lstosa 0.10.12__tar.gz → 0.10.13__tar.gz

{lstosa-0.10.12 → lstosa-0.10.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lstosa
-Version: 0.10.12
+Version: 0.10.13
 Summary: Onsite analysis pipeline for the CTA LST-1
 Author: María Láinez, José Enrique Ruiz, Lab Saha, Andrés Baquero, José Luis Contreras, Maximilian Linhoff
 Author-email: Daniel Morcuende <dmorcuen@ucm.es>

lstosa-0.10.13/crontab/crontab.txt

@@ -0,0 +1,101 @@
+#SHELL=/usr/bin/bash
+#BASH_ENV="/local/home/lstanalyzer/.bashrc"
+#
+#-Datacheck jobs
+#
+#30 5 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Data_Check_daily_script_v2.sh
+#05 00-07 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_v7.sh
+#05 00-07 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v7.sh
+#05 00-07 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_v9.sh
+# EDIT Daniel Morcuende 2023-01-30: Running the data check during the night might be causing busy states of the camera during
+# data taking. I modified the cron above to launch only during the day.
+05 08-13 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_v9.sh
+#00 08 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v7.sh
+#00 09 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v7.sh
+00 08 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v9.sh
+#05 12 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v7.sh
+#05 12 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_no_nightsummary_v7.sh
+05 12 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_no_nightsummary_v9.sh
+#05 12 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v9.sh
+#00 14,16,18,20,21,22,23 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_v8.sh
+#00 14,16,18,20,21,22,23 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_close_night_v8.sh
+#00 14,16,18,20,21,22,23 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_v10.sh
+# EDIT Daniel Morcuende 2023-01-30: Running the data check during the night might be causing busy states of the camera during
+# data taking. I modified the cron above to launch only during the day up to 18:00 UTC.
+00 14,16,18 * * * /usr/bin/bash /fefs/onsite/pipeline/data-check/Process_Run_incremental_script_v10.sh
+#40 * * * *  /usr/bin/bash /fefs/onsite/pipeline/data-check/test_cron.sh
+
+
+SHELL=/usr/bin/bash
+BASH_ENV="/local/home/lstanalyzer/.bashrc"
+CRON_TZ=UTC
+# Update astropy auxiliary data (e.g. IERS) every week
+0 0 * * SUN source /fefs/aswg/lstosa/utils/osa-conda; python /fefs/aswg/data/aux/astropy/get_iers_data.py  > /dev/null 2>&1
+#
+# lstosa jobs
+#
+# [COPY OBS OVERVIEW] Copy observations overview and daily camera checks to lst1 datacheck webserver
+#
+00 09 * * * /usr/bin/bash /fefs/aswg/lstosa/misc/copy_camera_daily_check_to_www.sh >/dev/null 2>&1
+#
+# [RUN SUMMARY] Produce the run summary file at the end of the observations to make sure it contains all the runs taken
+#
+05 07 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; lstchain_create_run_summary -d $obsdate --overwrite > /dev/null 2>&1
+#
+# [MERGED RUN SUMMARY] Produce the merged run summary file containing all the runs taken by the LST.
+#                      This only appends the runs of the given date.
+#
+15 07 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; source /fefs/aswg/lstosa/utils/osa-conda; lstchain_merge_run_summaries -d $obsdate /fefs/aswg/data/real/OSA/Catalog/merged_RunSummary.ecsv > /dev/null 2>&1
+#
+# [GAIN SELECTION]
+#
+#50 07 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; export obsdate; conda activate /fefs/aswg/software/conda/envs/osa-dev; gain_selection --no-queue-check -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg -d $obsdate -o /fefs/aswg/data/real/R0G -s 7 >> /fefs/aswg/data/real/OSA/GainSel_log/${obsdate}_LST1.log 2>&1
+#
+# [GAIN SELECTION CHECK]
+#
+#20 08 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; export obsdate; conda activate /fefs/aswg/software/conda/envs/osa-dev; gain_selection --check -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg -d $obsdate -o /fefs/aswg/data/real/R0G -s 7 >> /fefs/aswg/data/real/OSA/GainSel_log/${obsdate}_check_LST1.log 2>&1
+#
+# [SIMULATED SEQUENCER] Launch sequencer once in the morning simulated. It also produces the run summary file if not found.
+#
+10 08 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg -s -d $obsdate LST1 >> /fefs/aswg/data/real/OSA/Sequencer_log/${obsdate}_LST1.log 2>&1
+#
+# [SEQUENCER] Launch sequencer once in the morning
+#
+50 07 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg -d $obsdate --no-gainsel --no-dl2 LST1 > /dev/null 2>&1
+#
+# [WEB SEQUENCER] Make sequencer xhtml table and copy it to the lst1 webserver
+#
+*/15 08-18 * * * obsdate=`date +\%Y\%m\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; sequencer_webmaker -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg; if [ $? = 0 ]; then scp /fefs/aswg/data/real/OSA/SequencerWeb/osa_status_$obsdate.html datacheck:/home/www/html/datacheck/lstosa/sequencer.xhtml; fi > /dev/null 2>&1
+#
+# [AUTOCLOSER] Launch the closer without forcing it (no -f option).
+#
+0 10-18/2 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; autocloser -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg -d $obsdate --no-gainsel --no-dl2 LST1 >> /fefs/aswg/data/real/OSA/Autocloser_log/${obsdate}_LST1.log 2>&1
+#
+# [COPY DATACHECK] Copy the available calibration and DL1 datacheck to the LST1 webserver.
+#
+05,20,40 08-18 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; copy_datacheck -c /fefs/aswg/lstosa/cfg/sequencer_v0.10.cfg -d $obsdate LST1 > /dev/null 2>&1
+#
+# [SOURCE CATALOG]
+#
+00 11-19 * * * obsdate=`date +\%Y-\%m-\%d -d yesterday`; export obsdate; source /fefs/aswg/lstosa/utils/osa-conda; update_source_catalog $obsdate > /dev/null 2>&1
+#
+# [COPY CUMULATIVE LST-1 OBSERVATION TIME]
+# (added by Daniel Morcuende on 2024-04-05)
+#
+0 11 *  * FRI /usr/bin/bash /fefs/aswg/lstosa/misc/update_cumulative_obs_time.sh >/dev/null 2>&1
+
+
+# Daniel Morcuende (2023-11-08) periodically remove leftover jobs kept in the SLURM as pending after job dependency not satisfied because of failure (Reason in squeue: 'DependencyNeverSatisfied').
+# It does only look for lstosa jobs launched by sequencer with the prefix "LST1_" and also the merging jobs launched by autocloser like "longterm_dl1_datacheck".
+*/30 * * * * /local/home/lstanalyzer/remove_dependency_never_satisfied_jobs.sh > /dev/null 2>&1
+
+
+
+
+SHELL=/usr/bin/bash
+BASH_ENV="/local/home/lstanalyzer/.bashrc"
+CRON_TZ=UTC
+#
+# Restart camera processing of calibration runs in realtime in case it was killed for whatever reason
+#
+04 * * * * cd /local/home/lstanalyzer/camera/lst-camera-watchers;./lst1_watcher_restarter

