lisaanalysistools 1.0.3__tar.gz → 1.0.5__tar.gz

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5/LISAanalysistools.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lisaanalysistools
-Version: 1.0.3
+Version: 1.0.5
 Home-page: https://github.com/mikekatz04/lisa-on-gpu
 Author: Michael Katz
 Author-email: mikekatz04@gmail.com
@@ -18,8 +18,9 @@ License-File: LICENSE
 # LISA Analysis Tools
 
 [![Doc badge](https://img.shields.io/badge/Docs-master-brightgreen)](https://mikekatz04.github.io/LISAanalysistools)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10930980.svg)](https://doi.org/10.5281/zenodo.10930980)
 
-LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit. 
+LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit.  
 
 ## 1 - Getting Started
 
@@ -59,16 +60,15 @@ Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduc
 
 We use [SemVer](http://semver.org/) for versioning. For the versions available, see the [tags on this repository](https://github.com/BlackHolePerturbationToolkit/FastEMRIWaveforms/tags).
 
-Current Version: 1.0.3
+Current Version: 1.0.5
 
 ## Authors/Developers
 
 * **Michael Katz**
-
-### Contibutors
-
 * Lorenzo Speri
 * Christian Chapman-Bird
+* Natalia Korsakova
+* Nikos Karnesis
 
 ## License
 
@@ -76,5 +76,20 @@ This project is licensed under the Apache License - see the [LICENSE.md](LICENSE
 
 ## Citation
 
-TODO.
+```
+@software{michael_katz_2024_10930980,
+  author       = {Michael Katz and
+                  CChapmanbird and
+                  Lorenzo Speri and
+                  Nikolaos Karnesis and
+                  Korsakova, Natalia},
+  title        = {mikekatz04/LISAanalysistools: First main release.},
+  month        = apr,
+  year         = 2024,
+  publisher    = {Zenodo},
+  version      = {v1.0.3},
+  doi          = {10.5281/zenodo.10930980},
+  url          = {https://doi.org/10.5281/zenodo.10930980}
+}
+```
 

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/LISAanalysistools.egg-info/SOURCES.txt

@@ -4,11 +4,6 @@ MANIFEST.in
 Makefile
 README.md
 pyproject.toml
-requirements-data.txt
-requirements-demo.txt
-requirements-dev.txt
-requirements-release.txt
-requirements.txt
 setup.py
 LISAanalysistools.egg-info/PKG-INFO
 LISAanalysistools.egg-info/SOURCES.txt
@@ -26,7 +21,6 @@ lisatools/analysiscontainer.py
 lisatools/datacontainer.py
 lisatools/detector.py
 lisatools/diagnostic.py
-lisatools/glitch.py
 lisatools/sensitivity.py
 lisatools/stochastic.py
 lisatools/sampling/__init__.py
@@ -35,20 +29,12 @@ lisatools/sampling/prior.py
 lisatools/sampling/stopping.py
 lisatools/sampling/utility.py
 lisatools/sampling/moves/__init__.py
-lisatools/sampling/moves/gbgroupstretch.py
-lisatools/sampling/moves/gbmultipletryrj.py
-lisatools/sampling/moves/gbspecialgroupstretch.py
-lisatools/sampling/moves/gbspecialstretch.py
-lisatools/sampling/moves/mbhspecialmove.py
-lisatools/sampling/moves/placeholder.py
 lisatools/sampling/moves/skymodehop.py
-lisatools/sampling/moves/specialforegroundmove.py
 lisatools/sources/__init__.py
 lisatools/sources/emri/__init__.py
 lisatools/sources/emri/tdiwaveform.py
 lisatools/utils/__init__.py
 lisatools/utils/constants.py
-lisatools/utils/multigpudataholder.py
 lisatools/utils/pointeradjust.py
 lisatools/utils/utility.py
 scripts/data_download.py

{lisaanalysistools-1.0.3/LISAanalysistools.egg-info → lisaanalysistools-1.0.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lisaanalysistools
-Version: 1.0.3
+Version: 1.0.5
 Home-page: https://github.com/mikekatz04/lisa-on-gpu
 Author: Michael Katz
 Author-email: mikekatz04@gmail.com
@@ -18,8 +18,9 @@ License-File: LICENSE
 # LISA Analysis Tools
 
 [![Doc badge](https://img.shields.io/badge/Docs-master-brightgreen)](https://mikekatz04.github.io/LISAanalysistools)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10930980.svg)](https://doi.org/10.5281/zenodo.10930980)
 
-LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit. 
+LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit.  
 
 ## 1 - Getting Started
 
@@ -59,16 +60,15 @@ Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduc
 
 We use [SemVer](http://semver.org/) for versioning. For the versions available, see the [tags on this repository](https://github.com/BlackHolePerturbationToolkit/FastEMRIWaveforms/tags).
 
