linkml 1.8.0__tar.gz → 1.8.0rc2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (150) hide show
  1. {linkml-1.8.0 → linkml-1.8.0rc2}/PKG-INFO +2 -2
  2. {linkml-1.8.0 → linkml-1.8.0rc2}/pyproject.toml +2 -2
  3. {linkml-1.8.0 → linkml-1.8.0rc2}/setup.py +2 -2
  4. {linkml-1.8.0 → linkml-1.8.0rc2}/LICENSE +0 -0
  5. {linkml-1.8.0 → linkml-1.8.0rc2}/README.md +0 -0
  6. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/__init__.py +0 -0
  7. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/_version.py +0 -0
  8. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/PythonGenNotes.md +0 -0
  9. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/README.md +0 -0
  10. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/__init__.py +0 -0
  11. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/common/__init__.py +0 -0
  12. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/common/type_designators.py +0 -0
  13. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/csvgen.py +0 -0
  14. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/class.md.jinja2 +0 -0
  15. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/class_diagram.md.jinja2 +0 -0
  16. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/common_metadata.md.jinja2 +0 -0
  17. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/enum.md.jinja2 +0 -0
  18. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/index.md.jinja2 +0 -0
  19. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/index.tex.jinja2 +0 -0
  20. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/schema.md.jinja2 +0 -0
  21. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/slot.md.jinja2 +0 -0
  22. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/subset.md.jinja2 +0 -0
  23. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen/type.md.jinja2 +0 -0
  24. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/docgen.py +0 -0
  25. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/dotgen.py +0 -0
  26. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/erdiagramgen.py +0 -0
  27. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/excelgen.py +0 -0
  28. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/golanggen.py +0 -0
  29. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/golrgen.py +0 -0
  30. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/graphqlgen.py +0 -0
  31. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/javagen/example_template.java.jinja2 +0 -0
  32. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/javagen/java_record_template.jinja2 +0 -0
  33. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/javagen.py +0 -0
  34. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/jsonldcontextgen.py +0 -0
  35. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/jsonldgen.py +0 -0
  36. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/jsonschemagen.py +0 -0
  37. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/legacy/__init__.py +0 -0
  38. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/linkmlgen.py +0 -0
  39. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/markdowngen.py +0 -0
  40. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/namespacegen.py +0 -0
  41. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/oocodegen.py +0 -0
  42. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/owlgen.py +0 -0
  43. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/plantumlgen.py +0 -0
  44. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/prefixmapgen.py +0 -0
  45. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/projectgen.py +0 -0
  46. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/protogen.py +0 -0
  47. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/__init__.py +0 -0
  48. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/array.py +0 -0
  49. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/black.py +0 -0
  50. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/build.py +0 -0
  51. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/includes.py +0 -0
  52. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/pydanticgen.py +0 -0
  53. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/template.py +0 -0
  54. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/attribute.py.jinja +0 -0
  55. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/base_model.py.jinja +0 -0
  56. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/class.py.jinja +0 -0
  57. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/conditional_import.py.jinja +0 -0
  58. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/enum.py.jinja +0 -0
  59. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/footer.py.jinja +0 -0
  60. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/imports.py.jinja +0 -0
  61. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/module.py.jinja +0 -0
  62. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pydanticgen/templates/validator.py.jinja +0 -0
  63. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/pythongen.py +0 -0
  64. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/rdfgen.py +0 -0
  65. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/shacl/__init__.py +0 -0
  66. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/shacl/ifabsent_processor.py +0 -0
  67. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/shacl/shacl_data_type.py +0 -0
  68. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/shaclgen.py +0 -0
  69. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/shexgen.py +0 -0
  70. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sparqlgen.py +0 -0
  71. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sqlalchemy/__init__.py +0 -0
  72. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sqlalchemy/sqlalchemy_declarative_template.py +0 -0
  73. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sqlalchemy/sqlalchemy_imperative_template.py +0 -0
