lsapy 0.1.0.dev0__tar.gz → 0.1.0.dev2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- lsapy-0.1.0.dev2/CHANGELOG.rst +47 -0
- lsapy-0.1.0.dev2/CODE_OF_CONDUCT.md +132 -0
- lsapy-0.1.0.dev2/CONTRIBUTING.rst +157 -0
- lsapy-0.1.0.dev2/PKG-INFO +154 -0
- lsapy-0.1.0.dev2/README.rst +107 -0
- lsapy-0.1.0.dev2/docs/Makefile +20 -0
- lsapy-0.1.0.dev2/docs/api/index.rst +39 -0
- lsapy-0.1.0.dev2/docs/changelog.rst +1 -0
- lsapy-0.1.0.dev2/docs/community/code_of_conduct.rst +1 -0
- lsapy-0.1.0.dev2/docs/community/contributing.rst +1 -0
- lsapy-0.1.0.dev2/docs/community/index.rst +19 -0
- lsapy-0.1.0.dev2/docs/conf.py +130 -0
- lsapy-0.1.0.dev2/docs/getting_started/index.rst +29 -0
- lsapy-0.1.0.dev2/docs/index.rst +33 -0
- lsapy-0.1.0.dev2/docs/logos/FT2050-full_colour.png +0 -0
- lsapy-0.1.0.dev2/docs/logos/UCBlack.png +0 -0
- lsapy-0.1.0.dev2/docs/logos/UCWhite.png +0 -0
- lsapy-0.1.0.dev2/docs/make.bat +35 -0
- lsapy-0.1.0.dev2/docs/notebooks/criteria.ipynb +142 -0
- lsapy-0.1.0.dev2/docs/notebooks/functions.ipynb +322 -0
- lsapy-0.1.0.dev2/docs/notebooks/index.rst +16 -0
- {lsapy-0.1.0.dev0 → lsapy-0.1.0.dev2}/docs/notebooks/introduction.ipynb +5 -5
- lsapy-0.1.0.dev2/docs/notebooks/lsa.ipynb +1956 -0
- lsapy-0.1.0.dev2/docs/readme.rst +1 -0
- lsapy-0.1.0.dev2/docs/references.bib +35 -0
- lsapy-0.1.0.dev2/docs/references.rst +5 -0
- lsapy-0.1.0.dev2/environment.yml +30 -0
- lsapy-0.1.0.dev2/pyproject.toml +151 -0
- {lsapy-0.1.0.dev0 → lsapy-0.1.0.dev2}/src/lsapy/__init__.py +2 -2
- lsapy-0.1.0.dev2/src/lsapy/criteria.py +147 -0
- lsapy-0.1.0.dev2/src/lsapy/functions.py +635 -0
- lsapy-0.1.0.dev2/src/lsapy/lsa.py +638 -0
- lsapy-0.1.0.dev2/src/lsapy/statistics.py +211 -0
- lsapy-0.1.0.dev2/src/lsapy/utils.py +56 -0
- lsapy-0.1.0.dev0/PKG-INFO +0 -27
- lsapy-0.1.0.dev0/README.md +0 -7
- lsapy-0.1.0.dev0/environment.yml +0 -236
- lsapy-0.1.0.dev0/pyproject.toml +0 -69
- lsapy-0.1.0.dev0/src/lsapy/criteria.py +0 -72
- lsapy-0.1.0.dev0/src/lsapy/functions.py +0 -266
- lsapy-0.1.0.dev0/src/lsapy/lsa.py +0 -331
- lsapy-0.1.0.dev0/src/lsapy/statistics.py +0 -109
- lsapy-0.1.0.dev0/src/lsapy/utils.py +0 -28
- {lsapy-0.1.0.dev0 → lsapy-0.1.0.dev2}/LICENSE +0 -0
- {lsapy-0.1.0.dev0 → lsapy-0.1.0.dev2}/src/lsapy/data/climate_sample.nc +0 -0
- {lsapy-0.1.0.dev0 → lsapy-0.1.0.dev2}/src/lsapy/data/soil_sample.nc +0 -0
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=========
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Changelog
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=========
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v0.1.0-dev2 (2025-05-25)
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------------------------
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Contributor to this version: Baptiste Hamon (@baptistehamon).
