lime-stable 2.4.0__tar.gz → 2.4.2__tar.gz

{lime_stable-2.4.0/src/lime_stable.egg-info → lime_stable-2.4.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: lime-stable
-Version: 2.4.0
+Version: 2.4.2
 Summary: Line measuring algorithm for astronomical spectra
 Author-email: Vital Fernández <vgf@stsci.edu>
 License: GPL-3.0-or-later
@@ -9,30 +9,31 @@ Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE.rst
-Requires-Dist: astropy~=7.1
-Requires-Dist: lmfit~=1.3
-Requires-Dist: matplotlib~=3.10
-Requires-Dist: numpy~=2.3
-Requires-Dist: pandas~=2.2
-Requires-Dist: scipy~=1.16
+Requires-Dist: astropy>=8.0
+Requires-Dist: lmfit>=1.3
+Requires-Dist: matplotlib>=3.10
+Requires-Dist: numpy<3,>=2.0
+Requires-Dist: pandas<4,>=3.0
+Requires-Dist: scipy>=1.18
 Provides-Extra: full
 Requires-Dist: asdf~=4.1; extra == "full"
 Requires-Dist: aspect-stable~=0.8; extra == "full"
-Requires-Dist: bokeh~=3.8; extra == "full"
+Requires-Dist: bokeh>=3.9; extra == "full"
 Requires-Dist: mplcursors~=0.6; extra == "full"
 Requires-Dist: openpyxl~=3.1; extra == "full"
 Requires-Dist: PyLaTeX~=1.4; extra == "full"
 Requires-Dist: toml~=0.10; extra == "full"
 Provides-Extra: docs
-Requires-Dist: sphinx-rtd-theme~=3.0; extra == "docs"
-Requires-Dist: sphinx_togglebutton~=0.3; extra == "docs"
-Requires-Dist: sphinx_book_theme~=1.1; extra == "docs"
-Requires-Dist: ipympl~=0.9; extra == "docs"
-Requires-Dist: myst-nb~=1.3; extra == "docs"
+Requires-Dist: sphinx~=9.1.0; extra == "docs"
+Requires-Dist: sphinx-rtd-theme~=3.1; extra == "docs"
+Requires-Dist: sphinx_togglebutton~=0.4.5; extra == "docs"
+Requires-Dist: sphinx_book_theme~=1.2; extra == "docs"
+Requires-Dist: ipympl~=0.10; extra == "docs"
+Requires-Dist: myst-nb~=1.4; extra == "docs"
 Provides-Extra: tests
-Requires-Dist: pytest~=8.4; extra == "tests"
-Requires-Dist: pytest-cov~=7.0; extra == "tests"
-Requires-Dist: pytest-mpl~=0.17; extra == "tests"
+Requires-Dist: pytest~=9.1.1; extra == "tests"
+Requires-Dist: pytest-cov~=7.1.0; extra == "tests"
+Requires-Dist: pytest-mpl~=0.19.0; extra == "tests"
 Dynamic: license-file
 
 [![Line Measurer (LiMe) library.](https://github.com/Vital-Fernandez/lime/blob/0afedb150b0169deec6c7f159def99750a3a30da/docs/source/_static/logo_transparent.png?raw=true)]()

{lime_stable-2.4.0 → lime_stable-2.4.2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "lime-stable"
-version = "2.4.0"
+version = "2.4.2"
 readme = { file = "README.md", content-type = "text/markdown" }
 requires-python = ">=3.12"
 license = {text = "GPL-3.0-or-later"}
@@ -14,31 +14,32 @@ classifiers = ["License :: OSI Approved :: GNU General Public License v3 (GPLv3)
 authors = [{name = "Vital Fernández", email = "vgf@stsci.edu"}]
 description = "Line measuring algorithm for astronomical spectra"
 
-dependencies = ["astropy~=7.1",
-                "lmfit~=1.3",
-                "matplotlib~=3.10",
-                "numpy~=2.3",
-                "pandas~=2.2",
-                "scipy~=1.16"]
+dependencies = ["astropy>=8.0",
+                "lmfit>=1.3",
+                "matplotlib>=3.10",
+                "numpy>=2.0,<3",
+                "pandas>=3.0,<4",
+                "scipy>=1.18"]
 
 [project.optional-dependencies]
 full = ["asdf~=4.1",
         "aspect-stable~=0.8",
-        "bokeh~=3.8",
+        "bokeh>=3.9",
         "mplcursors~=0.6",
         "openpyxl~=3.1",
         "PyLaTeX~=1.4",
         "toml~=0.10",]
 
-docs = ["sphinx-rtd-theme~=3.0",
-        "sphinx_togglebutton~=0.3",
-        "sphinx_book_theme~=1.1",
-        "ipympl~=0.9",
-        "myst-nb~=1.3"]
+docs = ["sphinx~=9.1.0",
+        "sphinx-rtd-theme~=3.1",
+        "sphinx_togglebutton~=0.4.5",
+        "sphinx_book_theme~=1.2",
+        "ipympl~=0.10",
+        "myst-nb~=1.4"]
 
