linkcell 0.3.2__tar.gz

linkcell-0.3.2/.github/workflows/ci.yml

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+name: ci
+
+on:
+  push:
+    branches: [main]
+    tags: ['v*']
+  pull_request:
+
+# windows-latest omitted: meson/cmake wrap cargo via custom_target that
+# copies cargo-target/release/<lib> with POSIX path joins, and the
+# cdylib + cbindgen install layout is unix-shaped.
+
+jobs:
+  fmt:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+        with:
+          components: rustfmt
+      - run: cargo fmt --check
+
+  header-check:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      # Pin matches the version comment cbindgen writes into include/linkcell.h.
+      - run: cargo install cbindgen --version 0.29.4
+      - run: scripts/regen-capi-headers.sh --check
+
+  python:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+      - uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+          key: ${{ runner.os }}-py-${{ hashFiles('Cargo.lock', 'python/Cargo.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-py-
+      - name: Install Python test deps
+        run: |
+          python -m venv .venv
+          . .venv/bin/activate
+          python -m pip install --upgrade pip
+          pip install maturin pytest numpy
+          pip install torch --index-url https://download.pytorch.org/whl/cpu
+      - name: maturin develop
+        run: |
+          . .venv/bin/activate
+          maturin develop
+      - name: pytest
+        run: |
+          . .venv/bin/activate
+          pytest tests/python -q
+
+  cargo:
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        crate:
+          - name: default
+            flags: ""
+          - name: serial
+            flags: --no-default-features --features capi
+    name: cargo (${{ matrix.os }}, ${{ matrix.crate.name }})
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+        with:
+          components: clippy
+      - uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+          key: ${{ runner.os }}-cargo-${{ hashFiles('Cargo.lock') }}
+          restore-keys: |
+            ${{ runner.os }}-cargo-
+      - run: cargo test --locked ${{ matrix.crate.flags }}
+      - run: cargo clippy --locked --all-targets ${{ matrix.crate.flags }} -- -D warnings
+
+  meson:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+          key: ${{ runner.os }}-cargo-${{ hashFiles('Cargo.lock') }}
+          restore-keys: |
+            ${{ runner.os }}-cargo-
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+      - run: pip install meson ninja
+      - run: meson setup build
+      - run: meson compile -C build
+      - run: meson test -C build --print-errorlogs
+      - run: meson install -C build --destdir "$PWD/destdir"
+      - name: pkg-config after meson install
+        run: |
+          prefix="$PWD/destdir/usr/local"
+          export PKG_CONFIG_PATH="$prefix/lib/x86_64-linux-gnu/pkgconfig:$prefix/lib/pkgconfig"
+          pkg-config --exists --print-errors linkcell
+          pkg-config --modversion linkcell
+          pkg-config --cflags --libs linkcell
+          test -f "$prefix/include/linkcell.h"
+          test -f "$prefix/include/linkcell.hpp"
+          test -f "$prefix/include/linkcell_gpu.h"
+          test -f "$prefix/include/linkcell_gpu.hpp"
+          test -f "$prefix/lib/x86_64-linux-gnu/liblinkcell.a" \
+            -o -f "$prefix/lib/liblinkcell.a"
+          test -f "$prefix/lib/x86_64-linux-gnu/liblinkcell.so" \
+            -o -f "$prefix/lib/liblinkcell.so" \
+            -o -f "$prefix/lib/liblinkcell.dylib"
+
+  cmake:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: actions/cache@v4
+        with:
+          path: |
+            ~/.cargo/registry
+            ~/.cargo/git
+          key: ${{ runner.os }}-cargo-${{ hashFiles('Cargo.lock') }}
+          restore-keys: |
+            ${{ runner.os }}-cargo-
+      - run: cmake -S . -B build -DCMAKE_INSTALL_PREFIX="$PWD/prefix"
+      - run: cmake --build build
+      - run: ctest --test-dir build --output-on-failure
+      - run: cmake --install build
+      - name: find_package and pkg-config after cmake install
+        run: |
+          test -f prefix/include/linkcell.h
+          test -f prefix/lib/liblinkcell.a
+          test -f prefix/lib/liblinkcell.so -o -f prefix/lib/liblinkcell.dylib
+          test -f prefix/lib/pkgconfig/linkcell.pc
+          test -f prefix/lib/cmake/linkcell/linkcellConfig.cmake
+          export PKG_CONFIG_PATH="$PWD/prefix/lib/pkgconfig"
+          pkg-config --exists --print-errors linkcell
+          pkg-config --modversion linkcell
+          cmake -S tests/cmake-consumer -B find-build \
+            -DCMAKE_PREFIX_PATH="$PWD/prefix" \
+            -DLINKCELL_EXAMPLE="$PWD/examples/two_points.cpp"
+          cmake --build find-build
+          export LD_LIBRARY_PATH="$PWD/prefix/lib${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}"
+          export DYLD_LIBRARY_PATH="$PWD/prefix/lib${DYLD_LIBRARY_PATH:+:$DYLD_LIBRARY_PATH}"
+          ./find-build/find_lc