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Internal changes
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^^^^^^^^^^^^^^^^
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* Major changes for documentation (issue `#2 <https://github.com/baptistehamon/lsapy/issues/2>`_, PR `#9 <https://github.com/baptistehamon/lsapy/pull/9>`_):
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* All public objects are now documented using the `NumPy-style <https://numpydoc.readthedocs.io/en/latest/format.html>`_.
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* *introduction.ipynb* has been slip into three different ones: *criteria.ipynb*, *function.ipynb*, and *lsa.ipynb*.
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* The top-level documentation has been updated/created:
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* The format of README and CHANGELOG files is now reStructuredText (RST).
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* A proper README has been created.
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* A CODE_OF_CONDUCT file adopting the `Contributor Covenant <https://www.contributor-covenant.org/>`_ code of conduct has been added.
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* A CONTRIBUTING.md providing guidelines on how to contribute to the project has been added.
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* FT20250 and UC logos used in the documentation have been added to the repository.
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* The documentation building using `Sphinx <https://www.sphinx-doc.org/en/master/>`_ has been setup:
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* The documentation uses the `PyData theme <https://pydata-sphinx-theme.readthedocs.io/en/stable/>`_.
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* A User-facing documentation is now available and has been published on `Read the Docs <https://readthedocs.org/>`_.
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* The project dependencies have been updated and made consistent accross *pyproject.toml* and *environments.yml* files.
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v0.1.0-dev1 (2025-05-16)
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------------------------
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Contributor to this version: Baptiste Hamon (@baptistehamon).
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New features
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^^^^^^^^^^^^
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* Add ruff configuration to the project.
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Bug fixes
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^^^^^^^^^
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* Fix the fit of ``MembershipSuitFunction`` returning the wrong best fit (issue `#1 <https://github.com/baptistehamon/lsapy/issues/1>`_, PR `#5 <https://github.com/baptistehamon/lsapy/pull/5>`_)
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v0.1.0-dev0 (2025-03-12)
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------------------------
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Contributor to this version: Baptiste Hamon (@baptistehamon).
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* First release on PyPI.
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New features
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^^^^^^^^^^^^
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* ``SuitabilityFunction`` to define the function used for suitability computation.
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* ``SuitabilityCriteria`` to define criteria to consider in the LSA
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* ``LandSuitability`` to conduct LSA.
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# Contributor Covenant Code of Conduct
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## Our Pledge
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We as members, contributors, and leaders pledge to make participation in our
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community a harassment-free experience for everyone, regardless of age, body
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identity and orientation.
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We pledge to act and interact in ways that contribute to an open, welcoming,
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diverse, inclusive, and healthy community.
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## Our Standards
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community include:
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* Accepting responsibility and apologizing to those affected by our mistakes,
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and learning from the experience
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* Focusing on what is best not just for us as individuals, but for the overall
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community
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* The use of sexualized language or imagery, and sexual attention or advances of
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any kind
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* Publishing others' private information, such as a physical or email address,
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without their explicit permission
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* Other conduct which could reasonably be considered inappropriate in a
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professional setting
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## Enforcement Responsibilities
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Community leaders are responsible for clarifying and enforcing our standards of
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acceptable behavior and will take appropriate and fair corrective action in
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response to any behavior that they deem inappropriate, threatening, offensive,
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or harmful.
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Community leaders have the right and responsibility to remove, edit, or reject
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not aligned to this Code of Conduct, and will communicate reasons for moderation
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decisions when appropriate.
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## Scope
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This Code of Conduct applies within all community spaces, and also applies when
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an individual is officially representing the community in public spaces.
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Examples of representing our community include using an official email address,
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posting via an official social media account, or acting as an appointed
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representative at an online or offline event.