-tests = ["pytest~=8.4",
-         "pytest-cov~=7.0",
-         "pytest-mpl~=0.17"]
+tests = ["pytest~=9.1.1",
+         "pytest-cov~=7.1.0",
+         "pytest-mpl~=0.19.0"]
 
 [tool.pytest.ini_options]
 pythonpath = ["src"]

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/archives/read_fits.py

@@ -610,11 +610,89 @@ class OpenFits:
         pixel_mask = np.isnan(flux_array) | np.isnan(err_array)
 
         # Spectrum properties
-        params_dict = SPECTRUM_FITS_PARAMS['nirspec']
-        params_dict['pixel_mask'] = pixel_mask
+        params_dict = {**SPECTRUM_FITS_PARAMS['nirspec'], 'pixel_mask': pixel_mask}
 
         return wave_array, flux_array, err_array, header_list, params_dict
 
+
+    @staticmethod
+    def lzlcs_miri_merged(fits_address, data_ext_list=(1), hdr_ext_list=(1), **kwargs):
+
+        """
+
+        This method returns the spectrum array data and headers from a MUSE observation.
+
+        The function returns numpy arrays with the wavelength, flux and uncertainty flux (if available this is the
+        standard deviation available), a list with the requested headers and a dictionary with the parameters to
+        construct a LiMe Cube. These parameters include the observation wavelength/flux units, normalization and wcs
+        from the input fits file.
+
+        :param fits_address: File location address for the observation .fits file.
+        :type fits_address: str, Path
+
+        :param data_ext_list: Data extension number or name to extract from the .fits file.
+        :type fits_address: int, str or list of either, optional
+
+        :param hdr_ext_list: header extension number or name to extract from the .fits file.
+        :type hdr_ext_list: int, str or list of either, optional
+
+        :return: wavelength array, flux array, uncertainty array, header list, observation parameter dict
+
+        """
+
+        # Get data table and header dict lists
+        data_list, header_list = load_fits(fits_address, data_ext_list, hdr_ext_list, url_check=False)
+
+        # Re-construct spectrum arrays
+        wave_array = data_list[0]['WAVE']
+        flux_array = data_list[0]['FLUX']
+        err_array = data_list[0]['FLUX_ERROR']
+
+        # Fits properties
+        fits_params = {**SPECTRUM_FITS_PARAMS['lzlcs_miri_merged'], 'pixel_mask': None}
+
+        return wave_array, flux_array, err_array, header_list, fits_params
+
+    @staticmethod
+    def lzlcs_miri_x1d(fits_address, data_ext_list=(1), hdr_ext_list=(1), **kwargs):
+
+        """
+
+        This method returns the spectrum array data and headers from a MUSE observation.
+
+        The function returns numpy arrays with the wavelength, flux and uncertainty flux (if available this is the
+        standard deviation available), a list with the requested headers and a dictionary with the parameters to
+        construct a LiMe Cube. These parameters include the observation wavelength/flux units, normalization and wcs
+        from the input fits file.
+
+        :param fits_address: File location address for the observation .fits file.
+        :type fits_address: str, Path
+
+        :param data_ext_list: Data extension number or name to extract from the .fits file.
+        :type fits_address: int, str or list of either, optional
+
+        :param hdr_ext_list: header extension number or name to extract from the .fits file.
+        :type hdr_ext_list: int, str or list of either, optional
+
+        :return: wavelength array, flux array, uncertainty array, header list, observation parameter dict
+
+        """
+
+        # Get data table and header dict lists
+        data_list, header_list = load_fits(fits_address, data_ext_list, hdr_ext_list, url_check=False)
+
+        # Re-construct spectrum arrays
+        wave_array = data_list[0]['WAVELENGTH']
+        flux_array = data_list[0]['FLUX']
+        err_array = data_list[0]['FLUX_ERROR']
+
+        # Fits properties
+        fits_params = {**SPECTRUM_FITS_PARAMS['lzlcs_miri_x1d'], 'pixel_mask': None}
+
+        return wave_array, flux_array, err_array, header_list, fits_params
+
+
+
     @staticmethod
     def nirspec_grizli(fits_address, data_ext_list=1, hdr_ext_list=(0, 1), **kwargs):
 
@@ -649,8 +727,7 @@ class OpenFits:
         pixel_mask = np.isnan(flux_array) | np.isnan(err_array)
 
         # Spectrum properties
-        params_dict = SPECTRUM_FITS_PARAMS['nirspec_grizli']
-        params_dict['pixel_mask'] = pixel_mask
+        params_dict = {**SPECTRUM_FITS_PARAMS['nirspec_grizli'], 'pixel_mask': pixel_mask}
 
         return wave_array, flux_array, err_array, header_list, params_dict
 
@@ -695,7 +772,7 @@ class OpenFits:
             flux_array, err_array = data_list[0], None
 
         # Spectrum properties
-        params_dict = SPECTRUM_FITS_PARAMS['isis']
+        params_dict = {**SPECTRUM_FITS_PARAMS['isis']}
 
         return wave_array, flux_array, err_array, header_list, params_dict
 
@@ -776,7 +853,7 @@ class OpenFits:
             flux_array, err_array = data_list[0], None
 
