mantis-rtm 0.1.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- mantis_rtm-0.1.1/.github/workflows/publish-pypi.yml +47 -0
- mantis_rtm-0.1.1/.github/workflows/tests.yml +35 -0
- mantis_rtm-0.1.1/.gitignore +35 -0
- mantis_rtm-0.1.1/.python-version +1 -0
- mantis_rtm-0.1.1/LICENSE +661 -0
- mantis_rtm-0.1.1/PKG-INFO +175 -0
- mantis_rtm-0.1.1/README.md +134 -0
- mantis_rtm-0.1.1/changelog.md +55 -0
- mantis_rtm-0.1.1/docs/tutorial.md +707 -0
- mantis_rtm-0.1.1/docs/tutorial.org +651 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/00readme.md +1 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/fes_reactions.py +140 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/kinetic_constants_fast.py +108 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/kinetic_constants_slow.py +108 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/plot_layout.py +175 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/run_velde_fast.py +75 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/run_velde_slow.py +73 -0
- mantis_rtm-0.1.1/examples/velde_et_al_2016/species.py +221 -0
- mantis_rtm-0.1.1/pyproject.toml +148 -0
- mantis_rtm-0.1.1/pyrightconfig.json +13 -0
- mantis_rtm-0.1.1/requirements.txt +6 -0
- mantis_rtm-0.1.1/setup.cfg +4 -0
- mantis_rtm-0.1.1/src/.vscode/settings.json +4 -0
- mantis_rtm-0.1.1/src/mantis/__init__.py +5 -0
- mantis_rtm-0.1.1/src/mantis/_version.py +24 -0
- mantis_rtm-0.1.1/src/mantis/diff_lib.py +1983 -0
- mantis_rtm-0.1.1/src/mantis/generate_equation_system.py +1988 -0
- mantis_rtm-0.1.1/src/mantis/live_plot_lib.py +623 -0
- mantis_rtm-0.1.1/src/mantis/model.py +965 -0
- mantis_rtm-0.1.1/src/mantis/monitor_plots.py +171 -0
- mantis_rtm-0.1.1/src/mantis/monolithic_solver.py +920 -0
- mantis_rtm-0.1.1/src/mantis/parallel_video.py +523 -0
- mantis_rtm-0.1.1/src/mantis/plot_data_new.py +1363 -0
- mantis_rtm-0.1.1/src/mantis/solvers_numba.py +219 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/PKG-INFO +175 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/SOURCES.txt +56 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/dependency_links.txt +1 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/entry_points.txt +6 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/requires.txt +19 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/scm_file_list.json +51 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/scm_version.json +8 -0
- mantis_rtm-0.1.1/src/mantis_rtm.egg-info/top_level.txt +1 -0
- mantis_rtm-0.1.1/tests/test_diagenetic_model.py +65 -0
- mantis_rtm-0.1.1/tests/test_direct_solver_numpy.py +119 -0
- mantis_rtm-0.1.1/tests/test_equivalence.py +224 -0
- mantis_rtm-0.1.1/tests/test_fes_flux_limited.py +199 -0
- mantis_rtm-0.1.1/tests/test_fes_predictor_corrector.py +165 -0
- mantis_rtm-0.1.1/tests/test_fes_smooth_transition.py +168 -0
- mantis_rtm-0.1.1/tests/test_fes_symmetrical_picard.py +408 -0
- mantis_rtm-0.1.1/tests/test_generate_equation_system.py +366 -0
- mantis_rtm-0.1.1/tests/test_log_compression.py +159 -0
- mantis_rtm-0.1.1/tests/test_monod_linearization.py +220 -0
- mantis_rtm-0.1.1/tests/test_parallel_video.py +156 -0
- mantis_rtm-0.1.1/tests/test_plot_data_options.py +246 -0
- mantis_rtm-0.1.1/tests/test_reactant_coexistence.py +74 -0
- mantis_rtm-0.1.1/tests/test_s0_disproportionation.py +145 -0
- mantis_rtm-0.1.1/tests/test_solvers_numba.py +125 -0
- mantis_rtm-0.1.1/tests/test_video_queue_and_logging.py +156 -0
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runs-on: ubuntu-latest
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environment:
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name: pypi
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url: https://pypi.org/p/mantis-rtm
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permissions:
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contents: read # Required to checkout repository
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python -m pip install build twine
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uses: pypa/gh-action-pypi-publish@release/v1
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# add a repository secret named PYPI_API_TOKEN and uncomment the line below:
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name: Tests
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push:
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test:
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runs-on: ubuntu-latest
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strategy:
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fail-fast: false
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with:
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# Python-generated files
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__pycache__/
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*.py[oc]
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build/
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ltximg/
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notes/
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dist/
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nbk/
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wheels/
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src/**/_version.py
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_version.py
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TAGS
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*.pdf
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CLAUDE.md
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# Virtual environments
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.venv
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env/
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venv/
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