lstosa 0.11.2__tar.gz → 0.11.3__tar.gz

{lstosa-0.11.2 → lstosa-0.11.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lstosa
-Version: 0.11.2
+Version: 0.11.3
 Summary: Onsite analysis pipeline for the CTA LST-1
 Author: María Láinez, José Enrique Ruiz, Lab Saha, Andrés Baquero, José Luis Contreras, Maximilian Linhoff
 Author-email: Daniel Morcuende <dmorcuen@ucm.es>

lstosa-0.11.3/crontab/crontab.txt

@@ -0,0 +1,83 @@
+SHELL=/usr/bin/bash
+BASH_ENV="/local/home/lstanalyzer/.bashrc"
+CRON_TZ=UTC
+# Update astropy auxiliary data (e.g. IERS) every week
+0 0 * * SUN source /fefs/aswg/lstosa/utils/osa-conda; python /fefs/aswg/data/aux/astropy/get_iers_data.py  > /dev/null 2>&1
+#
+# lstosa jobs
+#
+# [COPY OBS OVERVIEW] Copy observations overview and daily camera checks to lst1 datacheck webserver
+#
+00 09 * * * /usr/bin/bash /fefs/aswg/lstosa/misc/copy_camera_daily_check_to_www.sh >/dev/null 2>&1
+#
+# [RUN SUMMARY] Produce the run summary file at the end of the observations to make sure it contains all the runs taken
+#
+50 06 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; lstchain_create_run_summary -d $obsdate -o /fefs/onsite/data/lst-pipe/LSTN-01/monitoring/RunSummary --r0-path=/fefs/onsite/data/R0/LSTN-01/lst-arraydaq/events --overwrite > /dev/null 2>&1
+#
+# [MERGED RUN SUMMARY] Produce the merged run summary file containing all the runs taken by the LST.
+#                      This only appends the runs of the given date.
+#
+55 06 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; source /fefs/aswg/lstosa/utils/osa-conda; lstchain_merge_run_summaries -d $obsdate /fefs/onsite/data/lst-pipe/LSTN-01/OSA/Catalog/merged_RunSummary.ecsv --monitoring-path=/fefs/onsite/data/lst-pipe/LSTN-01/monitoring > /dev/null 2>&1
+#
+# [GAIN SELECTION]
+#
+00 07-15 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; gain_selection --no-queue-check -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate -s 6 >> /fefs/onsite/data/lst-pipe/LSTN-01/OSA/GainSel_log/${obsdate}_LST1.log 2>&1
+#
+# [GAIN SELECTION CHECK]
+#
+20,50 08-16 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; gain_selection --check -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate >> /fefs/onsite/data/lst-pipe/LSTN-01/OSA/GainSel_log/${obsdate}_check_LST1.log 2>&1
+#
+# [SIMULATED SEQUENCER] Launch sequencer once in the morning simulated. It also produces the run summary file if not found.
+#
+05 09 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -s -d $obsdate LST1 > /dev/null 2>&1
+#
+# [SEQUENCER 1] Run only up to DL1A
+#
+25,32 08-10 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg --no-dl1ab -d $obsdate LST1 >> /fefs/onsite/data/lst-pipe/LSTN-01/OSA/Sequencer_log/${obsdate}_1_LST1.log 2>&1
+#
+# [SEQUENCER_CATB_TAILCUTS] Runs from DL1A, produces Cat-B calibration and tailcut files
+#
+00,30 08-18 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer_catB_tailcuts -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate LST1 >> /fefs/onsite/data/lst-pipe/LSTN-01/OSA/Sequencer_log/${obsdate}_tailcuts_LST1.log 2>&1
+#
+# [SEQUENCER 2] Finishes the processing producing DL1AB and DL2
+#
+04,40 09-19 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate LST1 >> /fefs/onsite/data/lst-pipe/LSTN-01/OSA/Sequencer_log/${obsdate}_2_LST1.log 2>&1
+#
+# [SEQUENCER WEB] Make sequencer xhtml table and copy it to the lst1 webserver
+#
+*/10 08-22 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer_webmaker -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg > /fefs/onsite/data/lst-pipe/LSTN-01/OSA/Minor_logs/${obsdate}_sequencer-web.log 2>&1; if [ $? = 0 ]; then scp /fefs/onsite/data/lst-pipe/LSTN-01/OSA/SequencerWeb/osa_status_$obsdate.html datacheck:/home/www/html/datacheck/lstosa/sequencer.xhtml; fi > /dev/null 2>&1
+#
+# [GAIN SEL WEB SEQUENCER] Make gain selection xhtml table and copy it to the lst1 webserver
+#
+*/10 07-18 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; gainsel_webmaker -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg > /dev/null 2>&1; if [ $? = 0 ]; then scp /fefs/onsite/data/lst-pipe/LSTN-01/OSA/GainSelWeb/osa_gainsel_status_$obsdate.html datacheck:/home/www/html/datacheck/lstosa/gainsel.xhtml; fi > /dev/null 2>&1
+#
+# [AUTOCLOSER] Launch the closer without forcing it (no -f option).
+#
+25 10-23 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; autocloser -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate LST1 >> /fefs/onsite/data/lst-pipe/LSTN-01/OSA/Autocloser_log/${obsdate}_LST1.log 2>&1
+#
+# [COPY DATACHECK] Copy the available calibration and DL1 datacheck to the LST1 webserver.
+#
+05,20,40 08-23 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; copy_datacheck -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate LST1 > /dev/null 2>&1
+#
+# [SOURCE CATALOG]
+#
+00 11-23 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; update_source_catalog -c /fefs/aswg/lstosa/cfg/sequencer_v0.11.cfg -d $obsdate > /dev/null 2>&1
+#
+# [COPY CUMULATIVE LST-1 OBSERVATION TIME]
+# (added by Daniel Morcuende on 2024-04-05)
+#
+0 18 *  * FRI /usr/bin/bash /fefs/aswg/lstosa/misc/update_cumulative_obs_time.sh >/dev/null 2>&1
+
+
+# Daniel Morcuende (2023-11-08) periodically remove leftover jobs kept in the SLURM as pending after job dependency not satisfied because of failure (Reason in squeue: 'DependencyNeverSatisfied').
+# It does only look for lstosa jobs launched by sequencer with the prefix "LST1_" and also the merging jobs launched by autocloser like "longterm_dl1_datacheck".
+*/30 * * * * /local/home/lstanalyzer/remove_dependency_never_satisfied_jobs.sh > /dev/null 2>&1
+
+
+SHELL=/usr/bin/bash
+BASH_ENV="/local/home/lstanalyzer/.bashrc"
+CRON_TZ=UTC
+#
+# Restart camera processing of calibration runs in realtime in case it was killed for whatever reason
+#
+04 * * * * cd /local/home/lstanalyzer/camera/lst-camera-watchers;./lst1_watcher_restarter

