lionagi 0.12.4__tar.gz → 0.12.5__tar.gz

{lionagi-0.12.4 → lionagi-0.12.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: lionagi
-Version: 0.12.4
+Version: 0.12.5
 Summary: An Intelligence Operating System.
 Author-email: HaiyangLi <quantocean.li@gmail.com>, Liangbingyan Luo <llby_luo@outlook.com>
 License:            Apache License
@@ -223,10 +223,9 @@ Requires-Dist: aiocache>=0.12.0
 Requires-Dist: aiohttp>=3.12.0
 Requires-Dist: backoff>=2.2.1
 Requires-Dist: jinja2>=3.1.0
-Requires-Dist: pandas>=2.0.0
 Requires-Dist: pillow>=11.0.0
 Requires-Dist: pydantic-settings>=2.8.0
-Requires-Dist: pydantic>2.0.0
+Requires-Dist: pydapter[pandas]>=0.3.0
 Requires-Dist: python-dotenv>=1.1.0
 Requires-Dist: tiktoken>=0.8.0
 Requires-Dist: toml>=0.9.0

{lionagi-0.12.4 → lionagi-0.12.5}/lionagi/protocols/generic/pile.py

@@ -5,6 +5,7 @@
 from __future__ import annotations
 
 import asyncio
+import json
 import threading
 from collections import deque
 from collections.abc import (
@@ -21,18 +22,13 @@ from typing import Any, ClassVar, Generic, TypeVar
 import pandas as pd
 from pydantic import Field
 from pydantic.fields import FieldInfo
+from pydapter import Adapter, AdapterRegistry
+from pydapter.adapters import CsvAdapter, JsonAdapter
+from pydapter.extras.excel_ import ExcelAdapter
+from pydapter.extras.pandas_ import DataFrameAdapter
 from typing_extensions import Self, override
 
 from lionagi._errors import ItemExistsError, ItemNotFoundError
-from lionagi.adapters.types import (
-    Adapter,
-    AdapterRegistry,
-    CSVFileAdapter,
-    ExcelFileAdapter,
-    JsonAdapter,
-    JsonFileAdapter,
-    PandasDataFrameAdapter,
-)
 from lionagi.utils import UNDEFINED, is_same_dtype, to_list
 
 from .._concepts import Observable
@@ -45,10 +41,9 @@ T = TypeVar("T", bound=E)
 
 PILE_DEFAULT_ADAPTERS = (
     JsonAdapter,
-    JsonFileAdapter,
-    CSVFileAdapter,
-    ExcelFileAdapter,
-    PandasDataFrameAdapter,
+    CsvAdapter,
+    ExcelAdapter,
+    DataFrameAdapter,
 )
 
 
@@ -56,8 +51,9 @@ class PileAdapterRegistry(AdapterRegistry):
     pass
 
 
+pile_adapter_registry = PileAdapterRegistry()
 for i in PILE_DEFAULT_ADAPTERS:
-    PileAdapterRegistry.register(i)
+    pile_adapter_registry.register(i)
 
 
 __all__ = (
@@ -117,7 +113,7 @@ class Pile(Element, Collective[E], Generic[E]):
         frozen=True,
     )
 
-    _adapter_registry: ClassVar[AdapterRegistry] = PileAdapterRegistry
+    _adapter_registry: ClassVar[AdapterRegistry] = pile_adapter_registry
 
     def __pydantic_extra__(self) -> dict[str, FieldInfo]:
         return {
@@ -966,12 +962,25 @@ class Pile(Element, Collective[E], Generic[E]):
 
     def adapt_to(self, obj_key: str, /, **kwargs: Any) -> Any:
         """Convert to another format."""
-        return self._get_adapter_registry().adapt_to(self, obj_key, **kwargs)
+        # For JSON adapter, we need to pass the dict representation
+        if obj_key in ["json", "csv", "toml"]:
+            data = self.to_dict()
 
-    @classmethod
-    def list_adapters(cls):
-        """List available adapters."""
-        return cls._get_adapter_registry().list_adapters()
+            # Create a simple object that has model_dump method
+            class _Wrapper:
+                def __init__(self, data):
+                    self._data = data
+
+                def model_dump(self):
+                    return self._data
+
+            wrapper = _Wrapper(data)
+            return self._get_adapter_registry().adapt_to(
+                wrapper, obj_key=obj_key, **kwargs
+            )
+        return self._get_adapter_registry().adapt_to(
+            self, obj_key=obj_key, **kwargs
+        )
 