  74. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sqlalchemygen.py +0 -0
  75. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sqltablegen.py +0 -0
  76. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/sssomgen.py +0 -0
  77. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/string_template.md +0 -0
  78. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/summarygen.py +0 -0
  79. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/terminusdbgen.py +0 -0
  80. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/typescriptgen.py +0 -0
  81. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/yamlgen.py +0 -0
  82. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/generators/yumlgen.py +0 -0
  83. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/__init__.py +0 -0
  84. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/cli.py +0 -0
  85. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/config/datamodel/.linkmllint.yaml +0 -0
  86. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/config/datamodel/__init__.py +0 -0
  87. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/config/datamodel/config.py +0 -0
  88. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/config/datamodel/config.yaml +0 -0
  89. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/config/default.yaml +0 -0
  90. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/config/recommended.yaml +0 -0
  91. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/formatters/__init__.py +0 -0
  92. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/formatters/formatter.py +0 -0
  93. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/formatters/json_formatter.py +0 -0
  94. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/formatters/markdown_formatter.py +0 -0
  95. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/formatters/terminal_formatter.py +0 -0
  96. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/formatters/tsv_formatter.py +0 -0
  97. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/linter.py +0 -0
  98. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/linter/rules.py +0 -0
  99. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/reporting/__init__.py +0 -0
  100. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/reporting/model.py +0 -0
  101. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/transformers/__init__.py +0 -0
  102. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/transformers/logical_model_transformer.py +0 -0
  103. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/transformers/model_transformer.py +0 -0
  104. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/transformers/relmodel_transformer.py +0 -0
  105. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/transformers/schema_renamer.py +0 -0
  106. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/__init__.py +0 -0
  107. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/cli_utils.py +0 -0
  108. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/converter.py +0 -0
  109. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/datautils.py +0 -0
  110. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/datavalidator.py +0 -0
  111. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/deprecation.py +0 -0
  112. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/execute_tutorial.py +0 -0
  113. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/generator.py +0 -0
  114. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/helpers.py +0 -0
  115. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/ifabsent_functions.py +0 -0
  116. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/logictools.py +0 -0
  117. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/mergeutils.py +0 -0
  118. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/rawloader.py +0 -0
  119. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/schema_builder.py +0 -0
  120. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/schema_fixer.py +0 -0
  121. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/schemaloader.py +0 -0
  122. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/schemasynopsis.py +0 -0
  123. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/sqlutils.py +0 -0
  124. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/typereferences.py +0 -0
  125. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/utils/validation.py +0 -0
  126. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/__init__.py +0 -0
  127. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/cli.py +0 -0
  128. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/loaders/__init__.py +0 -0
  129. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/loaders/delimited_file_loader.py +0 -0
  130. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/loaders/json_loader.py +0 -0
  131. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/loaders/loader.py +0 -0
  132. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/loaders/passthrough_loader.py +0 -0
  133. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/loaders/yaml_loader.py +0 -0
  134. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/plugins/__init__.py +0 -0
  135. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/plugins/jsonschema_validation_plugin.py +0 -0
  136. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/plugins/pydantic_validation_plugin.py +0 -0
  137. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/plugins/recommended_slots_plugin.py +0 -0
  138. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/plugins/shacl_validation_plugin.py +0 -0
  139. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/plugins/validation_plugin.py +0 -0
  140. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/report.py +0 -0
  141. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/validation_context.py +0 -0
  142. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validator/validator.py +0 -0