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## Enforcement
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Instances of abusive, harassing, or otherwise unacceptable behavior may be
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reported to the community leaders.
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All complaints will be reviewed and investigated promptly and fairly.
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All community leaders are obligated to respect the privacy and security of the
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reporter of any incident.
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## Enforcement Guidelines
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Community leaders will follow these Community Impact Guidelines in determining
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the consequences for any action they deem in violation of this Code of Conduct:
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### 1. Correction
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**Consequence**: A private, written warning from community leaders, providing
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behavior was inappropriate. A public apology may be requested.
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### 2. Warning
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actions.
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**Consequence**: A warning with consequences for continued behavior. No
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interaction with the people involved, including unsolicited interaction with
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those enforcing the Code of Conduct, for a specified period of time. This
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includes avoiding interactions in community spaces as well as external channels
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like social media. Violating these terms may lead to a temporary or permanent
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ban.
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**Consequence**: A temporary ban from any sort of interaction or public
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**Consequence**: A permanent ban from any sort of public interaction within the
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## Attribution
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This Code of Conduct is adapted from the [Contributor Covenant][homepage],
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version 2.1, available at
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[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
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Community Impact Guidelines were inspired by
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[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
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For answers to common questions about this code of conduct, see the FAQ at
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[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
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[https://www.contributor-covenant.org/translations][translations].
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[homepage]: https://www.contributor-covenant.org
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[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
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[Mozilla CoC]: https://github.com/mozilla/diversity
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[FAQ]: https://www.contributor-covenant.org/faq
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[translations]: https://www.contributor-covenant.org/translations
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=====================
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Contributing to LSAPy
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=====================
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No matter the scope of your contribution, help is always welcome!
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The `issue tracker`_ is the best place to start if you want to contribute to `LSAPy`. You can get involved in different ways:
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* **Submitting feedbacks**: We welcome any feedback on the library, whether it's about the API, the documentation, or anything else.
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* **Suggesting new features**: If you have an idea for a new feature or improvement. Explain your idea in details and provide any thoughts you have on how it could be implemented.
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* **Reporting bugs**: If you find a bug, please report it making sure to include as much information as possible to help us reproduce the bug (e.g., operating system, local setup details, steps to reproduce it...).
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The `issue tracker`_ is also the place to ask questions about the library. The maintainers and the community will be happy to help you.
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Contribution Workflow
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---------------------
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Below is the steps to follow for contributing to the project.
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#. Fork the `LSAPy` repository on GitHub to your own account.
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#. Clone your forked repository to your local machine.
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.. code-block:: shell
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git clone git@github.com:<your_username>/lsapy.git
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cd lsapy/
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#. Create a virtual environment (``conda`` is recommended) and install the dependencies.
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.. code-block:: shell
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conda env create -f environment.yml
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conda activate lsapy
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python -m pip install -e .
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#. Create a new branch for your changes.
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.. code-block:: shell
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git checkout -b name-of-your-bugfix-or-feature
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You can now make changes.
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#. Before committing your changes, we ask you to format your code using `ruff`:
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.. code-block:: shell
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ruff check --fix src/lsapy/
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ruff format src/lsapy/
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This will automatically format your code and fix any linting issues.
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#. The last step before committing is to run the tests:
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.. code-block:: shell
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pytest --doctest-modules src/lsapy/ # to run doctests
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#. Commit your changes and push your branch.
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git add *
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git commit -m "Short description of your changes"
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#. Create a pull request on GitHub.
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Before creating a pull request, we first ask you to open an issue in the `GitHub repository`_. Describe the bug you would
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like to fix or the feature you would like to add. Link the issue to your pull request.
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.. note::
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**Longer Term Commitment ?**
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While the project is still in its early stages, a bigger maintainers team may be required in the future if the project
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grows. If you like the project and are interested in joining the maintainers team, please reach out to us. We will be happy to
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discuss it with you.
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Reminder for maintainers
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------------------------
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This section provides some useful information for maintainers.