     @classmethod
     def register_adapter(cls, adapter: type[Adapter]):
@@ -988,7 +997,7 @@ class Pile(Element, Collective[E], Generic[E]):
     def adapt_from(cls, obj: Any, obj_key: str, /, **kwargs: Any):
         """Create from another format."""
         dict_ = cls._get_adapter_registry().adapt_from(
-            cls, obj, obj_key, **kwargs
+            cls, obj, obj_key=obj_key, **kwargs
         )
         if isinstance(dict_, list):
             dict_ = {"collections": dict_}
@@ -1000,11 +1009,31 @@ class Pile(Element, Collective[E], Generic[E]):
         **kwargs: Any,
     ) -> pd.DataFrame:
         """Convert to DataFrame."""
-        return self.adapt_to("pd_dataframe", columns=columns, **kwargs)
+        # For DataFrame, we need to pass a list of dicts
+        data = [item.to_dict() for item in self.collections.values()]
+
+        # Create wrapper objects for each item
+        class _ItemWrapper:
+            def __init__(self, data):
+                self._data = data
+
+            def model_dump(self):
+                return self._data
+
+        wrappers = [_ItemWrapper(d) for d in data]
+        df = self._get_adapter_registry().adapt_to(
+            wrappers, obj_key="pd.DataFrame", many=True, **kwargs
+        )
+
+        if columns:
+            return df[columns]
+        return df
 
     def to_csv_file(self, fp: str | Path, **kwargs: Any) -> None:
         """Save to CSV file."""
-        self.adapt_to(".csv", fp=fp, **kwargs)
+        # Convert to DataFrame first, then save as CSV
+        df = self.to_df()
+        df.to_csv(fp, index=False, **kwargs)
 
     def to_json_file(
         self,
@@ -1025,8 +1054,14 @@ class Pile(Element, Collective[E], Generic[E]):
             **kwargs: Additional arguments for json.dump() or DataFrame.to_json().
         """
         if use_pd:
-            return self.to_df().to_json(mode=mode, **kwargs)
-        return self.adapt_to(".json", fp=path_or_buf, mode=mode, many=many)
+            return self.to_df().to_json(path_or_buf, mode=mode, **kwargs)
+
+        # Get JSON string from adapter
+        json_str = self.adapt_to("json", many=many, **kwargs)
+
+        # Write to file
+        with open(path_or_buf, mode, encoding="utf-8") as f:
+            f.write(json_str)
 
 
 def pile(
@@ -1052,16 +1087,28 @@ def pile(
     """
 
     if df:
-        return Pile.adapt_from(df, "pd_dataframe", **kwargs)
+        return Pile.adapt_from(df, "pd.DataFrame", **kwargs)
 
     if fp:
         fp = Path(fp)
         if fp.suffix == ".csv":
-            return Pile.adapt_from(fp, ".csv", **kwargs)
+            # Read CSV to DataFrame first
+            df = pd.read_csv(fp, **kwargs)
+            return Pile.adapt_from(df, "pd.DataFrame")
         if fp.suffix == ".xlsx":
-            return Pile.adapt_from(fp, ".xlsx", **kwargs)
+            # Read Excel to DataFrame first
+            df = pd.read_excel(fp, **kwargs)
+            return Pile.adapt_from(df, "pd.DataFrame")
         if fp.suffix in [".json", ".jsonl"]:
-            return Pile.adapt_from(fp, ".json", **kwargs)
+            # Read JSON file
+            with open(fp, encoding="utf-8") as f:
+                data = json.load(f)
+            if isinstance(data, dict):
+                return Pile.from_dict(data)
+            elif isinstance(data, list):
+                return Pile.from_dict({"collections": data})
+            else:
+                raise ValueError(f"Invalid JSON data structure in {fp}")
 
     return Pile(
         collections,

{lionagi-0.12.4 → lionagi-0.12.5}/lionagi/protocols/graph/node.py

@@ -6,26 +6,19 @@ import json
 from typing import Any, ClassVar
 
 from pydantic import field_validator
+from pydapter import AdapterRegistry
+from pydapter.adapters import JsonAdapter, TomlAdapter
+from pydapter.extras.pandas_ import SeriesAdapter
 
 from lionagi._class_registry import LION_CLASS_REGISTRY
-from lionagi.adapters.types import (
-    AdapterRegistry,
-    JsonAdapter,
-    JsonFileAdapter,
-    PandasSeriesAdapter,
-    TomlAdapter,
-    TomlFileAdapter,
-)
 
 from .._concepts import Relational
 from ..generic.element import Element
 
 NODE_DEFAULT_ADAPTERS = (
     JsonAdapter,
-    JsonFileAdapter,
-    PandasSeriesAdapter,
+    SeriesAdapter,
     TomlAdapter,
-    TomlFileAdapter,
 )
 
