looper 1.9.0__tar.gz → 1.9.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (82) hide show
  1. {looper-1.9.0/looper.egg-info → looper-1.9.1}/PKG-INFO +2 -2
  2. {looper-1.9.0 → looper-1.9.1}/looper/_version.py +1 -1
  3. {looper-1.9.0 → looper-1.9.1}/looper/cli_pydantic.py +1 -1
  4. {looper-1.9.0 → looper-1.9.1/looper.egg-info}/PKG-INFO +2 -2
  5. {looper-1.9.0 → looper-1.9.1}/looper.egg-info/requires.txt +1 -1
  6. {looper-1.9.0 → looper-1.9.1}/requirements/requirements-all.txt +1 -1
  7. {looper-1.9.0 → looper-1.9.1}/LICENSE.txt +0 -0
  8. {looper-1.9.0 → looper-1.9.1}/MANIFEST.in +0 -0
  9. {looper-1.9.0 → looper-1.9.1}/README.md +0 -0
  10. {looper-1.9.0 → looper-1.9.1}/logo_looper.svg +0 -0
  11. {looper-1.9.0 → looper-1.9.1}/looper/__init__.py +0 -0
  12. {looper-1.9.0 → looper-1.9.1}/looper/__main__.py +0 -0
  13. {looper-1.9.0 → looper-1.9.1}/looper/cli_divvy.py +0 -0
  14. {looper-1.9.0 → looper-1.9.1}/looper/command_models/DEVELOPER.md +0 -0
  15. {looper-1.9.0 → looper-1.9.1}/looper/command_models/README.md +0 -0
  16. {looper-1.9.0 → looper-1.9.1}/looper/command_models/__init__.py +0 -0
  17. {looper-1.9.0 → looper-1.9.1}/looper/command_models/arguments.py +0 -0
  18. {looper-1.9.0 → looper-1.9.1}/looper/command_models/commands.py +0 -0
  19. {looper-1.9.0 → looper-1.9.1}/looper/conductor.py +0 -0
  20. {looper-1.9.0 → looper-1.9.1}/looper/const.py +0 -0
  21. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_config.yaml +0 -0
  22. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/localhost_bulker_template.sub +0 -0
  23. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/localhost_docker_template.sub +0 -0
  24. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/localhost_singularity_template.sub +0 -0
  25. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/localhost_template.sub +0 -0
  26. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/lsf_template.sub +0 -0
  27. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/sge_template.sub +0 -0
  28. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/slurm_singularity_template.sub +0 -0
  29. {looper-1.9.0 → looper-1.9.1}/looper/default_config/divvy_templates/slurm_template.sub +0 -0
  30. {looper-1.9.0 → looper-1.9.1}/looper/divvy.py +0 -0
  31. {looper-1.9.0 → looper-1.9.1}/looper/exceptions.py +0 -0
  32. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/footer.html +0 -0
  33. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/footer_index.html +0 -0
  34. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/head.html +0 -0
  35. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/index.html +0 -0
  36. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/logo.html +0 -0
  37. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/navbar.html +0 -0
  38. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/navbar_links.html +0 -0
  39. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/navbar_list_parent.html +0 -0
  40. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/object.html +0 -0
  41. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/project_object.html +0 -0
  42. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/sample.html +0 -0
  43. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/status.html +0 -0
  44. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/status_table.html +0 -0
  45. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates/status_table_no_links.html +0 -0
  46. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/footer.html +0 -0
  47. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/footer_index.html +0 -0
  48. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/head.html +0 -0
  49. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/index.html +0 -0
  50. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/logo.html +0 -0
  51. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/navbar.html +0 -0
  52. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/navbar_links.html +0 -0
  53. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/navbar_list_parent.html +0 -0
  54. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/object.html +0 -0
  55. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/project_object.html +0 -0
  56. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/sample.html +0 -0
  57. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/status.html +0 -0
  58. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/status_table.html +0 -0
  59. {looper-1.9.0 → looper-1.9.1}/looper/jinja_templates_old/status_table_no_links.html +0 -0
  60. {looper-1.9.0 → looper-1.9.1}/looper/looper.py +0 -0
  61. {looper-1.9.0 → looper-1.9.1}/looper/parser_types.py +0 -0
  62. {looper-1.9.0 → looper-1.9.1}/looper/pipeline_interface.py +0 -0
  63. {looper-1.9.0 → looper-1.9.1}/looper/plugins.py +0 -0
  64. {looper-1.9.0 → looper-1.9.1}/looper/processed_project.py +0 -0
  65. {looper-1.9.0 → looper-1.9.1}/looper/project.py +0 -0
  66. {looper-1.9.0 → looper-1.9.1}/looper/schemas/divvy_config_schema.yaml +0 -0
  67. {looper-1.9.0 → looper-1.9.1}/looper/schemas/pipeline_interface_schema_generic.yaml +0 -0
  68. {looper-1.9.0 → looper-1.9.1}/looper/schemas/pipeline_interface_schema_project.yaml +0 -0
  69. {looper-1.9.0 → looper-1.9.1}/looper/schemas/pipeline_interface_schema_sample.yaml +0 -0
  70. {looper-1.9.0 → looper-1.9.1}/looper/utils.py +0 -0
  71. {looper-1.9.0 → looper-1.9.1}/looper.egg-info/SOURCES.txt +0 -0
  72. {looper-1.9.0 → looper-1.9.1}/looper.egg-info/dependency_links.txt +0 -0
  73. {looper-1.9.0 → looper-1.9.1}/looper.egg-info/entry_points.txt +0 -0
  74. {looper-1.9.0 → looper-1.9.1}/looper.egg-info/top_level.txt +0 -0
  75. {looper-1.9.0 → looper-1.9.1}/requirements/requirements-doc.txt +0 -0
  76. {looper-1.9.0 → looper-1.9.1}/requirements/requirements-test.txt +0 -0
  77. {looper-1.9.0 → looper-1.9.1}/setup.cfg +0 -0
  78. {looper-1.9.0 → looper-1.9.1}/setup.py +0 -0
  79. {looper-1.9.0 → looper-1.9.1}/tests/test_clean.py +0 -0
  80. {looper-1.9.0 → looper-1.9.1}/tests/test_comprehensive.py +0 -0
  81. {looper-1.9.0 → looper-1.9.1}/tests/test_desired_sample_range.py +0 -0
  82. {looper-1.9.0 → looper-1.9.1}/tests/test_natural_range.py +0 -0
{looper-1.9.0/looper.egg-info → looper-1.9.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: looper
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- Version: 1.9.0
