lorebase-cli 0.2.3__tar.gz

lorebase_cli-0.2.3/.gitignore

@@ -0,0 +1,79 @@
+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+dist/
+*.egg-info/
+.eggs/
+.venv/
+venv/
+.python-eggs/
+pip-wheel-metadata/
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+.pyre/
+.pytype/
+.hypothesis/
+.coverage
+.coverage.*
+coverage.xml
+htmlcov/
+.tox/
+.nox/
+*.prof
+
+# Node
+node_modules/
+.pnpm-store/
+.npm/
+.yarn/
+!.yarn/releases
+.pnp.*
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+pnpm-debug.log*
+.vite/
+*.tsbuildinfo
+apps/web/dist/
+apps/web/.vitest/
+
+# Environment and secrets
+.env
+.env.*
+!.env.example
+*.pem
+*.key
+secrets/
+
+# Docker
+docker-compose.override.yaml
+docker-compose.override.yml
+.docker/
+
+# Data and local artifacts
+*.sqlite
+*.db
+/tmp/
+/data/
+tests/perf/results/
+
+# Editors and OS
+.idea/
+.vscode/*
+!.vscode/extensions.json
+!.vscode/settings.example.json
+*.swp
+*.swo
+*~
+.DS_Store
+Thumbs.db
+*.code-workspace
+.history/
+
+# Session worktrees
+.claude/

lorebase_cli-0.2.3/PKG-INFO

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+Metadata-Version: 2.5
+Name: lorebase-cli
+Version: 0.2.3
+Summary: Lorebase CLI
+Requires-Python: >=3.12
+Requires-Dist: lorebase-client<0.3,>=0.2
+Requires-Dist: typer>=0.27
+Provides-Extra: linkml
+Requires-Dist: pyyaml>=6.0; extra == 'linkml'
+Provides-Extra: parquet
+Requires-Dist: pyarrow>=15; extra == 'parquet'

lorebase_cli-0.2.3/pyproject.toml

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+[project]
+name = "lorebase-cli"
+version = "0.2.3"
+description = "Lorebase CLI"
+requires-python = ">=3.12"
+dependencies = [
+  "lorebase-client>=0.2,<0.3",
+  # Command line framework with shell completion.
+  "typer>=0.27",
+]
+
+[project.optional-dependencies]
+# Parquet imports (`lorebase import records data.parquet`).
+parquet = ["pyarrow>=15"]
+# LinkML schema interchange (`lorebase schema export --format linkml`, `schema import --from linkml`).
+linkml = ["pyyaml>=6.0"]
+
+[project.scripts]
+lorebase = "lorebase_cli.main:main"
+
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[tool.hatch.build.targets.wheel]
+packages = ["src/lorebase_cli"]

lorebase_cli-0.2.3/src/lorebase_cli/__init__.py

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+"""lorebase CLI: command line client of a Lorebase Keeper."""
+
+__version__ = "0.2.3"

lorebase_cli-0.2.3/src/lorebase_cli/__main__.py

@@ -0,0 +1,5 @@
+"""`python -m lorebase_cli`."""
+
+from lorebase_cli.main import main
+
+main()