-Current Version: 1.0.3
+Current Version: 1.0.5
 
 ## Authors/Developers
 
 * **Michael Katz**
-
-### Contibutors
-
 * Lorenzo Speri
 * Christian Chapman-Bird
+* Natalia Korsakova
+* Nikos Karnesis
 
 ## License
 
@@ -76,5 +76,20 @@ This project is licensed under the Apache License - see the [LICENSE.md](LICENSE
 
 ## Citation
 
-TODO.
+```
+@software{michael_katz_2024_10930980,
+  author       = {Michael Katz and
+                  CChapmanbird and
+                  Lorenzo Speri and
+                  Nikolaos Karnesis and
+                  Korsakova, Natalia},
+  title        = {mikekatz04/LISAanalysistools: First main release.},
+  month        = apr,
+  year         = 2024,
+  publisher    = {Zenodo},
+  version      = {v1.0.3},
+  doi          = {10.5281/zenodo.10930980},
+  url          = {https://doi.org/10.5281/zenodo.10930980}
+}
+```
 

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/README.md

@@ -1,8 +1,9 @@
 # LISA Analysis Tools
 
 [![Doc badge](https://img.shields.io/badge/Docs-master-brightgreen)](https://mikekatz04.github.io/LISAanalysistools)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10930980.svg)](https://doi.org/10.5281/zenodo.10930980)
 
-LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit. 
+LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit.  
 
 ## 1 - Getting Started
 
@@ -42,16 +43,15 @@ Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduc
 
 We use [SemVer](http://semver.org/) for versioning. For the versions available, see the [tags on this repository](https://github.com/BlackHolePerturbationToolkit/FastEMRIWaveforms/tags).
 
-Current Version: 1.0.3
+Current Version: 1.0.5
 
 ## Authors/Developers
 
 * **Michael Katz**
-
-### Contibutors
-
 * Lorenzo Speri
 * Christian Chapman-Bird
+* Natalia Korsakova
+* Nikos Karnesis
 
 ## License
 
@@ -59,5 +59,20 @@ This project is licensed under the Apache License - see the [LICENSE.md](LICENSE
 
 ## Citation
 
-TODO.
+```
+@software{michael_katz_2024_10930980,
+  author       = {Michael Katz and
+                  CChapmanbird and
+                  Lorenzo Speri and
+                  Nikolaos Karnesis and
+                  Korsakova, Natalia},
+  title        = {mikekatz04/LISAanalysistools: First main release.},
+  month        = apr,
+  year         = 2024,
+  publisher    = {Zenodo},
+  version      = {v1.0.3},
+  doi          = {10.5281/zenodo.10930980},
+  url          = {https://doi.org/10.5281/zenodo.10930980}
+}
+```
 

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/lisatools/_version.py

@@ -1,4 +1,4 @@
-__version__ = '1.0.3'
+__version__ = '1.0.5'
 __copyright__ = "Michael L. Katz 2024"
 __name__ = "lisaanalysistools"
 __author__ = "Michael L. Katz"

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/lisatools/analysiscontainer.py

@@ -1,13 +1,17 @@
+from __future__ import annotations
+
+
 import warnings
 from abc import ABC
 from typing import Any, Tuple, Optional, List
 
 import math
 import numpy as np
-from numpy.typing import ArrayLike
+
 from scipy import interpolate
 import matplotlib.pyplot as plt
 
+
 try:
     import cupy as cp
 
@@ -209,7 +213,7 @@ class AnalysisContainer:
         template: DataResidualArray,
         include_psd_info: bool = False,
         phase_maximize: bool = False,
-        **kwargs: dict
+        **kwargs: dict,
     ) -> float:
         """Calculate the Likelihood of a template against the data.
 
@@ -278,11 +282,11 @@ class AnalysisContainer:
     def _calculate_signal_operation(
         self,
         calc: str,
-        *args: ArrayLike,
+        *args: Any,
         source_only: bool = False,
         waveform_kwargs: Optional[dict] = {},
         data_res_arr_kwargs: Optional[dict] = {},
-        **kwargs: dict
+        **kwargs: dict,
     ) -> float | complex:
         """Return the likelihood of a generated signal with the data.
 
@@ -328,11 +332,11 @@ class AnalysisContainer:
 
     def calculate_signal_likelihood(
         self,
-        *args: ArrayLike,
+        *args: Any,
         source_only: bool = False,
         waveform_kwargs: Optional[dict] = {},
         data_res_arr_kwargs: Optional[dict] = {},
-        **kwargs: dict
+        **kwargs: dict,
     ) -> float | complex:
         """Return the likelihood of a generated signal with the data.
 
