liminal-orm 4.3.0__tar.gz → 4.3.2__tar.gz

{liminal_orm-4.3.0 → liminal_orm-4.3.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: liminal-orm
-Version: 4.3.0
+Version: 4.3.2
 Summary: An ORM and toolkit that builds on top of Benchling's platform to keep your schemas and downstream code dependencies in sync.
 Project-URL: Homepage, https://github.com/dynotx/liminal-orm
 Project-URL: Repository, https://github.com/dynotx/liminal-orm

liminal_orm-4.3.2/liminal/.gitignore

@@ -0,0 +1 @@
+*

liminal_orm-4.3.2/liminal/CACHEDIR.TAG

@@ -0,0 +1 @@
+Signature: 8a477f597d28d172789f06886806bc55

{liminal_orm-4.3.0 → liminal_orm-4.3.2}/liminal/cli/utils.py

@@ -1,6 +1,7 @@
 import importlib.util
 from logging import Logger
 from pathlib import Path
+import sys
 
 from liminal.connection.benchling_connection import BenchlingConnection
 
@@ -47,7 +48,18 @@ def _read_local_env_file(
     if spec is None or spec.loader is None:
         raise Exception(f"Could not find {env_file_path}.")
     module = importlib.util.module_from_spec(spec)
-    spec.loader.exec_module(module)
+
+    parent_dir = str(module_path.parent.parent)
+    sys_path_modified = False
+    if parent_dir not in sys.path:
+        sys.path.insert(0, parent_dir)
+        sys_path_modified = True
+    try:
+        spec.loader.exec_module(module)
+    finally:
+        if sys_path_modified:
+            sys.path.remove(parent_dir)
+
     for attr_name in dir(module):
         bc = getattr(module, attr_name)
         if isinstance(bc, BenchlingConnection):

{liminal_orm-4.3.0 → liminal_orm-4.3.2}/liminal/entity_schemas/operations.py

@@ -445,11 +445,11 @@ class ArchiveEntitySchemaField(BaseOperation):
 
     def _validate(self, benchling_service: BenchlingService) -> TagSchemaModel:
         tag_schema = TagSchemaModel.get_one(benchling_service, self.wh_schema_name)
+        name_template_field_ids = [
+            p.fieldId for p in tag_schema.nameTemplateParts if p is not None
+        ]
         field = tag_schema.get_field(self.wh_field_name)
-        if (
-            tag_schema.nameTemplateFields
-            and field.name in tag_schema.nameTemplateFields
-        ):
+        if field.id in name_template_field_ids:
             raise ValueError(
                 f"Cannot archive field {self.wh_field_name} on entity schema {self.wh_schema_name}. Field is used in name template."
             )

{liminal_orm-4.3.0 → liminal_orm-4.3.2}/liminal/entity_schemas/tag_schema_models.py

@@ -378,7 +378,6 @@ class TagSchemaModel(BaseModel):
     labelingStrategies: list[str]
     mixtureSchemaConfig: MixtureSchemaConfig | None
     name: str | None
-    nameTemplateFields: list[str] | None
     nameTemplateParts: list[NameTemplatePartModel] | None
     permissions: dict[str, bool] | None
     prefix: str | None

liminal_orm-4.3.2/liminal/pyvenv.cfg

@@ -0,0 +1,5 @@
+home = /Users/nirmitdamania/.local/share/uv/python/cpython-3.10.8-macos-aarch64-none/bin
+implementation = CPython
+uv = 0.8.9
+version_info = 3.10.8
+include-system-site-packages = false

liminal_orm-4.3.2/liminal/share/jupyter/kernels/python3/kernel.json

@@ -0,0 +1,14 @@
+{
+ "argv": [
+  "python",
+  "-m",
+  "ipykernel_launcher",
+  "-f",
+  "{connection_file}"
+ ],
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "metadata": {
+  "debugger": true
+ }
+}

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liminal_orm-4.3.2/liminal/share/man/man1/ipython.1

@@ -0,0 +1,60 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH IPYTHON 1 "July 15, 2011"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7) and groff_man(7)
+.\" .SH        section heading
+.\" .SS        secondary section heading
+.\"
+.\"
+.\" To preview this page as plain text: nroff -man ipython.1
+.\"
+.SH NAME
+ipython \- Tools for Interactive Computing in Python.
+.SH SYNOPSIS
+.B ipython
+.RI [ options ] " files" ...
+
+.B ipython subcommand
+.RI [ options ] ...
+
+.SH DESCRIPTION
+An interactive Python shell with automatic history (input and output), dynamic
+object introspection, easier configuration, command completion, access to the
+system shell, integration with numerical and scientific computing tools,
+web notebook, Qt console, and more.
+
+For more information on how to use IPython, see 'ipython \-\-help',
+or 'ipython \-\-help\-all' for all available command\(hyline options.
+
+.SH "ENVIRONMENT VARIABLES"
+.sp
+.PP
+\fIIPYTHONDIR\fR
+.RS 4
+This is the location where IPython stores all its configuration files.  The default
+is $HOME/.ipython if IPYTHONDIR is not defined.
+
+You can see the computed value of IPYTHONDIR with `ipython locate`.
+
+.SH FILES
+
+IPython uses various configuration files stored in profiles within IPYTHONDIR.
+To generate the default configuration files and start configuring IPython,
+do 'ipython profile create', and edit '*_config.py' files located in
+IPYTHONDIR/profile_default.
+
+.SH AUTHORS
+IPython is written by the IPython Development Team <https://github.com/ipython/ipython>.

{liminal_orm-4.3.0 → liminal_orm-4.3.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "liminal-orm"
-version = "4.3.0"
+version = "4.3.2"
 description = "An ORM and toolkit that builds on top of Benchling's platform to keep your schemas and downstream code dependencies in sync."
 authors = [{ name = "DynoTx Open Source", email = "opensource@dynotx.com" }]
 requires-python = ">=3.9,<4"