linkcell-0.3.2/.github/workflows/wheels.yml

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+name: wheels
+
+on:
+  push:
+    tags: ["v*"]
+  pull_request:
+    paths:
+      - "python/**"
+      - "linkcell/**"
+      - "pyproject.toml"
+      - "Cargo.toml"
+      - "Cargo.lock"
+      - "src/**"
+      - "third_party/**"
+      - "include/**"
+      - ".github/workflows/wheels.yml"
+
+concurrency:
+  group: wheels-${{ github.ref }}
+  cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}
+
+jobs:
+  # One abi3 wheel per platform (CPython 3.12+ GIL).
+  abi3:
+    name: abi3 ${{ matrix.name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - name: linux-x86_64
+            os: ubuntu-latest
+            arch: x86_64
+          - name: linux-aarch64
+            os: ubuntu-24.04-arm
+            arch: aarch64
+          - name: macos-arm64
+            os: macos-latest
+            arch: arm64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: astral-sh/setup-uv@v5
+        with:
+          python-version: "3.12"
+      - name: Build abi3 wheel
+        run: uvx --from 'cibuildwheel>=3.2,<4' cibuildwheel --output-dir wheelhouse
+        env:
+          CIBW_BUILD: "cp312-*"
+          CIBW_SKIP: "*musllinux* *i686* cp3??t-*"
+          CIBW_ARCHS: ${{ matrix.arch }}
+          CIBW_ENVIRONMENT: MATURIN_PEP517_ARGS="--features abi3"
+          CIBW_TEST_REQUIRES: pytest numpy
+          CIBW_TEST_COMMAND: pytest {project}/tests/python -q
+      - uses: actions/upload-artifact@v4
+        with:
+          name: wheels-abi3-${{ matrix.name }}
+          path: ./wheelhouse/*.whl
+
+  # Free-threaded set: one wheel per CPython t ABI (no limited API).
+  freethreaded:
+    name: freethreaded ${{ matrix.name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - name: linux-x86_64
+            os: ubuntu-latest
+            arch: x86_64
+          - name: linux-aarch64
+            os: ubuntu-24.04-arm
+            arch: aarch64
+          - name: macos-arm64
+            os: macos-latest
+            arch: arm64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: astral-sh/setup-uv@v5
+        with:
+          python-version: "3.13"
+      - name: Build free-threaded wheels
+        run: uvx --from 'cibuildwheel>=3.2,<4' cibuildwheel --output-dir wheelhouse
+        env:
+          CIBW_BUILD: "cp314t-*"
+          CIBW_SKIP: "*musllinux* *i686*"
+          CIBW_ARCHS: ${{ matrix.arch }}
+          CIBW_TEST_REQUIRES: pytest numpy
+          CIBW_TEST_COMMAND: pytest {project}/tests/python -q
+      - uses: actions/upload-artifact@v4
+        with:
+          name: wheels-freethreaded-${{ matrix.name }}
+          path: ./wheelhouse/*.whl
+
+  sdist:
+    name: Source distribution
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: dtolnay/rust-toolchain@stable
+      - uses: astral-sh/setup-uv@v5
+        with:
+          python-version: "3.12"
+      - name: Build sdist
+        run: uvx maturin sdist --out dist
+      - uses: actions/upload-artifact@v4
+        with:
+          name: sdist
+          path: dist/*.tar.gz
+
+  # Trusted publisher: PyPI project linkcell, repo d-SEAMS/linkcell,
+  # workflow wheels.yml, environment (Any). Do not set `environment:`
+  # on this job.
+  publish:
+    name: Publish to PyPI
+    needs: [abi3, freethreaded, sdist]
+    runs-on: ubuntu-latest
+    if: >-
+      github.repository == 'd-SEAMS/linkcell' &&
+      github.event_name == 'push' &&
+      startsWith(github.ref, 'refs/tags/v')
+    permissions:
+      id-token: write
+      contents: read
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          path: dist
+          merge-multiple: true
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@ed0c53931b1dc9bd32cbe73a98c7f6766f8a527e
+        with:
+          packages-dir: dist/

linkcell-0.3.2/.gitignore

@@ -0,0 +1,335 @@
+### Generated by gibo (https://github.com/simonwhitaker/gibo)
+### https://raw.github.com/github/gitignore/dcc0fc7bc2b5ba480cf117ad1be31bafceeaff46/Rust.gitignore
+
+# Generated by Cargo
+# will have compiled files and executables
+debug
+target
+
+# These are backup files generated by rustfmt
+**/*.rs.bk
+
+# MSVC Windows builds of rustc generate these, which store debugging information
+*.pdb
+
+# Generated by cargo mutants
+# Contains mutation testing data
+**/mutants.out*/
+
+# rustc will dump stack traces when hitting an internal compiler error to PWD
+rustc-ice-*.txt
+
+# RustRover
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+### Generated by gibo (https://github.com/simonwhitaker/gibo)
+### https://raw.github.com/github/gitignore/dcc0fc7bc2b5ba480cf117ad1be31bafceeaff46/C++.gitignore
+
+# Prerequisites
+*.d
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.obj
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Linker files
+*.ilk
+
+# Debugger Files
+*.pdb
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+*.dll
+*.so.*
+
+# Fortran module files
+*.mod
+*.smod
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+*.lib
+
+# Executables
+*.exe
+*.out
+*.app
+
+# Build directories
+build/
+Build/
+build-*/
+
+# CMake generated files
+CMakeFiles/
+CMakeCache.txt
+cmake_install.cmake
+Makefile
+install_manifest.txt
+compile_commands.json
+
+# Temporary files
+*.tmp
+*.log
+*.bak
+*.swp
+
+# vcpkg
+vcpkg_installed/
+
+# debug information files
+*.dwo
+
+# test output & cache
+Testing/
+.cache/
+
+/subprojects/*
+!/subprojects/*.wrap
+!/subprojects/packagefiles/
+
+/target/
+/build/
+/build-meson/
+/build-cmake/
+/destdir-meson/
+/prefix-cmake/
+/.pixi/
+*.a
+*.so
+### Generated by gibo (https://github.com/simonwhitaker/gibo)
+### https://raw.github.com/github/gitignore/dcc0fc7bc2b5ba480cf117ad1be31bafceeaff46/Python.gitignore
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[codz]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#   Usually these files are written by a python script from a template
+#   before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py.cover
+*.lcov
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+# Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+# uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+# poetry.lock
+# poetry.toml
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#   pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
+#   https://pdm-project.org/en/latest/usage/project/#working-with-version-control
+# pdm.lock
+# pdm.toml
+.pdm-python
+.pdm-build/
+
+# pixi
+#   Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
+# pixi.lock
+#   Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
+#   in the .venv directory. It is recommended not to include this directory in version control.
+.pixi/*
+!.pixi/config.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule*
+celerybeat.pid
+
+# Redis
+*.rdb
+*.aof
+*.pid
+
+# RabbitMQ
+mnesia/
+rabbitmq/
+rabbitmq-data/
+
+# ActiveMQ
+activemq-data/
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.envrc
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#   JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#   be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#   and can be added to the global gitignore or merged into this file.  For a more nuclear
+#   option (not recommended) you can uncomment the following to ignore the entire idea folder.
+# .idea/
+
+# Abstra
+#   Abstra is an AI-powered process automation framework.
+#   Ignore directories containing user credentials, local state, and settings.
+#   Learn more at https://abstra.io/docs
+.abstra/
+
+# Visual Studio Code
+#   Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore 
+#   that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
+#   and can be added to the global gitignore or merged into this file. However, if you prefer, 
+#   you could uncomment the following to ignore the entire vscode folder
+# .vscode/
+# Temporary file for partial code execution
+tempCodeRunnerFile.py
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# Marimo
+marimo/_static/
+marimo/_lsp/
+__marimo__/
+
+# Streamlit
+.streamlit/secrets.toml