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Versioning
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^^^^^^^^^^
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Name: lsapy
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Summary: A Python package for Land Suitability Analysis.
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Keywords: LSAPy,Land Suitability Analysis,Spatial Analysis,GIS,Geography
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Author-email: Baptiste Hamon <baptiste.hamon@pg.canterbury.ac.nz>
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LSAPy: Land Suitability Analysis in Python
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===========================================
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|pypi| |zenodo| |ruff|
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`LSAPy` stand for Land Suitability Analysis (LSA) in Python. Its objective is to make conducting
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LSA in Python easier and more accessible to users. It provides a set of objects built around
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`xarray`_ and operating together, making LSA's workflow straight forward and easy to understand.
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.. _`xarray`: https://xarray.pydata.org/en/stable/
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Quick Start
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-------------
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To install `LSAPy`, you can use `pip`:
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pip install lsapy
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You can now perform your LSA:
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.. code-block:: python
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# import modules
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from lsapy import SuitabilityFunction, SuitabilityCriteria, LandSuitability
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criteria = {
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'crit1': SuitabilityCriteria(
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name='criteria1',
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indicator= indicator1, # xarray object
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suitability_function= SuitabilityFunction("relevant-function")
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),
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'crit2': SuitabilityCriteria(
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suitability_function= SuitabilityFunction("relevant-function")
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)
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# add all necessary criteria
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}
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# define your land suitability
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ls = LandSuitability(
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# run your analysis
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ls.compute_suitability(params)
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More detailed tutorials and examples can be found in the `User Guide`_.
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Contributing
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------------
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`LSAPy` is an open-source project and we welcome contributions from the community. If you are interested in contributing, please
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refer to the `Contribution`_ section for guidelines on how to get started helping us improve the library.
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.. _`Contribution`: https://lsapy.readthedocs.io/en/latest/community/contributing.html
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Credits
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-------
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The development of `LSAPy` started as part of a PhD, funded by the the `Food Transition 2050`_ Joint Postgraduate School and hosted
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by the `University of Canterbury`_ in New Zealand.
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The Python package has been created following the `pyOpenSci Guidebook`_.
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.. _`Food Transition 2050`: https://www.foodtransitions2050.ac.nz/
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:alt: Food Transition 2050 Logo
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:alt: University of Canterbury Logo
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.. |pypi| image:: https://img.shields.io/pypi/v/lsapy.svg
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:target: https://pypi.python.org/pypi/lsapy
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:alt: Python Package Index Build
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.. |zenodo| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.15015111.svg
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:target: https://doi.org/10.5281/zenodo.15015111
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:alt: Zenodo DOI
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:target: https://github.com/astral-sh/ruff
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:alt: Ruff
|
|
@@ -0,0 +1,107 @@
|
|
|
1
|
+
LSAPy: Land Suitability Analysis in Python
|
|
2
|
+
===========================================
|
|
3
|
+
|
|
4
|
+
|pypi| |zenodo| |ruff|
|
|
5
|
+
|
|
6
|
+
`LSAPy` stand for Land Suitability Analysis (LSA) in Python. Its objective is to make conducting
|
|
7
|
+
LSA in Python easier and more accessible to users. It provides a set of objects built around
|
|
8
|
+
`xarray`_ and operating together, making LSA's workflow straight forward and easy to understand.