@@ -355,16 +359,16 @@ class AnalysisContainer:
             source_only=source_only,
             waveform_kwargs=waveform_kwargs,
             data_res_arr_kwargs=data_res_arr_kwargs,
-            **kwargs
+            **kwargs,
         )
 
     def calculate_signal_inner_product(
         self,
-        *args: ArrayLike,
+        *args: Any,
         source_only: bool = False,
         waveform_kwargs: Optional[dict] = {},
         data_res_arr_kwargs: Optional[dict] = {},
-        **kwargs: dict
+        **kwargs: dict,
     ) -> float | complex:
         """Return the inner product of a generated signal with the data.
 
@@ -387,16 +391,16 @@ class AnalysisContainer:
             source_only=source_only,
             waveform_kwargs=waveform_kwargs,
             data_res_arr_kwargs=data_res_arr_kwargs,
-            **kwargs
+            **kwargs,
         )
 
     def calculate_signal_snr(
         self,
-        *args: ArrayLike,
+        *args: Any,
         source_only: bool = False,
         waveform_kwargs: Optional[dict] = {},
         data_res_arr_kwargs: Optional[dict] = {},
-        **kwargs: dict
+        **kwargs: dict,
     ) -> Tuple[float, float]:
         """Return the SNR of a generated signal with the data.
 
@@ -419,7 +423,7 @@ class AnalysisContainer:
             source_only=source_only,
             waveform_kwargs=waveform_kwargs,
             data_res_arr_kwargs=data_res_arr_kwargs,
-            **kwargs
+            **kwargs,
         )
 
     def eryn_likelihood_function(self, x, *args, **kwargs):

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/lisatools/datacontainer.py

@@ -4,7 +4,6 @@ from typing import Any, Tuple, Optional, List
 
 import math
 import numpy as np
-from numpy.typing import ArrayLike
 from scipy import interpolate
 import matplotlib.pyplot as plt
 
@@ -36,7 +35,7 @@ class DataResidualArray:
         sens_mat: Input sensitivity list. The shape of the nested lists should represent the shape of the
             desired matrix. Each entry in the list must be an array, :class:`Sensitivity`-derived object,
             or a string corresponding to the :class:`Sensitivity` object.
-        **sens_kwargs: Keyword arguments to pass to :method:`Sensitivity.get_Sn`.
+        **sens_kwargs: Keyword arguments to pass to :func:`Sensitivity.get_Sn`.
 
     """
 

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/lisatools/detector.py

@@ -443,7 +443,7 @@ class LISAModel(LISAModelSettings, ABC):
 scirdv1 = LISAModel((15.0e-12) ** 2, (3.0e-15) ** 2, DefaultOrbits(), "scirdv1")
 proposal = LISAModel((10.0e-12) ** 2, (3.0e-15) ** 2, DefaultOrbits(), "proposal")
 mrdv1 = LISAModel((10.0e-12) ** 2, (2.4e-15) ** 2, DefaultOrbits(), "mrdv1")
-sangria = LISAModel((10.0e-12) ** 2, (2.4e-15) ** 2, DefaultOrbits(), "sangria")
+sangria = LISAModel((7.9e-12) ** 2, (2.4e-15) ** 2, DefaultOrbits(), "sangria")
 
 __stock_list_models__ = [scirdv1, proposal, mrdv1, sangria]
 __stock_list_models_name__ = [tmp.name for tmp in __stock_list_models__]

{lisaanalysistools-1.0.3 → lisaanalysistools-1.0.5}/lisatools/diagnostic.py

@@ -2,7 +2,6 @@ import warnings
 from types import ModuleType, NoneType
 from typing import Optional, Any, Tuple, List
 
-from numpy.typing import ArrayLike
 import matplotlib.pyplot as plt
 
 from eryn.utils import TransformContainer
@@ -387,7 +386,7 @@ def snr(
 def h_var_p_eps(
     step: float,
     waveform_model: callable,
-    params: ArrayLike,
+    params: np.ndarray | list,
     index: int,
     parameter_transforms: Optional[TransformContainer] = None,
     waveform_args: Optional[tuple] = (),
@@ -499,8 +498,8 @@ def dh_dlambda(
 def info_matrix(
     eps: float | np.ndarray,
     waveform_model: callable,
-    params: ArrayLike,
-    deriv_inds: Optional[ArrayLike] = None,
+    params: np.ndarray | list,
+    deriv_inds: Optional[np.ndarray | list] = None,
     inner_product_kwargs: Optional[dict] = {},
     return_derivs: Optional[bool] = False,
     **kwargs: dict,
@@ -793,7 +792,7 @@ def cutler_vallisneri_bias(
     eps: float | np.ndarray,
     input_diagnostics: Optional[dict] = None,
     info_mat: Optional[np.ndarray] = None,
-    deriv_inds: Optional[ArrayLike] = None,
+    deriv_inds: Optional[np.ndarray | list] = None,
     return_derivs: Optional[bool] = False,
     return_cov: Optional[bool] = False,
     parameter_transforms: Optional[TransformContainer] = None,