lorebase_cli-0.2.3/src/lorebase_cli/batch_import.py

@@ -0,0 +1,330 @@
+"""Importing Records together with their Links through the `import_batch` Operation.
+
+Files of Records (one per Kind) and files of Links (one per Relation) are cut into requests
+that keep a Record with its Links: a Link travels with the Record at its `from` end (or, when
+that Record is not in the import, at its `to` end), so a Relation that is `required_from` is
+satisfied in the Revision that creates the Record. Units are sent in this order: Records that
+own no Link (in the order of the files given), then Records with their Links, then Links whose
+ends are not part of the import. A unit is never split; a request is full when the next unit
+would pass `batch_size` rows.
+
+Every file is read twice: once to coerce and check all rows before anything is written (this
+also finds the keys of the Records), once to send. The Links are held in memory, since they can
+be owned by Records of any file.
+"""
+
+from __future__ import annotations
+
+import unicodedata
+from collections.abc import Iterable, Iterator, Mapping, Sequence
+from dataclasses import dataclass, field
+from typing import Any
+
+from lorebase_cli import sources
+from lorebase_cli.coercion import KEY_COLUMN
+from lorebase_cli.failures import CliError, ImportAbortedError
+from lorebase_cli.importing import (
+    BatchResult,
+    ImportReport,
+    Prepared,
+    Progress,
+    coerced_rows,
+    prepare,
+)
+from lorebase_client import LorebaseClient, LorebaseError
+
+KEY_TYPES = frozenset({"string", "text", "uri", "ref", "enum", "integer"})
+Identity = tuple[str, str]  # Kind api name and Record key
+
+
+@dataclass(frozen=True)
+class Source:
+    """A file of Records of a Kind, or of Links of a Relation."""
+
+    name: str
+    path: str
+
+
+def parse_sources(pairs: Iterable[str], option: str, shape: str) -> list[Source]:
+    """`--records Kind=file` or `--links relation=file` options."""
+    out: list[Source] = []
+    for pair in pairs:
+        name, separator, path = pair.partition("=")
+        if not separator or not name or not path:
+            raise CliError(f"{option} expects {shape}, got {pair!r}")
+        if path == sources.STDIN:
+            raise CliError(f"{option}: import batch reads files, not standard input")
+        out.append(Source(name, path))
+    return out
+
+
+@dataclass(frozen=True)
+class Item:
+    """A row ready to send and where it came from (1-based, header excluded)."""
+
+    name: str  # Kind or Relation api name
+    row: dict[str, Any]
+    path: str
+    number: int
+
+
+@dataclass
+class Unit:
+    """A Record with the Links it owns, or one Link on its own."""
+
+    record: Item | None = None
+    links: list[Item] = field(default_factory=list)
+
+    @property
+    def size(self) -> int:
+        return (self.record is not None) + len(self.links)
+
+
+@dataclass(frozen=True)
+class RequestRows:
+    """The rows of one request."""
+
+    records: list[Item]
+    links: list[Item]
+
+    @property
+    def size(self) -> int:
+        return len(self.records) + len(self.links)
+
+    def parameters(self) -> tuple[list[dict[str, Any]], list[dict[str, Any]]]:
+        return (
+            [{"kind": i.name, **i.row} for i in self.records],
+            [{"relation": i.name, **i.row} for i in self.links],
+        )
+
+    def locate(self, path: Sequence[Any]) -> str | None:
+        """`file row N rest` for an issue path under `parameters.records` or `.links`."""
+        if len(path) < 3 or path[0] != "parameters" or not isinstance(path[2], int):
+            return None
+        items = {"records": self.records, "links": self.links}.get(str(path[1]))
+        if items is None or not 0 <= path[2] < len(items):
+            return None
+        item = items[path[2]]
+        rest = ".".join(str(part) for part in path[3:])
+        return f"{item.path} row {item.number}" + (f" {rest}" if rest else "")
+
+
+def pack(units: Iterable[Unit], size: int) -> Iterator[RequestRows]:
+    """Units in requests of at most `size` rows (a larger unit is a request of its own)."""
+    records: list[Item] = []
+    links: list[Item] = []
+    for unit in units:
+        if (records or links) and len(records) + len(links) + unit.size > size:
+            yield RequestRows(records, links)
