loqusdb 2.7.22__tar.gz → 2.7.23__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {loqusdb-2.7.22 → loqusdb-2.7.23}/PKG-INFO +7 -3
- {loqusdb-2.7.22 → loqusdb-2.7.23}/README.md +3 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/__init__.py +1 -1
- {loqusdb-2.7.22 → loqusdb-2.7.23}/pyproject.toml +12 -3
- {loqusdb-2.7.22 → loqusdb-2.7.23}/LICENSE +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/__main__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/build_models/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/build_models/case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/build_models/profile_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/build_models/variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/annotate.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/cli.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/delete.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/export.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/identity.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/load.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/load_profile.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/migrate.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/restore.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/update.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/view.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/commands/wipe.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/constants/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/exceptions/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/exceptions/case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/exceptions/profile.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/exceptions/vcf.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/log.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/models/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/models/case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/models/identity.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/models/profile_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/models/variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/mongo/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/mongo/adapter.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/mongo/case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/mongo/profile_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/mongo/structural_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/plugins/mongo/variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/resources/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/resources/loqusdb.20181005.gz +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/resources/maf_50_sites_GRCh37.vcf.gz +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/resources/maf_50_sites_GRCh38.vcf.gz +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/__init__.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/annotate.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/delete.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/load.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/migrate.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/profiling.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/update.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/loqusdb/utils/vcf.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/build_models/test_build_case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/build_models/test_build_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/build_models/test_is_greater.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/commands/test_export.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/commands/test_identity.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/commands/test_view.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/conftest.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/643594.clinical.SV.vcf +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/643594.clinical.vcf.gz +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/double_variant.vcf +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/funny_trio.ped +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/profile_snv.vcf +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/recessive_trio.ped +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/test.SV.vcf +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/test.vcf +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/test.vcf.gz +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/test.vcf.gz.tbi +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/fixtures/unsorted.vcf +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/functional/test_cli.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/plugins/mongo/test_case_operations.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/plugins/mongo/test_connect.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/plugins/mongo/test_flask_extension.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/plugins/mongo/test_get_sv.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/plugins/mongo/test_load_svs.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/plugins/mongo/test_variant_operations.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_case.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_delete.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_delete_family.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_delete_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_get_family.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_load_database.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_load_family.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_load_variants.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_migrate.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/utils/test_profiling.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/vcf_tools/test_check_par.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/vcf_tools/test_check_vcf.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/vcf_tools/test_format_sv_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/vcf_tools/test_format_variant.py +0 -0
- {loqusdb-2.7.22 → loqusdb-2.7.23}/tests/vcf_tools/test_vcf.py +0 -0
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Metadata-Version: 2.3
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Name: loqusdb
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Version: 2.7.
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Version: 2.7.23
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Summary: A simple observation count database
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License: MIT
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Author:
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Author-email:
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Author: Mans Magnuson
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Author-email: monsunas@gmail.com
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Maintainer: Clinical Genomics Bioinformatics Team
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Requires-Python: >=3.12,<4.0
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Programming Language :: Python :: 3
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storing variants, but there should not be a huge difference to use another
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database manager.
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Find more detailed instructions and examples in the [documentation][docs].
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## Installation ##
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}
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```
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[docs]: https://clinical-genomics.github.io/loqusdb
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[mongodb]: https://www.mongodb.org
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[publication]: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03609-z
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[pypi-img]: https://img.shields.io/pypi/v/loqusdb.svg?style=flat-square
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storing variants, but there should not be a huge difference to use another
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database manager.
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Find more detailed instructions and examples in the [documentation][docs].
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## Installation ##
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}
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```
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[docs]: https://clinical-genomics.github.io/loqusdb
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[mongodb]: https://www.mongodb.org
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[publication]: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03609-z
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[pypi-img]: https://img.shields.io/pypi/v/loqusdb.svg?style=flat-square
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[
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[project]
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name = "loqusdb"
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description = "A simple observation count database"
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authors = ["
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authors = [{name="Mans Magnuson", email="monsunas@gmail.com"}, {name="Adam Rosenbaum", email="adam.rosenbaum@regionvasterbotten.se"}, {name="Daniel Nilsson", email="daniel.nilsson@ki.se"}, {name="Chiara Rasi", email="chiara.rasi@scilifelab.se"}, {name="Jesper Eisfeldt", email="jesper.eisfeldt@scilifelab.se"}, {name="Henrik Stranneheim"},]
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maintainers = [ {name="Clinical Genomics Bioinformatics Team"}, {name="Clinical Genomics System Development Team"}, {name="Clinical Genomics Scout Team"}]
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license = "MIT"
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readme = "README.md"
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version = "2.7.23"
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[tool.poetry]
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include = [
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"README.md",
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"loqusdb/**/*",
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pytest = "*"
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pytest-cov = "*"
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[tool.poetry.group.docs.dependencies]
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mkdocs = "*"
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mkdocs-material = "*"
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markdown-include = "*"
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[tool.poetry.scripts]
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loqusdb = "loqusdb.commands.cli:cli"
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