lovis4u 0.0.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (142) hide show
  1. lovis4u-0.0.1/LICENSE +13 -0
  2. lovis4u-0.0.1/LICENSE_dependencies +677 -0
  3. lovis4u-0.0.1/PKG-INFO +134 -0
  4. lovis4u-0.0.1/README.md +112 -0
  5. lovis4u-0.0.1/bin/lovis4u +62 -0
  6. lovis4u-0.0.1/lovis4u/DataProcessing.py +928 -0
  7. lovis4u-0.0.1/lovis4u/Drawing.py +550 -0
  8. lovis4u-0.0.1/lovis4u/Manager.py +971 -0
  9. lovis4u-0.0.1/lovis4u/Methods.py +238 -0
  10. lovis4u-0.0.1/lovis4u/__init__.py +4 -0
  11. lovis4u-0.0.1/lovis4u/lovis4u_data/.DS_Store +0 -0
  12. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/.DS_Store +0 -0
  13. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/.DS_Store +0 -0
  14. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/LICENSE.md +674 -0
  15. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/README.md +141 -0
  16. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/bin/mmseqs +0 -0
  17. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/examples/DB.fasta +40000 -0
  18. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/examples/QUERY.fasta +1000 -0
  19. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM10.out +23 -0
  20. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM100.out +23 -0
  21. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM110.out +23 -0
  22. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM120.out +23 -0
  23. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM130.out +23 -0
  24. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM140.out +23 -0
  25. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM150.out +23 -0
  26. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM160.out +23 -0
  27. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM170.out +23 -0
  28. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM180.out +23 -0
  29. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM190.out +23 -0
  30. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM20.out +23 -0
  31. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM30.out +25 -0
  32. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM40.out +23 -0
  33. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM50.out +23 -0
  34. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM60.out +23 -0
  35. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM70.out +23 -0
  36. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM80.out +23 -0
  37. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/PAM90.out +23 -0
  38. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/VTML10.out +34 -0
  39. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/VTML120.out +34 -0
  40. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/VTML160.out +34 -0
  41. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/VTML20.out +33 -0
  42. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/VTML40.out +34 -0
  43. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/VTML80.out +35 -0
  44. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum100.out +23 -0
  45. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum30.out +23 -0
  46. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum35.out +23 -0
  47. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum40.out +23 -0
  48. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum45.out +23 -0
  49. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum50.out +23 -0
  50. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum55.out +23 -0
  51. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum60.out +23 -0
  52. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum62.out +25 -0
  53. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum65.out +23 -0
  54. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum70.out +23 -0
  55. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum75.out +23 -0
  56. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum80.out +23 -0
  57. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum85.out +23 -0
  58. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum90.out +23 -0
  59. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/blosum95.out +23 -0
  60. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/matrices/nucleotide.out +9 -0
  61. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/userguide.pdf +0 -0
  62. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_linux/util/bash-completion.sh +18 -0
  63. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/LICENSE.md +674 -0
  64. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/README.md +141 -0
  65. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/bin/mmseqs +0 -0
  66. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/examples/DB.fasta +40000 -0
  67. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/examples/QUERY.fasta +1000 -0
  68. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM10.out +23 -0
  69. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM100.out +23 -0
  70. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM110.out +23 -0
  71. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM120.out +23 -0
  72. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM130.out +23 -0
  73. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM140.out +23 -0
  74. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM150.out +23 -0
  75. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM160.out +23 -0
  76. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM170.out +23 -0
  77. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM180.out +23 -0
  78. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM190.out +23 -0
  79. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM20.out +23 -0
  80. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM30.out +25 -0
  81. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM40.out +23 -0
  82. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM50.out +23 -0
  83. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM60.out +23 -0
  84. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM70.out +23 -0
  85. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM80.out +23 -0
  86. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/PAM90.out +23 -0
  87. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/VTML10.out +34 -0
  88. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/VTML120.out +34 -0
  89. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/VTML160.out +34 -0
  90. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/VTML20.out +33 -0
  91. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/VTML40.out +34 -0
  92. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/VTML80.out +35 -0
  93. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum100.out +23 -0
  94. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum30.out +23 -0
  95. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum35.out +23 -0
  96. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum40.out +23 -0
  97. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum45.out +23 -0
  98. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum50.out +23 -0
  99. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum55.out +23 -0
  100. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum60.out +23 -0
  101. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum62.out +25 -0
  102. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum65.out +23 -0
  103. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum70.out +23 -0
  104. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum75.out +23 -0
  105. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum80.out +23 -0
  106. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum85.out +23 -0
  107. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum90.out +23 -0
  108. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/blosum95.out +23 -0
  109. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/matrices/nucleotide.out +9 -0
  110. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/userguide.pdf +0 -0
  111. lovis4u-0.0.1/lovis4u/lovis4u_data/bin/mmseqs_mac/util/bash-completion.sh +18 -0
  112. lovis4u-0.0.1/lovis4u/lovis4u_data/category_colors.tsv +11 -0
  113. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/.DS_Store +0 -0
  114. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/LICENSE +8 -0
  115. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Black.ttf +0 -0
  116. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-BlackItalic.ttf +0 -0
  117. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Bold.ttf +0 -0
  118. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-BoldItalic.ttf +0 -0
  119. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Italic.ttf +0 -0
  120. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Light.ttf +0 -0
  121. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-LightItalic.ttf +0 -0
  122. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Medium.ttf +0 -0
  123. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Regular.ttf +0 -0
  124. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-Thin.ttf +0 -0
  125. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/Lato-ThinItalic.ttf +0 -0
  126. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/NotoSansMono-Medium.ttf +0 -0
  127. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/OFL.txt +93 -0
  128. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/RobotoMono-Medium.ttf +0 -0
  129. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/RobotoMono-Regular.ttf +0 -0
  130. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/iosevka-medium.ttf +0 -0
  131. lovis4u-0.0.1/lovis4u/lovis4u_data/fonts/iosevka-regular.ttf +0 -0
  132. lovis4u-0.0.1/lovis4u/lovis4u_data/help.txt +99 -0
  133. lovis4u-0.0.1/lovis4u/lovis4u_data/palette.txt +14 -0
  134. lovis4u-0.0.1/lovis4u/lovis4u_data/standard.cfg +111 -0
  135. lovis4u-0.0.1/lovis4u.egg-info/PKG-INFO +134 -0
  136. lovis4u-0.0.1/lovis4u.egg-info/SOURCES.txt +140 -0
  137. lovis4u-0.0.1/lovis4u.egg-info/dependency_links.txt +1 -0
  138. lovis4u-0.0.1/lovis4u.egg-info/not-zip-safe +1 -0
  139. lovis4u-0.0.1/lovis4u.egg-info/requires.txt +10 -0
  140. lovis4u-0.0.1/lovis4u.egg-info/top_level.txt +1 -0
  141. lovis4u-0.0.1/setup.cfg +4 -0
  142. lovis4u-0.0.1/setup.py +33 -0
lovis4u-0.0.1/LICENSE ADDED
@@ -0,0 +1,13 @@
1
+ DO WHAT THE FUCK YOU WANT TO PUBLIC LICENSE
2
+ Version 2, December 2004
3
+
4
+ Copyright (C) 2004 Sam Hocevar <sam@hocevar.net>
5
+
6
+ Everyone is permitted to copy and distribute verbatim or modified
7
+ copies of this license document, and changing it is allowed as long
8
+ as the name is changed.
9
+
10
+ DO WHAT THE FUCK YOU WANT TO PUBLIC LICENSE
11
+ TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
12
+
13
+ 0. You just DO WHAT THE FUCK YOU WANT TO.