+            records, links = [], []
+        if unit.record is not None:
+            records.append(unit.record)
+        links.extend(unit.links)
+    if records or links:
+        yield RequestRows(records, links)
+
+
+class BatchImport:
+    """The files of one `import batch`, checked and ready to be read again for sending."""
+
+    def __init__(
+        self,
+        schema: Mapping[str, Any],
+        records: Sequence[Source],
+        links: Sequence[Source],
+        *,
+        fmt: str | None,
+        delimiter: str | None,
+        renames: Mapping[str, str],
+        ignore_unknown: bool,
+    ) -> None:
+        self.records = list(records)
+        self.fmt = fmt
+        self.delimiter = delimiter
+        self.ignore_unknown = ignore_unknown
+        self.prepared = {
+            s.name: prepare(schema, "records", s.name, renames=renames) for s in records
+        }
+        self.key_attributes = {s.name: _key_attribute(schema, s.name) for s in records}
+        self.record_count = 0
+        self.identities: dict[Identity, None] = {}  # in file order
+        self.owned: dict[Identity, list[Item]] = {}
+        self.loose: list[Item] = []
+        self._load_links(schema, links, renames)
+        self._scan_records()
+        self._assign_links()
+
+    # Reading --------------------------------------------------------------------------------
+
+    def _rows(self, source: Source, prepared: Prepared) -> Iterator[Item]:
+        fmt = sources.detect_format(source.path, self.fmt)
+        rows = coerced_rows(
+            sources.read_rows(source.path, fmt, delimiter=self.delimiter),
+            prepared,
+            ignore_unknown=self.ignore_unknown,
+            source=source.path,
+        )
+        for number, row in enumerate(rows, start=1):
+            yield Item(source.name, row, source.path, number)
+
+    def _load_links(
+        self, schema: Mapping[str, Any], links: Sequence[Source], renames: Mapping[str, str]
+    ) -> None:
+        self._links: list[tuple[Item, Identity, Identity]] = []
+        for source in links:
+            prepared = prepare(schema, "links", source.name, renames=renames)
+            from_kind, to_kind = _relation_kinds(schema, source.name)
+            for item in self._rows(source, prepared):
+                ends = (item.row.get("from"), item.row.get("to"))
+                if not all(isinstance(end, str) for end in ends):
+                    raise CliError(
+                        f"{item.path}: row {item.number}: a Link needs `from` and `to` "
+                        "(columns from_key and to_key)"
+                    )
+                a, b = (_normalized(str(end)) for end in ends)
+                self._links.append((item, (from_kind, a), (to_kind, b)))
+
+    def _scan_records(self) -> None:
+        for source in self.records:
+            for item in self._rows(source, self.prepared[source.name]):
+                self.record_count += 1
+                identity = self._identity(item)
+                if identity is not None:
+                    self.identities.setdefault(identity)
+
+    def _assign_links(self) -> None:
+        for item, start, end in self._links:
+            owner = start if start in self.identities else end if end in self.identities else None
+            if owner is None:
+                self.loose.append(item)
+            else:
+                self.owned.setdefault(owner, []).append(item)
+        del self._links
+
+    def _identity(self, item: Item) -> Identity | None:
+        attribute = self.key_attributes[item.name]
+        value = item.row.get(attribute or KEY_COLUMN)
+        return None if value is None else (item.name, _normalized(str(value)))
+
+    # Units ----------------------------------------------------------------------------------
+
+    def units(self) -> Iterator[Unit]:
+        """Records without Links, Records with their Links, then the Links left over."""
+        owned = {identity: list(links) for identity, links in self.owned.items()}
+        with_links: list[Unit] = []
+        for source in self.records:
+            for item in self._rows(source, self.prepared[source.name]):
+                identity = self._identity(item)
+                links = owned.pop(identity, []) if identity is not None else []
+                if links:
+                    with_links.append(Unit(item, links))
+                else:
+                    yield Unit(item)
+        yield from with_links
+        for link in self.loose:
+            yield Unit(links=[link])
+
+    def sizes(self) -> list[int]:
+        """The sizes of the units in the order `units()` yields them."""
+        with_links = [1 + len(self.owned[i]) for i in self.identities if i in self.owned]
+        lone = self.record_count - len(with_links)
+        return [1] * lone + with_links + [1] * len(self.loose)
+
+    @property
+    def link_count(self) -> int:
+        return sum(len(v) for v in self.owned.values()) + len(self.loose)
+
+    def expected_requests(self, size: int) -> int:
+        """How many requests `pack` will make (exact unless Records repeat)."""
+        requests = used = 0
+        for unit_size in self.sizes():
+            if used and used + unit_size > size:
+                requests += 1
+                used = 0
+            used += unit_size
+        return requests + bool(used)
+
+
+def _normalized(key: str) -> str:
+    return unicodedata.normalize("NFC", key)
+
+
+def _kind_entry(schema: Mapping[str, Any], name: str) -> Mapping[str, Any]:
+    return next(k for k in schema["kinds"].values() if k["api_name"] == name)
+
+
+def _key_attribute(schema: Mapping[str, Any], kind_name: str) -> str | None:
+    """The api name of the one Attribute that is the key of a Kind (`None`: a `key` column)."""
+    kind = _kind_entry(schema, kind_name)
+    key = kind.get("primary_key") or []
+    if not key:
+        return None
+    if len(key) > 1:
+        raise CliError(
+            f"{kind_name} has a composite key; import batch cannot tell which Links go with "
+            "which Record. Use `import records` with --link instead"
+        )
+    attribute = kind["attributes"][key[0]]
+    if attribute["type"]["name"] not in KEY_TYPES:
+        raise CliError(
+            f"the key of {kind_name} is a {attribute['type']['name']}; import batch needs a "
+            "text or integer key. Use `import records` with --link instead"
+        )
+    return str(attribute["api_name"])
+
+
+def _relation_kinds(schema: Mapping[str, Any], name: str) -> tuple[str, str]:
+    """The api names of the Kinds at the `from` and `to` ends of a Relation."""
+    relation = next(r for r in schema["relations"].values() if r["api_name"] == name)
+    kinds = schema["kinds"]
+    return kinds[relation["from_kind"]]["api_name"], kinds[relation["to_kind"]]["api_name"]
+
+
+def run_batch_import(
+    client: LorebaseClient,
+    plan: BatchImport,
+    *,
+    domain: str,
+    branch: str | None,
+    name: str,
+    batch_size: int,
+    dry_run: bool = False,
+    message: str | None = None,
+    progress: Progress | None = None,
+) -> ImportReport:
+    """Send the units of `plan` in requests of at most `batch_size` rows."""
+    report = ImportReport("batch", name, domain, branch, dry_run)
+    first_row = 1
+    for number, request in enumerate(pack(plan.units(), batch_size), start=1):
+        last_row = first_row + request.size - 1
+        note = f"{message} (rows {first_row}-{last_row})" if message else None
+        records, links = request.parameters()
+        key = client.idempotency_key("import")  # a retry of this request cannot apply it twice
+        try:
+            result = client.operations.import_batch(
+                domain,
+                records,
+                links,
+                branch=branch,
+                dry_run=dry_run,
+                message=note,
+                idempotency_key=key,
+            )
+        except LorebaseError as error:
+            raise ImportAbortedError(
+                error,
+                first_row=first_row,
+                last_row=last_row,
+                committed_rows=report.rows,
+                committed_revisions=report.revisions,
+                scope=f"request {number} ({len(records)} Records, {len(links)} Links) was rejected",
+                locate=request.locate,
+            ) from error
+        outcome = BatchResult(
+            number, first_row, request.size, result.edit_count, result.revisions, result.status
+        )
+        report.batches.append(outcome)
+        if progress is not None:
+            progress(outcome)
+        first_row = last_row + 1
+    return report