  143. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validators/__init__.py +0 -0
  144. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validators/jsonschemavalidator.py +0 -0
  145. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/validators/sparqlvalidator.py +0 -0
  146. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/workspaces/__init__.py +0 -0
  147. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/workspaces/datamodel/__init__.py +0 -0
  148. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/workspaces/datamodel/workspaces.py +0 -0
  149. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/workspaces/datamodel/workspaces.yaml +0 -0
  150. {linkml-1.8.0 → linkml-1.8.0rc2}/linkml/workspaces/example_runner.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: linkml
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- Version: 1.8.0
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+ Version: 1.8.0rc2
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  Summary: Linked Open Data Modeling Language
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  Home-page: https://linkml.io/linkml/
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  Keywords: schema,linked data,data modeling,rdf,owl,biolink
@@ -36,7 +36,7 @@ Requires-Dist: jinja2 (>=3.1.0)
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  Requires-Dist: jsonasobj2 (>=1.0.3,<2.0.0)
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  Requires-Dist: jsonschema[format] (>=4.0.0)
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  Requires-Dist: linkml-dataops
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- Requires-Dist: linkml-runtime (==1.8.0)
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+ Requires-Dist: linkml-runtime (==1.8.0rc2)
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  Requires-Dist: openpyxl
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  Requires-Dist: parse
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  Requires-Dist: prefixcommons (>=0.1.7)
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "linkml"
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- version = "1.8.0"
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+ version = "1.8.0rc2"
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  description = "Linked Open Data Modeling Language"
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  authors = [
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  "Chris Mungall <cjmungall@lbl.gov>",
@@ -107,7 +107,7 @@ jinja2 = ">= 3.1.0"
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  jsonasobj2 = "==1.*,>=1.0.0,>=1.0.3"
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  jsonschema = {extras = ["format"], version = ">=4.0.0"}
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  linkml-dataops = "*"
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- linkml-runtime = "1.8.0"
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+ linkml-runtime = "1.8.0rc2"
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  openpyxl = "*"
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  parse = "*"
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  prefixcommons = ">=0.1.7"
@@ -38,7 +38,7 @@ install_requires = \
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  'jsonasobj2>=1.0.3,<2.0.0',
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  'jsonschema[format]>=4.0.0',
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  'linkml-dataops',
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- 'linkml-runtime==1.8.0',
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+ 'linkml-runtime==1.8.0rc2',
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  'openpyxl',
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  'parse',
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  'prefixcommons>=0.1.7',
@@ -114,7 +114,7 @@ entry_points = \
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  setup_kwargs = {
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  'name': 'linkml',
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- 'version': '1.8.0',
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+ 'version': '1.8.0rc2',
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  'description': 'Linked Open Data Modeling Language',
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  'long_description': '[![Pyversions](https://img.shields.io/pypi/pyversions/linkml.svg)](https://pypi.python.org/pypi/linkml)\n![](https://github.com/linkml/linkml/workflows/Build/badge.svg)\n[![PyPi](https://img.shields.io/pypi/v/linkml.svg)](https://pypi.python.org/pypi/linkml)\n[![badge](https://img.shields.io/badge/launch-binder-579ACA.svg)](https://mybinder.org/v2/gh/linkml/linkml/main?filepath=notebooks)\n[![DOI](https://zenodo.org/badge/13996/linkml/linkml.svg)](https://zenodo.org/badge/latestdoi/13996/linkml/linkml)\n[![PyPIDownloadsTotal](https://pepy.tech/badge/linkml)](https://pepy.tech/project/linkml)\n[![PyPIDownloadsMonth](https://img.shields.io/pypi/dm/linkml?logo=PyPI&color=blue)](https://pypi.org/project/linkml)\n[![codecov](https://codecov.io/gh/linkml/linkml/branch/main/graph/badge.svg?token=WNQNG986UN)](https://codecov.io/gh/linkml/linkml)\n\n\n# LinkML - Linked Data Modeling Language\n\nLinkML is a linked data modeling language following object-oriented and ontological principles. LinkML models are typically authored in YAML, and can be converted to other schema representation formats such as JSON or RDF.\n\nThis repo holds the tools for generating and working with LinkML. For the LinkML schema (metamodel), please see https://github.com/linkml/linkml-model\n\nThe complete documentation for LinkML can be found here:\n\n - [linkml.io/linkml](https://linkml.io/linkml)\n',
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  'author': 'Chris Mungall',
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