|
|
9
|
+
|
|
10
|
+
.. _`xarray`: https://xarray.pydata.org/en/stable/
|
|
11
|
+
|
|
12
|
+
Quick Start
|
|
13
|
+
-------------
|
|
14
|
+
To install `LSAPy`, you can use `pip`:
|
|
15
|
+
|
|
16
|
+
.. code-block:: shell
|
|
17
|
+
|
|
18
|
+
pip install lsapy
|
|
19
|
+
|
|
20
|
+
|
|
21
|
+
You can now perform your LSA:
|
|
22
|
+
|
|
23
|
+
.. code-block:: python
|
|
24
|
+
|
|
25
|
+
# import modules
|
|
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|
+
from lsapy import SuitabilityFunction, SuitabilityCriteria, LandSuitability
|
|
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|
+
|
|
28
|
+
# define your criteria
|
|
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|
+
criteria = {
|
|
30
|
+
'crit1': SuitabilityCriteria(
|
|
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|
+
name='criteria1',
|
|
32
|
+
indicator= indicator1, # xarray object
|
|
33
|
+
suitability_function= SuitabilityFunction("relevant-function")
|
|
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|
+
),
|
|
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|
+
'crit2': SuitabilityCriteria(
|
|
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|
+
name='criteria2',
|
|
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|
+
indicator= indicator2, # xarray object
|
|
38
|
+
suitability_function= SuitabilityFunction("relevant-function")
|
|
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|
+
)
|
|
40
|
+
# add all necessary criteria
|
|
41
|
+
}
|
|
42
|
+
|
|
43
|
+
# define your land suitability
|
|
44
|
+
ls = LandSuitability(
|
|
45
|
+
name= 'name_of_your_lsa',
|
|
46
|
+
criteria= criteria,
|
|
47
|
+
)
|
|
48
|
+
|
|
49
|
+
# run your analysis
|
|
50
|
+
ls.compute_suitability(params)
|
|
51
|
+
|
|
52
|
+
More detailed tutorials and examples can be found in the `User Guide`_.
|
|
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|
+
|
|
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|
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.. _`User Guide`: https://lsapy.readthedocs.io/en/latest/notebooks/index.html
|
|
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|
+
|
|
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|
+
|
|
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|
+
Contributing
|
|
58
|
+
------------
|
|
59
|
+
|
|
60
|
+
`LSAPy` is an open-source project and we welcome contributions from the community. If you are interested in contributing, please
|
|
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|
+
refer to the `Contribution`_ section for guidelines on how to get started helping us improve the library.
|
|
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|
+
|
|
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|
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.. _`Contribution`: https://lsapy.readthedocs.io/en/latest/community/contributing.html
|
|
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|
+
|
|
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|
+
Credits
|
|
66
|
+
-------
|
|
67
|
+
|
|
68
|
+
The development of `LSAPy` started as part of a PhD, funded by the the `Food Transition 2050`_ Joint Postgraduate School and hosted
|
|
69
|
+
by the `University of Canterbury`_ in New Zealand.
|
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|
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|
|
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|
+
|FT2050| |UC-white| |UC-black|
|
|
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|
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|
|
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|
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The Python package has been created following the `pyOpenSci Guidebook`_.
|
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|
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.. _`Food Transition 2050`: https://www.foodtransitions2050.ac.nz/
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.. _`University of Canterbury`: https://www.canterbury.ac.nz/
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.. _`pyOpenSci Guidebook`: https://www.pyopensci.org/python-package-guide/
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.. |FT2050| image:: https://raw.githubusercontent.com/baptistehamon/lsapy/main/docs/logos/FT2050-full_colour.png
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:target: https://www.foodtransitions2050.ac.nz/
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:alt: Food Transition 2050 Logo
|
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%: Makefile
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=========
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LSAPy API
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=========
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This page provides an overview of all implemented public objects, functions and methods of the `LSAPy` package.
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.. warning::
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meaning the package should not be considered stable yet. Breaking changes are likely to
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occur before the first official release.
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Constructors
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------------
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SuitabilityFunction
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SuitabilityCriteria
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LandSuitability
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Membership Functions
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--------------------
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functions.logistic
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functions.sigmoid
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functions.vetharaniam2022_eq5
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:html_theme.sidebar_secondary.remove:
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=========
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Community
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=========
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The project is only at the beginning of its journey but help is always welcome! We are working hard to make it better,
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and in that sense, we appreciate any feedback and contributions. As a project's contributor, you should adhere to the
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:doc:`Code of Conduct </community/code_of_conduct>`.
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:caption: Community
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:hidden:
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Contributing <contributing>
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Code of Conduct <code_of_conduct>
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