 
@@ -33,8 +26,9 @@ class NodeAdapterRegistry(AdapterRegistry):
     pass
 
 
+node_adapter_registry = NodeAdapterRegistry()
 for i in NODE_DEFAULT_ADAPTERS:
-    NodeAdapterRegistry.register(i)
+    node_adapter_registry.register(i)
 
 __all__ = ("Node",)
 
@@ -48,7 +42,7 @@ class Node(Element, Relational):
       - Automatic subclass registration
     """
 
-    _adapter_registry: ClassVar[AdapterRegistry] = NodeAdapterRegistry
+    _adapter_registry: ClassVar[AdapterRegistry] = node_adapter_registry
 
     content: Any = None
     embedding: list[float] | None = None
@@ -88,8 +82,24 @@ class Node(Element, Relational):
         """
         Convert this Node to another format using a registered adapter.
         """
+        # For JSON/TOML adapters, we need to pass the dict representation
+        if obj_key in ["json", "toml"]:
+            data = self.to_dict()
+
+            # Create a simple object that has model_dump method
+            class _Wrapper:
+                def __init__(self, data):
+                    self._data = data
+
+                def model_dump(self):
+                    return self._data
+
+            wrapper = _Wrapper(data)
+            return self._get_adapter_registry().adapt_to(
+                wrapper, obj_key=obj_key, many=many, **kwargs
+            )
         return self._get_adapter_registry().adapt_to(
-            self, obj_key, many=many, **kwargs
+            self, obj_key=obj_key, many=many, **kwargs
         )
 
     @classmethod
@@ -107,7 +117,7 @@ class Node(Element, Relational):
         auto-delegate to the correct subclass via from_dict.
         """
         result = cls._get_adapter_registry().adapt_from(
-            cls, obj, obj_key, many=many, **kwargs
+            cls, obj, obj_key=obj_key, many=many, **kwargs
         )
         # If adapter returned multiple items, choose the first or handle as needed.
         if isinstance(result, list):
@@ -124,9 +134,5 @@ class Node(Element, Relational):
     def register_adapter(cls, adapter: Any) -> None:
         cls._get_adapter_registry().register(adapter)
 
-    @classmethod
-    def list_adapters(cls) -> list[str]:
-        return cls._get_adapter_registry().list_adapters()
-
 
 # File: lionagi/protocols/graph/node.py

lionagi-0.12.5/lionagi/version.py

@@ -0,0 +1 @@
+__version__ = "0.12.5"

{lionagi-0.12.4 → lionagi-0.12.5}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "lionagi"
-version = "0.12.4"
+version = "0.12.5"
 description = "An Intelligence Operating System."
 authors = [
     { name = "HaiyangLi", email = "quantocean.li@gmail.com" },
@@ -13,10 +13,9 @@ dependencies = [
     "aiohttp>=3.12.0",
     "backoff>=2.2.1",
     "jinja2>=3.1.0",
-    "pandas>=2.0.0",
     "pillow>=11.0.0",
-    "pydantic>2.0.0",
     "pydantic-settings>=2.8.0",
+    "pydapter[pandas]>=0.3.0",
     "python-dotenv>=1.1.0",
     "tiktoken>=0.8.0",
     "toml>=0.9.0",

{lionagi-0.12.4 → lionagi-0.12.5}/uv.lock

@@ -1166,17 +1166,16 @@ wheels = [
 
 [[package]]
 name = "lionagi"
-version = "0.12.4"
+version = "0.12.5"
 source = { editable = "." }
 dependencies = [
     { name = "aiocache" },
     { name = "aiohttp" },
     { name = "backoff" },
     { name = "jinja2" },
-    { name = "pandas" },
     { name = "pillow" },
-    { name = "pydantic" },
     { name = "pydantic-settings" },
+    { name = "pydapter", extra = ["pandas"] },
     { name = "python-dotenv" },
     { name = "tiktoken" },
     { name = "toml" },
@@ -1235,11 +1234,10 @@ requires-dist = [
     { name = "lionagi", extras = ["reader"], marker = "extra == 'all'" },
     { name = "lionagi", extras = ["reader"], marker = "extra == 'tools'" },
     { name = "ollama", marker = "extra == 'ollama'", specifier = ">=0.5.0" },
-    { name = "pandas", specifier = ">=2.0.0" },
     { name = "pillow", specifier = ">=11.0.0" },
     { name = "pre-commit", marker = "extra == 'lint'", specifier = ">=4.0.1" },
-    { name = "pydantic", specifier = ">2.0.0" },
     { name = "pydantic-settings", specifier = ">=2.8.0" },
+    { name = "pydapter", extras = ["pandas"], specifier = ">=0.3.0" },
     { name = "pytest", marker = "extra == 'test'", specifier = ">=8.3.4" },
     { name = "pytest-asyncio", marker = "extra == 'test'", specifier = ">=1.0.0" },
     { name = "python-dotenv", specifier = ">=1.1.0" },
@@ -1893,6 +1891,72 @@ wheels = [
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 ]
 