lorebase_cli-0.2.3/src/lorebase_cli/coercion.py

@@ -0,0 +1,176 @@
+"""Coercion of file values to what the import Operations take, driven by the schema.
+
+CSV gives text; JSON Lines and Parquet give typed values. Keeper takes canonical forms:
+booleans are JSON booleans, integers and decimals are strings (never floats, so no digit is
+lost), floats are numbers, timestamps and dates are text, `json` values are JSON. Empty cells,
+nulls and NaN are left out of the row (the Attribute is unset).
+"""
+
+from __future__ import annotations
+
+import json
+import math
+import re
+from collections.abc import Iterable, Mapping
+from datetime import date, datetime
+from decimal import Decimal, InvalidOperation
+from typing import Any
+
+from lorebase_cli.failures import CliError
+
+TRUE_WORDS = frozenset({"true", "t", "yes", "y", "1"})
+FALSE_WORDS = frozenset({"false", "f", "no", "n", "0"})
+INTEGER = re.compile(r"[+-]?[0-9]+")
+KEY_COLUMN = "key"
+LINK_ENDS = {"from_key": "from", "to_key": "to"}
+LINK_COLUMNS = ("from", "to")
+
+
+class CoercionError(ValueError):
+    """A value that cannot take the type of its Attribute."""
+
+    def __init__(self, column: str, message: str) -> None:
+        super().__init__(f"column {column!r}: {message}")
+        self.column = column
+
+
+def is_missing(value: Any) -> bool:
+    """Empty text, null and NaN all mean `unset`."""
+    if value is None:
+        return True
+    if isinstance(value, str):
+        return value.strip() == ""
+    return isinstance(value, float) and math.isnan(value)
+
+
+def _boolean(column: str, value: Any) -> bool:
+    if isinstance(value, bool):
+        return value
+    if isinstance(value, int) and value in (0, 1):
+        return bool(value)
+    word = str(value).strip().lower()
+    if word in TRUE_WORDS:
+        return True
+    if word in FALSE_WORDS:
+        return False
+    raise CoercionError(column, f"{value!r} is not a boolean (true or false)")
+
+
+def _integer(column: str, value: Any) -> str:
+    if isinstance(value, bool):
+        raise CoercionError(column, "a boolean is not an integer")
+    if isinstance(value, int):
+        return str(value)
+    if isinstance(value, float | Decimal) and value == int(value):
+        return str(int(value))
+    text = str(value).strip()
+    if not INTEGER.fullmatch(text):
+        raise CoercionError(column, f"{value!r} is not an integer")
+    return text
+
+
+def _decimal(column: str, value: Any) -> str:
+    if isinstance(value, bool):
+        raise CoercionError(column, "a boolean is not a decimal")
+    try:
+        number = value if isinstance(value, Decimal) else Decimal(str(value).strip())
+    except InvalidOperation:
+        raise CoercionError(column, f"{value!r} is not a decimal number") from None
+    if not number.is_finite():
+        raise CoercionError(column, f"{value!r} is not a finite number")
+    return format(number, "f")
+
+
+def _float(column: str, value: Any) -> float:
+    if isinstance(value, bool):
+        raise CoercionError(column, "a boolean is not a float")
+    try:
+        number = float(value if not isinstance(value, str) else value.strip())
+    except ValueError:
+        raise CoercionError(column, f"{value!r} is not a number") from None
+    if not math.isfinite(number):
+        raise CoercionError(column, f"{value!r} is not a finite number")
+    return number
+
+
+def _json(column: str, value: Any, *, expect: type | None = None) -> Any:
+    parsed = value
+    if isinstance(value, str):
+        try:
+            parsed = json.loads(value)
+        except ValueError:
+            raise CoercionError(column, "is not valid JSON") from None
+    if expect is not None and not isinstance(parsed, expect):
+        raise CoercionError(column, f"must be a JSON {expect.__name__}")
+    return parsed
+
+
+def _timestamp(value: Any) -> str:
+    if isinstance(value, datetime):
+        return value.isoformat()
+    return str(value).strip()
+
+
+def coerce_value(type_name: str, column: str, value: Any) -> Any:
+    """`value` in the form Keeper takes for an Attribute of `type_name`."""
+    if type_name == "boolean":
+        return _boolean(column, value)
+    if type_name == "integer":
+        return _integer(column, value)
+    if type_name == "decimal":
+        return _decimal(column, value)
+    if type_name == "float":
+        return _float(column, value)
+    if type_name == "json":
+        return _json(column, value)
+    if type_name == "geo_point":
+        return _json(column, value, expect=dict)
+    if type_name == "array":
+        return _json(column, value, expect=list)
+    if type_name in ("timestamp", "date"):
+        if isinstance(value, date) and not isinstance(value, datetime):
+            return value.isoformat()
+        return _timestamp(value)
+    return value if isinstance(value, str) else str(value)
+
+
+def attribute_types(schema: Mapping[str, Any], section: str, name: str) -> dict[str, str]:
+    """Attribute api name to type name for a Kind (`kinds`) or Relation (`relations`)."""
+    elements: Mapping[str, Any] = schema.get(section, {})
+    for element in elements.values():
+        if element.get("api_name") == name:
+            return {
+                a["api_name"]: str(a["type"]["name"])
+                for a in element.get("attributes", {}).values()
+            }
+    known = ", ".join(sorted(e.get("api_name", "?") for e in elements.values())) or "none"
+    what = "Kind" if section == "kinds" else "Relation"
+    raise CliError(f"unknown {what} {name!r}; the schema has: {known}")
+
+
+def coerce_row(
+    types: Mapping[str, str],
+    row: Mapping[str, Any],
+    *,
+    renames: Mapping[str, str] | None = None,
+    ignore_unknown: bool = False,
+    extra_columns: Iterable[str] = (),
+) -> dict[str, Any]:
+    """One import row: columns renamed, unknown ones refused (or dropped), values coerced.
+
+    `extra_columns` are accepted besides Attributes (`key` for Kinds without a natural key,
+    `from` and `to` for Links); their values pass as text.
+    """
+    allowed = set(extra_columns)
+    out: dict[str, Any] = {}
+    for original, value in row.items():
+        column = (renames or {}).get(original, original)
+        if is_missing(value):
+            continue
+        if column in types:
+            out[column] = coerce_value(types[column], column, value)
+        elif column in allowed:
+            out[column] = value if isinstance(value, str) else str(value)
+        elif not ignore_unknown:
+            raise CoercionError(column, "is not an Attribute (use --ignore-unknown to skip it)")
+    return out

lorebase_cli-0.2.3/src/lorebase_cli/commands/__init__.py

@@ -0,0 +1 @@
+"""Command groups of the lorebase CLI."""