py +87 -0
  126. manuwright-1.10.6/scripts/extract_claims.py +96 -0
  127. manuwright-1.10.6/scripts/format_references.py +323 -0
  128. manuwright-1.10.6/scripts/hooks/enforce_gates.py +243 -0
  129. manuwright-1.10.6/scripts/hooks/lint_on_edit.py +206 -0
  130. manuwright-1.10.6/scripts/hooks/run.sh +10 -0
  131. manuwright-1.10.6/scripts/hooks/session_contract.py +119 -0
  132. manuwright-1.10.6/scripts/hooks/style_intent.py +311 -0
  133. manuwright-1.10.6/scripts/hooks/subagent_style.py +45 -0
  134. manuwright-1.10.6/scripts/journal_fit.py +565 -0
  135. manuwright-1.10.6/scripts/journal_list.py +648 -0
  136. manuwright-1.10.6/scripts/journal_styles.py +172 -0
  137. manuwright-1.10.6/scripts/library_sync.py +419 -0
  138. manuwright-1.10.6/scripts/lint_manuscript.py +331 -0
  139. manuwright-1.10.6/scripts/make_figure.py +492 -0
  140. manuwright-1.10.6/scripts/plan_validation.py +91 -0
  141. manuwright-1.10.6/scripts/search_pubmed.py +588 -0
  142. manuwright-1.10.6/scripts/track_changes.py +61 -0
  143. manuwright-1.10.6/scripts/verify_all.py +106 -0
  144. manuwright-1.10.6/skills/manuwright/SKILL.md +39 -0
  145. manuwright-1.10.6/skills/manuwright-verify/SKILL.md +14 -0
@@ -0,0 +1,12 @@
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+ {
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+ "name": "manuwright",
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+ "interface": { "displayName": "ManuWright" },
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+ "plugins": [
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+ {
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+ "name": "manuwright",
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+ "source": { "source": "local", "path": "./" },
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+ "policy": { "installation": "AVAILABLE", "authentication": "ON_INSTALL" },
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+ "category": "Productivity"
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+ }
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+ ]
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+ }
@@ -0,0 +1,9 @@
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+ {
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+ "$schema": "https://anthropic.com/claude-code/marketplace.schema.json",
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+ "name": "manuwright",
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+ "description": "manuwright manuscript engine adapters",
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+ "owner": { "name": "Sang-Min Park" },
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+ "plugins": [
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+ { "name": "manuwright", "description": "Evidence-bound medical manuscript workflow", "source": "./", "category": "productivity" }
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+ ]
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+ }
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+ {
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+ "name": "manuwright",
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+ "version": "1.10.6",
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+ "description": "Evidence-bound medical manuscript workflow: plan-first gates, citation/number grounding, verification profiles. Requires the manuwright CLI of the same version.",
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+ "author": { "name": "Sang-Min Park" },
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+ "homepage": "https://github.com/grotyx/Academic_writing_c_claudecode",
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+ "hooks": "./hooks/hooks.json"
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+ }
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+ {
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+ "name": "manuwright",
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+ "version": "1.10.6",
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+ "description": "Evidence-bound medical manuscript workflow. Requires the manuwright CLI of the same version.",
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+ "author": { "name": "Sang-Min Park" },
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+ "homepage": "https://github.com/grotyx/Academic_writing_c_claudecode",
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+ "skills": "./skills/",
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+ "hooks": "./hooks/hooks.json",
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+ "interface": { "displayName": "ManuWright", "shortDescription": "Medical manuscript workflow gates", "category": "Productivity", "capabilities": ["Instructions", "Lifecycle hooks"] }
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+ }
@@ -0,0 +1,78 @@
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+ # OS generated files
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+ .DS_Store
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+
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+ # Local settings
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+ .claude/settings.local.json
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+ .vscode/
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+
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+ # Presentation files (not part of manuscript workflow)
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+ # Promo videos, thumbnails and upload text (large, local only)
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+ /promo/
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+ presentation/
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+
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+ # Personal profile (author info, contacts, funding).
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+ # Use profile/* (not profile/) so the example_ templates below can be re-included:
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+ # git cannot un-ignore a file whose parent directory itself is excluded.
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+ profile/*
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+ !profile/example_authors.md
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+ !profile/example_journals.md
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+
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+ # Superpowers planning/spec notes — internal, not for public release
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+ docs/superpowers/
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+
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+ # Local DOCX style references may contain private reviewer-response text
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+ Author_response_220803_Final.docx
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+
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+ # Root-level generated submission artifacts belong under output/ or output/revision/
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+ /manuscript_*.docx
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+ /response_letter_*.docx
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+ /title_page_*.docx
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+ /table_*.docx
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+
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+ # Reference PDFs — copyright-protected, do not commit
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+ knowledge/pdf/
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+
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+ # Style anchor PDFs — copyright-protected, local only
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+ Style/PDF/**/*.pdf
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+ Style/PDF/**/*.PDF
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+
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+ # Learned style profiles hold measured numbers and model paragraphs quoted from the learned papers
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+ # (copyright-protected, local only); pending rules hold wording from the author's drafts.
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+ Style/profile/
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+ **/Style/profile/
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+ Style/pending_style_rules.md
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+
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+ # Style anchor markdown files may contain private/local analysis context
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+ Style/own/*.md
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+ !Style/own/example_*.md
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+ Style/landmark/*.md
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+ Style/target_journal/*.md
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+ !Style/style_guide.md
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+ !Style/terminology.md
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+
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+ # Python caches
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+ __pycache__/
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+ *.pyc
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+ .pytest_cache/
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+
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+ # Local archives/backups (not part of the workflow)
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+ *.zip
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+
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+ # Private project work and credentials (already tracked templates are unaffected)
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+ .env
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+ .env.*
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+ !.env.example
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+ .venv/
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+ /results/
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+ /output/
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+ /review/runs/
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+ /review/packets/
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+ /review/state.json
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+ /review/*.json
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+ /review/*.jsonl
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+ /data/*.csv
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+ /data/*.xlsx
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+ /data/*.xls
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+ /data/*.approval.json
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+ /drafts/*.approval.json
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+ /project.json
@@ -0,0 +1,402 @@
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+ ManuWright
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+ Copyright (c) 2026 Sang-Min Park, Seoul National University Bundang Hospital.
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+ Licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0),
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+ reproduced below. https://creativecommons.org/licenses/by/4.0/
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+ Third-party material is listed in THIRD_PARTY_NOTICES.md.
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+
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+ Attribution 4.0 International
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+
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