+[[package]]
+name = "orjson"
+version = "3.10.18"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/81/0b/fea456a3ffe74e70ba30e01ec183a9b26bec4d497f61dcfce1b601059c60/orjson-3.10.18.tar.gz", hash = "sha256:e8da3947d92123eda795b68228cafe2724815621fe35e8e320a9e9593a4bcd53", size = 5422810, upload-time = "2025-04-29T23:30:08.423Z" }
+wheels = [
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lionagi-0.12.4/lionagi/adapters/__init__.py

@@ -1 +0,0 @@
-"""deprecated, will be removed in v0.13.0"""

lionagi-0.12.4/lionagi/adapters/adapter.py

@@ -1,120 +0,0 @@
-# Copyright (c) 2023 - 2025, HaiyangLi <quantocean.li at gmail dot com>
-#
-# SPDX-License-Identifier: Apache-2.0
-
-"""
-Defines the `Adapter` protocol (a formal interface), along with the
-`AdapterRegistry` that maps string/file extensions or object keys to
-specific adapter implementations.
-"""
-
-import logging
-from typing import Any, Protocol, TypeVar, runtime_checkable
-
-from typing_extensions import get_protocol_members
-
-T = TypeVar("T")
-
-__all__ = (
-    "Adapter",
-    "ADAPTER_MEMBERS",
-    "AdapterRegistry",
-)
-
-
-@runtime_checkable
-class Adapter(Protocol):
-    """
-    Describes a two-way converter that knows how to transform an object
-    from an external representation to an internal format, and vice versa.
-
-    Attributes
-    ----------
-    obj_key : str
-        A unique key or extension that identifies what format this
-        adapter supports (e.g. ".csv", "json", "pd_dataframe").
-
-    Methods
-    -------
-    from_obj(subj_cls: type[T], obj: Any, /, many: bool, **kwargs) -> dict|list[dict]
-        Converts a raw external object (file contents, JSON string, etc.)
-        into a dictionary or list of dictionaries.
-    to_obj(subj: T, /, many: bool, **kwargs) -> Any
-        Converts an internal object (e.g., a Pydantic-based model)
-        into the target format (file, JSON, DataFrame, etc.).
-    """
-
-    obj_key: str
-
-    @classmethod
-    def from_obj(
-        cls,
-        subj_cls: type[T],
-        obj: Any,
-        /,
-        *,
-        many: bool,
-        **kwargs,
-    ) -> dict | list[dict]: ...
-
-    @classmethod
-    def to_obj(
-        cls,
-        subj: T,
-        /,
-        *,
-        many: bool,
-        **kwargs,
-    ) -> Any: ...
-
-
-ADAPTER_MEMBERS = get_protocol_members(Adapter)  # duck typing
-
-
-class AdapterRegistry:
-
-    _adapters: dict[str, Adapter] = {}
-
-    @classmethod
-    def list_adapters(cls) -> list[tuple[str | type, ...]]:
-        return list(cls._adapters.keys())
-
-    @classmethod
-    def register(cls, adapter: type[Adapter]) -> None:
-        for member in ADAPTER_MEMBERS:
-            if not hasattr(adapter, member):
-                _str = getattr(adapter, "obj_key", None) or repr(adapter)
-                _str = _str[:50] if len(_str) > 50 else _str
-                raise AttributeError(
-                    f"Adapter {_str} missing required methods."
-                )
-
-        if isinstance(adapter, type):
-            cls._adapters[adapter.obj_key] = adapter()
-        else:
-            cls._adapters[adapter.obj_key] = adapter
-
-    @classmethod
-    def get(cls, obj_key: type | str) -> Adapter:
-        try:
-            return cls._adapters[obj_key]
-        except Exception as e:
-            logging.error(f"Error getting adapter for {obj_key}. Error: {e}")
-
-    @classmethod
-    def adapt_from(
-        cls, subj_cls: type[T], obj: Any, obj_key: type | str, **kwargs
-    ) -> dict | list[dict]:
-        try:
-            return cls.get(obj_key).from_obj(subj_cls, obj, **kwargs)
-        except Exception as e:
-            logging.error(f"Error adapting data from {obj_key}. Error: {e}")
-            raise e
-
-    @classmethod
-    def adapt_to(cls, subj: T, obj_key: type | str, **kwargs) -> Any:
-        try:
-            return cls.get(obj_key).to_obj(subj, **kwargs)
-        except Exception as e:
-            logging.error(f"Error adapting data to {obj_key}. Error: {e}")
-            raise e