{lstosa-0.10.12 → lstosa-0.10.13}/src/lstosa.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lstosa
-Version: 0.10.12
+Version: 0.10.13
 Summary: Onsite analysis pipeline for the CTA LST-1
 Author: María Láinez, José Enrique Ruiz, Lab Saha, Andrés Baquero, José Luis Contreras, Maximilian Linhoff
 Author-email: Daniel Morcuende <dmorcuen@ucm.es>

{lstosa-0.10.12 → lstosa-0.10.13}/src/lstosa.egg-info/SOURCES.txt

@@ -9,6 +9,7 @@ README.md
 codemeta.json
 environment.yml
 pyproject.toml
+crontab/crontab.txt
 dev/mysql.py
 docs/Makefile
 docs/authors.rst

{lstosa-0.10.12 → lstosa-0.10.13}/src/osa/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.10.12'
-__version_tuple__ = version_tuple = (0, 10, 12)
+__version__ = version = '0.10.13'
+__version_tuple__ = version_tuple = (0, 10, 13)

{lstosa-0.10.12 → lstosa-0.10.13}/src/osa/scripts/gain_selection.py

@@ -208,7 +208,8 @@ def apply_gain_selection(date: str, start: int, end: int, output_basedir: Path =
     log.info(f"Found {len(calib_runs)} NO-DATA runs")
 
     for run in calib_runs:
-        log.info(f"Copying R0 files corresponding to run {run} directly to {output_dir}")
+        run_id = run["run_id"]
+        log.info(f"Copying R0 files corresponding to run {run_id} directly to {output_dir}")
         # Avoid copying files while it is still night time
         wait_for_daytime(start, end)
 

{lstosa-0.10.12 → lstosa-0.10.13}/src/osa/scripts/sequencer_webmaker.py

@@ -55,7 +55,7 @@ def html_content(body: str, date: str) -> str:
     )
 
 
-def get_sequencer_output(date: str, config: str, test=False) -> list:
+def get_sequencer_output(date: str, config: str, test=False, no_gainsel=False) -> list:
     """Call sequencer to get table with the sequencer status report.
 
     Parameters
@@ -82,6 +82,9 @@ def get_sequencer_output(date: str, config: str, test=False) -> list:
         options.tel_id,
     ]
 
+    if no_gainsel:
+        commandargs.insert(1, "--no-gainsel")
+        
     if test:
         commandargs.insert(-1, "-t")
 
@@ -144,7 +147,7 @@ def main():
         sys.exit(1)
 
     # Get the table with the sequencer status report:
-    lines = get_sequencer_output(date, args.config, args.test)
+    lines = get_sequencer_output(date, args.config, test=args.test, no_gainsel=args.no_gainsel)
 
     # Build the html sequencer table that will be place in the body of the HTML file
     matrix = lines_to_matrix(lines)

{lstosa-0.10.12 → lstosa-0.10.13}/src/osa/utils/cliopts.py

@@ -447,6 +447,12 @@ def sequencer_webmaker_argparser():
     parser = ArgumentParser(
         description="Script to make an xhtml from LSTOSA sequencer output", parents=[common_parser]
     )
+    parser.add_argument(
+        "--no-gainsel",
+        action="store_true",
+        default=False,
+        help="Do not check if the gain selection finished correctly (default False)",
+    )
     options.tel_id = "LST1"
     options.prod_id = get_prod_id()