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+ Version: 1.9.1
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  Summary: A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
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  Home-page: https://github.com/pepkit/looper
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  Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk, Johanna Klughammer, Andre Rendeiro
@@ -23,7 +23,7 @@ Requires-Dist: logmuse>=0.2.0
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  Requires-Dist: pandas>=2.0.2
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  Requires-Dist: pephubclient>=0.4.0
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  Requires-Dist: pipestat>=0.9.2
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- Requires-Dist: peppy>=0.40.2
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+ Requires-Dist: peppy<=0.40.2,>=0.40.0
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  Requires-Dist: pyyaml>=3.12
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  Requires-Dist: rich>=9.10.0
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  Requires-Dist: ubiquerg>=0.8.1a1
{looper-1.9.0 → looper-1.9.1}/looper/_version.py RENAMED
@@ -1,2 +1,2 @@
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- __version__ = "1.9.0"
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+ __version__ = "1.9.1"
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  # You must change the version in parser = pydantic2_argparse.ArgumentParser in cli_pydantic.py!!!
{looper-1.9.0 → looper-1.9.1}/looper/cli_pydantic.py RENAMED
@@ -336,7 +336,7 @@ def main(test_args=None) -> None:
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  prog="looper",
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  description="Looper: A job submitter for Portable Encapsulated Projects",
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  add_help=True,
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- version="1.9.0",
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+ version="1.9.1",
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  )
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  parser = add_short_arguments(parser, ArgumentEnum)
{looper-1.9.0 → looper-1.9.1/looper.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: looper
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- Version: 1.9.0
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+ Version: 1.9.1
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  Summary: A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
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  Home-page: https://github.com/pepkit/looper
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  Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk, Johanna Klughammer, Andre Rendeiro
@@ -23,7 +23,7 @@ Requires-Dist: logmuse>=0.2.0
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  Requires-Dist: pandas>=2.0.2
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  Requires-Dist: pephubclient>=0.4.0
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  Requires-Dist: pipestat>=0.9.2
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- Requires-Dist: peppy>=0.40.2
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+ Requires-Dist: peppy<=0.40.2,>=0.40.0
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  Requires-Dist: pyyaml>=3.12
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  Requires-Dist: rich>=9.10.0
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  Requires-Dist: ubiquerg>=0.8.1a1
{looper-1.9.0 → looper-1.9.1}/looper.egg-info/requires.txt RENAMED
@@ -6,7 +6,7 @@ logmuse>=0.2.0
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  pandas>=2.0.2
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  pephubclient>=0.4.0
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  pipestat>=0.9.2
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- peppy>=0.40.2
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+ peppy<=0.40.2,>=0.40.0
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  pyyaml>=3.12
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  rich>=9.10.0
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  ubiquerg>=0.8.1a1
{looper-1.9.0 → looper-1.9.1}/requirements/requirements-all.txt RENAMED
@@ -6,7 +6,7 @@ logmuse>=0.2.0
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  pandas>=2.0.2
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  pephubclient>=0.4.0
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  pipestat>=0.9.2
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- peppy>=0.40.2
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+ peppy>=0.40.0,<=0.40.2
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  pyyaml>=3.12
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  rich>=9.10.0
12
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  ubiquerg>=0.8.1a1
{looper-1.9.0 → looper-1.9.1}/LICENSE.txt RENAMED
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{looper-1.9.0 → looper-1.9.1}/MANIFEST.in RENAMED
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{looper-1.9.0 → looper-1.9.1}/README.md RENAMED
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{looper-1.9.0 → looper-1.9.1}/logo_looper.svg RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/__init__.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/__main__.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/cli_divvy.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/conductor.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/const.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/divvy.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/exceptions.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/looper.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/parser_types.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/plugins.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/project.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/looper/utils.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/setup.cfg RENAMED
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{looper-1.9.0 → looper-1.9.1}/setup.py RENAMED
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{looper-1.9.0 → looper-1.9.1}/tests/test_clean.py RENAMED
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