{lstosa-0.11.2 → lstosa-0.11.3}/src/lstosa.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lstosa
-Version: 0.11.2
+Version: 0.11.3
 Summary: Onsite analysis pipeline for the CTA LST-1
 Author: María Láinez, José Enrique Ruiz, Lab Saha, Andrés Baquero, José Luis Contreras, Maximilian Linhoff
 Author-email: Daniel Morcuende <dmorcuen@ucm.es>

{lstosa-0.11.2 → lstosa-0.11.3}/src/lstosa.egg-info/SOURCES.txt

@@ -10,6 +10,7 @@ codemeta.json
 environment-lstcam.yml
 environment.yml
 pyproject.toml
+crontab/crontab-orig.txt
 crontab/crontab.txt
 dev/mysql.py
 docs/Makefile

{lstosa-0.11.2 → lstosa-0.11.3}/src/osa/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.11.2'
-__version_tuple__ = version_tuple = (0, 11, 2)
+__version__ = version = '0.11.3'
+__version_tuple__ = version_tuple = (0, 11, 3)

{lstosa-0.11.2 → lstosa-0.11.3}/src/osa/job.py

@@ -99,7 +99,10 @@ def are_all_jobs_correctly_finished(sequence_list):
     flag = True
     analysis_directory = Path(options.directory)
     for sequence in sequence_list:
-        history_files_list = analysis_directory.rglob(f"*{sequence.run}*.history")
+        if sequence.type != "DATA":
+            continue
+        else:
+            history_files_list = analysis_directory.rglob(f"*{sequence.run}*.history")
         
         if not options.test:
             try: