lispyn 0.17.0a1__tar.gz

lispyn-0.17.0a1/LICENSE

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lispyn-0.17.0a1/MANIFEST.in

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+include README.md LICENSE NOTICE
+recursive-include src/lispyn *.hy
+prune example_generated_notebooks
+prune examples
+prune docs
+prune .github

lispyn-0.17.0a1/NOTICE

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+Lispyn
+Copyright 2026 Eduardo J. Barrios
+
+Lispyn was originally created by Eduardo J. Barrios.
+This NOTICE is supplied under Section 4(d) of the Apache License, Version 2.0.
+See LICENSE for the full license terms.

lispyn-0.17.0a1/PKG-INFO

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+Metadata-Version: 2.4
+Name: lispyn
+Version: 0.17.0a1
+Summary: Lisp-powered PyTorch experiments and Jupyter notebooks, built on Hy.
+Author: Eduardo J. Barrios
+License-Expression: Apache-2.0
+Project-URL: Homepage, https://github.com/edujbarrios/lispyn
+Project-URL: Repository, https://github.com/edujbarrios/lispyn
+Project-URL: Issues, https://github.com/edujbarrios/lispyn/issues
+Project-URL: Documentation, https://github.com/edujbarrios/lispyn/blob/main/docs/guide.md
+Keywords: lisp,hy,jupyter,pytorch,notebooks,machine-learning
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+License-File: NOTICE
+Requires-Dist: hy<2.0,>=1.0
+Requires-Dist: nbformat<6,>=5.8
+Requires-Dist: packaging>=23
+Provides-Extra: notebook
+Requires-Dist: nbclient<1,>=0.9; extra == "notebook"
+Requires-Dist: ipykernel>=6; extra == "notebook"
+Provides-Extra: data
+Requires-Dist: pandas>=2; extra == "data"
+Provides-Extra: vision
+Requires-Dist: torch; extra == "vision"
+Requires-Dist: torchvision; extra == "vision"
+Requires-Dist: pillow; extra == "vision"
+Provides-Extra: audio
+Requires-Dist: torch; extra == "audio"
+Requires-Dist: torchaudio; extra == "audio"
+Requires-Dist: torchcodec; extra == "audio"
+Provides-Extra: text
+Requires-Dist: torch; extra == "text"
+Provides-Extra: peft
+Requires-Dist: peft>=0.15; extra == "peft"
+Requires-Dist: transformers<5,>=4.45; extra == "peft"
+Provides-Extra: plots
+Requires-Dist: matplotlib>=3.8; extra == "plots"
+Provides-Extra: dev
+Requires-Dist: pytest>=8; extra == "dev"
+Requires-Dist: nbclient<1,>=0.9; extra == "dev"
+Requires-Dist: ipykernel>=6; extra == "dev"
+Dynamic: license-file
+
+# Lispyn
+
+[![PyPI version](https://img.shields.io/pypi/v/lispyn.svg)](https://pypi.org/project/lispyn/) [![Python versions](https://img.shields.io/pypi/pyversions/lispyn.svg)](https://pypi.org/project/lispyn/) [![PyPI downloads](https://img.shields.io/pypi/dm/lispyn.svg)](https://pypi.org/project/lispyn/) [![CI](https://github.com/edujbarrios/lispyn/actions/workflows/tests.yml/badge.svg)](https://github.com/edujbarrios/lispyn/actions/workflows/tests.yml) [![License](https://img.shields.io/pypi/l/lispyn.svg)](https://github.com/edujbarrios/lispyn/blob/main/LICENSE)
+
+**Write complex experiments. Make them easy to understand, reuse, and share.**
+
+Great experiments deserve to be understood—not just executed. Whether you're exploring new AI models, fine-tuning neural networks, or running advanced training pipelines, you often need to **show others what you built, how it works, and what you learned**.
+
+**Lispyn** uses Lisp-based [Hy](https://hylang.org/) macros to turn repetitive steps into **concise, reusable building blocks**. Prepare datasets, train with PyTorch, document your choices in Markdown, and generate plots—all from a readable Lisp source that becomes a standard **Python Jupyter notebook**.
+
+Spend less time rewriting boilerplate and more time experimenting. When your dataset, model, or training strategy changes, adapt the macro and reuse the workflow. **Lisp for expressive experiments. Python for the ecosystem. Jupyter for sharing results.**
+
+## Quick installation
+
+Install Lispyn directly from [PyPI](https://pypi.org/project/lispyn/):
+
+```bash
+python -m pip install lispyn
+
+# Recommended for notebooks and Matplotlib plots
+python -m pip install "lispyn[notebook,plots]"
+
+# Check your current Python and available dependencies
+lispyn doctor
+```
+
+Lispyn needs **Python 3.10+**. Basic installation includes Hy, so you can
+import and use standard Python modules immediately. PyTorch, TorchVision,
+and GPU-specific libraries are optional; install compatible versions for
+your hardware before running AI training examples.
+
+## Your first Lispyn notebook
+
+Create a file named `hello.hy`:
+
+```hy
+(require lispyn.macros [md])
+(md "# My first Lispyn experiment"
+    "Synthetic training curves, generated with reusable Lisp macros.")
+
+(require lispyn.macros [defcurve])
+(setv history {"train_loss" [1.4 1.0 0.7 0.5]
+               "val_loss" [1.5 1.2 0.9 0.75]})
+(defcurve my-style :theme "docusaurus-dark"
+  :palette "turquoise-spectrum")
+(my-style history :metric "loss"
+  :title "Training curves" :save "training.png")
+```
+
+Then run:
+
+```bash
+# Translate Lispyn/Hy into ordinary Python Jupyter cells
+lispyn build hello.hy
+
+# Execute the notebook, keeping its real outputs
+lispyn execute hello.hy
+
+# Or run a Hy file directly (without creating a notebook)
+lispyn run hello.hy
+```
+
+`hello.ipynb` is a standard Jupyter notebook with real Markdown and Python
+cells. The synthetic graph is written to `training.png`. All plots are
+generated with Matplotlib; no new language interpreter or special kernel
+is needed. After a Markdown cell, repeat `(require lispyn.macros [...])`
+for any macros used in a later cell because Hy code cells compile independently.
+
+**Developing Lispyn itself?** Clone the repository and use
+`python -m pip install -e ".[dev,notebook,plots]"` instead.
+See the [technical guide](https://github.com/edujbarrios/lispyn/blob/main/docs/guide.md)
+and [release instructions](https://github.com/edujbarrios/lispyn/blob/main/docs/releasing.md).
+## Matplotlib with reusable Lisp macros
+
+Define a design once and apply it to any recorded history. This short example
+uses a dark gray background inspired by Docusaurus and the seven-color
+**turquoise-spectrum** palette:
+
+```hy
+(require lispyn.macros [defcurve compare-curves])
+(setv history {"train_loss" [1.5 1.1 0.8 0.55]
+               "val_loss" [1.6 1.2 0.95 0.76]})
+(defcurve turquoise-dark
+  :theme "docusaurus-dark"
+  :palette "turquoise-spectrum"
+  :train-color "#40E0D0" :val-color "#8CF0EB"
+  :title-size 18 :line-width 2.8 :fill-alpha 0.08)
+(turquoise-dark history
+  :metric "loss" :title "Training dynamics"
+  :subtitle "Synthetic example · 4 epochs"
+  :save "training.png")
+```
+
+**Generated from Lispyn + Matplotlib using synthetic values, not a trained model.**
+
+![Turquoise training and validation lines on a Docusaurus-like dark gray background](https://raw.githubusercontent.com/edujbarrios/lispyn/main/docs/images/synthetic_training_curves.png)
+
+The same Lisp file can compare several named runs, automatically assigning
+distinct colors from the palette:
+
+![Three synthetic validation curves in turquoise on a dark gray background](https://raw.githubusercontent.com/edujbarrios/lispyn/main/docs/images/synthetic_comparison_curves.png)
+
+Full reproducible source: [synthetic_curves.hy](https://github.com/edujbarrios/lispyn/blob/main/examples/synthetic_curves.hy)
+· [generated Jupyter notebook](https://github.com/edujbarrios/lispyn/blob/main/example_generated_notebooks/synthetic_curves.ipynb).
+Regenerate the figures with `lispyn run examples/synthetic_curves.hy`.
+
+Classification reports are equally concise: the new `defconfusion` macro
+creates a reusable dark-themed confusion matrix from actual and predicted labels.
+See the [Lisp example](https://github.com/edujbarrios/lispyn/blob/main/examples/confusion_matrix.hy)
+and its [generated figure](https://github.com/edujbarrios/lispyn/blob/main/docs/images/synthetic_confusion_matrix.png).
+The example uses **synthetic class labels**, not real model predictions.
+
+## Train smarter with one Lisp macro
+
+Long PyTorch experiments can stop when a selected validation metric stops
+improving. The new `train-until` macro handles this policy while keeping
+checkpoints, histories, and the exact number of completed epochs:
+
+```hy
+(require lispyn.macros [train-until])
+(setv run
+  (train-until model training-data 8
+    :validation validation-data
+    :loss-fn loss-function
+    :epochs 300
+    :min-delta 0.0005
+    :experiment-dir "runs/experiment"))
+```
+
+`300` is the maximum: if the monitored loss does not improve by more
+than `min-delta` for eight consecutive epochs, training stops early.
+With an experiment directory, the run records `best.pt`, `last.pt`,
+`history.json`, and a summary of the completed epochs in `manifest.json`.
+The model returned by the run remains at the **last** epoch; the best
+weights can be restored explicitly with `load_checkpoint`.
+
+Try the [offline early-stopping notebook](https://github.com/edujbarrios/lispyn/blob/main/example_generated_notebooks/early_stopping.ipynb)
+or its [Lisp source](https://github.com/edujbarrios/lispyn/blob/main/examples/early_stopping.hy).
+
+## Full experiment — ResNet18, two-stage fine-tuning
+
+The following is the complete source of [`examples/resnet_finetune_300.hy`](https://github.com/edujbarrios/lispyn/blob/main/examples/resnet_finetune_300.hy), including its Markdown cells. Put your images in `examples/data/resnet_images/<class_name>/*.jpg` (or `.png`); each class needs multiple images. The first stage trains the classifier for **10 epochs**, then the second unfreezes all layers for **300 epochs**.
+
+```clojure
+; ResNet18 experiment: all results are Python/Jupyter notebook cells.
+; Required actual images: examples/data/resnet_images/class_name/*.jpg or *.png
+; This source is NOT executed in CI (300 epochs need a real dataset/GPU).
+(require lispyn.macros [md])
+
+(md "# ResNet18 — transfer learning + full fine-tuning"
+    "An end-to-end **PyTorch** experiment written in Lispyn. It loads labeled images, splits by class, runs head-only tuning, then unfreezes the backbone for **300 epochs**, and produces publication-ready curves."
+    "**Author:** Eduardo J. Barrios · **Source:** Lispyn.")
+
+(md "## Install required libraries"
+    "The **pip-install** macro generates a dedicated Python notebook setup cell. Already available packages report *Requirement already installed in this environment*; only missing packages are installed in the current kernel."
+    "Python standard-library modules such as `math` need no installation. For CUDA/accelerator setups, install matching PyTorch/TorchVision builds beforehand. Installing native packages may require a kernel restart.")
+
+(require lispyn.macros [pip-install])
+(pip-install "torch" "torchvision" "matplotlib>=3.8")
+
+(require lispyn.macros [use-package])
+(setv math (use-package "math" :install False))
+(print "math.sqrt(16):" (math.sqrt 16))
+
+(md "## Load and split the image dataset"
+    "Use the original TorchVision preprocessing for the pretrained ResNet18 weights. Classes come from your own image folders; samples are split reproducibly into training and validation.")
+(import torch)
+(import torchvision)
+(import lispyn.media [image-folder])
+(import lispyn.data [split-dataset])
+(import lispyn.reproducibility [seed-all])
+
+(seed-all 42)
+(setv weights torchvision.models.ResNet18_Weights.DEFAULT)
+(setv dataset (image-folder "data/resnet_images" :transform (weights.transforms)))
+(setv groups (split-dataset dataset :stratify True :validation-fraction 0.2 :seed 42))
+(setv training (get groups 0))
+(setv validation (get groups 1))
+(setv model (torchvision.models.resnet18 :weights weights))
+(setv model.fc (torch.nn.Linear model.fc.in_features (len dataset.classes)))
+(print "Classes:" dataset.classes)
+(print "Train/validation:" (len training) (len validation))
+
+(md "## Phase 1 — classifier fine-tuning"
+    "Freeze the pretrained ResNet18 backbone and optimize only `model.fc` for **10 epochs**. The class split is reproducible and separate from the training set."
+    "**Note:** This example needs at least two labeled images per class. For correlated images from the same subject, use a *group-aware split* instead.")
+
+(require lispyn.macros [head-tune])
+(setv head-run
+  (head-tune model training "fc"
+    :validation validation
+    :loss-fn (torch.nn.CrossEntropyLoss)
+    :epochs 10
+    :batch-size 16
+    :lr 0.001
+    :seed 42
+    :metrics "accuracy"
+    :experiment-dir "runs/resnet/head"))
+(print "Head validation accuracy:" (get head-run.history "val_accuracy"))
+
+(md "## Phase 2 — deep/full fine-tuning: 300 epochs"
+    "Unfreeze **every ResNet18 layer**, create a new optimizer with a smaller learning rate, and train for **300 epochs**. This is full fine-tuning of pretrained weights, **not** training from scratch."
+    "A real 300-epoch run may take hours and require a GPU. Run it only with your own dataset and appropriate resources.")
+
+(require lispyn.macros [full-tune])
+(setv deep-run
+  (full-tune head-run.model training
+    :validation validation
+    :loss-fn (torch.nn.CrossEntropyLoss)
+    :epochs 300
+    :batch-size 16
+    :lr 0.00001
+    :seed 42
+    :metrics "accuracy"
+    :experiment-dir "runs/resnet/deep"))
+(print "Full tuning best accuracy:" (max (get deep-run.history "val_accuracy")))
+
+(md "## Curves and export"
+    "Use one Lisp macro to define a consistent Matplotlib style for **both** training curves. The best checkpoints and JSON histories are saved under `runs/resnet/`.")
+
+(require lispyn.macros [defcurve])
+(defcurve resnet-curve
+  :theme "paper"
+  :train-color "#2563EB"
+  :val-color "#D97706"
+  :xlabel "Epoch"
+  :train-label "Train"
+  :val-label "Validation"
+  :figsize [9 4])
+
+(resnet-curve deep-run :metric "loss"
+  :title "ResNet18 — 300-epoch loss"
+  :ylabel "Cross-entropy loss"
+  :save "runs/resnet/deep/loss.png")
+
+(resnet-curve deep-run :metric "accuracy"
+  :title "ResNet18 — 300-epoch accuracy"
+  :ylabel "Top-1 accuracy"
+  :save "runs/resnet/deep/accuracy.png")
+(print "Saved ResNet18 plots, histories, and best checkpoints.")
+```
+
+## Generated notebook
+
+**[Open the generated ResNet18 notebook](https://github.com/edujbarrios/lispyn/blob/main/example_generated_notebooks/resnet_finetune_300.ipynb)** in [`example_generated_notebooks/`](https://github.com/edujbarrios/lispyn/tree/main/example_generated_notebooks/). It contains real Markdown and translated Python code cells, but **no simulated losses or training outputs**. Use `lispyn gallery` to regenerate the examples without running training.
+
+To install Lispyn from this repository, use `python -m pip install -e ".[notebook,plots]"`. Run `lispyn build examples/resnet_finetune_300.hy` to regenerate the notebook, or `lispyn execute examples/resnet_finetune_300.hy -o example_generated_notebooks/resnet_finetune_300.ipynb` to **actually train** and save the outputs.
+
+The `pip-install` macro creates a dedicated dependency cell that checks availability when the notebook **runs**, not when it compiles. Available packages print *Requirement already installed in this environment*. Missing named packages can be installed through the notebook kernel’s Python interpreter. Python's standard-library `math` module requires no pip install. GPU-compatible PyTorch builds should normally be installed separately in advance; installing packages into a running kernel may require a restart.
+
+**This experiment has not been trained for 300 epochs in CI.** It needs an image dataset and may require substantial compute. Stratified sample-level splitting is not group-aware; use a grouped split when images come from the same subjects, patients or sessions.
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+More capabilities, examples and package options are in the [technical guide](https://github.com/edujbarrios/lispyn/blob/main/docs/guide.md). Created by **Eduardo J. Barrios**. Apache-2.0 licensed; see [LICENSE](https://github.com/edujbarrios/lispyn/blob/main/LICENSE) and [NOTICE](https://github.com/edujbarrios/lispyn/blob/main/NOTICE).