         # Spectrum properties
-        params_dict = SPECTRUM_FITS_PARAMS['osiris']
+        params_dict = {**SPECTRUM_FITS_PARAMS['osiris']}
 
         return wave_array, flux_array, err_array, header_list, params_dict
 
@@ -843,7 +920,7 @@ class OpenFits:
             #     # print(key_arr, np.any(np.isnan(cont_arr)))
 
         # Spectrum properties
-        params_dict = SPECTRUM_FITS_PARAMS['cos']
+        params_dict = {**SPECTRUM_FITS_PARAMS['cos']}
 
         return wave_arr, flux_arr, err_arr, header_list, params_dict
 
@@ -894,8 +971,7 @@ class OpenFits:
         err_array = np.sqrt(1 / ivar_array)
 
         # Spectrum properties
-        params_dict = SPECTRUM_FITS_PARAMS['sdss']
-        params_dict['redshift'] = redshift
+        params_dict = {**SPECTRUM_FITS_PARAMS['sdss'], 'redshift': redshift}
 
         return wave_array, flux_array, err_array, header_list, params_dict
 
@@ -1124,6 +1200,7 @@ class OpenFits:
 
         return wave_array, flux_cube, err_cube, header_list, fits_params
 
+
     @staticmethod
     def desi(target_id, root_url='https://data.desi.lbl.gov/public/edr/spectro/redux', **kwargs):
 

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/changelog.txt

@@ -122,7 +122,7 @@ LiMe minor update - 2.0.4 - 12/05/2025
     - Further development for the functions involving redshift a line fitting using aspect
     - The spatial masking functions should not require the 'PARAM', 'PARAMIDX', 'PARAMVAL' and 'NUMSPAXE' in the .fits headers to plot the mask overlays
 
-LiMe medium update - 2.4.0 - 26/06/2024
+LiMe medium update - 2.4.0 - 26/06/2026
     - Added new ultraviolet and infrared lines to the database `lines_database_v2.0.6.txt`
     - Major updates to `observations.py`: expanded spectrum observation handling
     - Major updates to `workflow.py`: significant refactoring of the fitting workflow
@@ -145,5 +145,13 @@ LiMe medium update - 2.4.0 - 26/06/2024
     - Adding releases on the github page to mark medium / major updates
     - Bump minimum python to 3.12 version for uniform requirements with readthedocs compilation
 
+LiMe small update - 2.4.1 - 08/07/2026
+    - Now all instrument fits loading functions copy the configuration dictionary to avoid possible corruptions.
+    - Added lines to lines database.
+    - The lines database version now follows the current lime version.
+    - Renamed internal function "continuum_calculation" to "_cont_level_profile" in order to avoid confusion with external "Spectrum.fit.continuum"
+    - Bump the dependencies to the current versions. At the current state, LiMe should be compatible with Pandas 3.0.0 but more changes will be necessary to take full advantage of the library upgrades"
 
+LiMe small update - 2.4.2 - 08/07/2026
+    - Relaxed dependencies for the numba installation in the streamlit specsy wrapper"
 

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/fitting/lines.py

@@ -1008,7 +1008,7 @@ class LineFitting:
 
         return
 
-    def continuum_calculation(self, idcs_emis, idcs_cont, user_cont_source, err_from_bands):
+    def _cont_level_profile(self, idcs_emis, idcs_cont, user_cont_source, err_from_bands):
 
         # Use the continuum bands for the calculation
         match user_cont_source:

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/lime.toml

@@ -1,6 +1,7 @@
 [metadata]
 name = 'lime-stable'
-version = "2.4.0"
+version = "2.4.2"
+lines_database = 'lines_database_v2.4.1.txt'
 
 # =====================
 # Spectrum / Long-slit
@@ -42,6 +43,20 @@ cos.units_flux = "FLAM"
 cos.pixel_mask = "nan"
 cos.id_label = 'null'
 
+lzlcs_miri_merged.norm_flux = 'null'
+lzlcs_miri_merged.res_power = 'null'
+lzlcs_miri_merged.units_wave = "um"
+lzlcs_miri_merged.units_flux = "Jy"
+lzlcs_miri_merged.pixel_mask = "nan"
+lzlcs_miri_merged.id_label = 'null'
+
+lzlcs_miri_x1d.norm_flux = 'null'
+lzlcs_miri_x1d.res_power = 'null'
+lzlcs_miri_x1d.units_wave = "um"
+lzlcs_miri_x1d.units_flux = "Jy"
+lzlcs_miri_x1d.pixel_mask = "nan"
+lzlcs_miri_x1d.id_label = 'null'
+
 sdss.norm_flux = 'null'
 sdss.res_power = 'null'
 sdss.units_wave = "Angstrom"

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/plotting/bokeh_plots.py

@@ -17,7 +17,7 @@ try:
     from bokeh.core.properties import value
 
     from bokeh import models
-    from bokeh.models import ColumnDataSource, Legend, LegendItem, LogScale, Range1d, Label
+    from bokeh.models import ColumnDataSource, Legend, LegendItem, LogScale, Range1d, Label, GridPlot
     from bokeh.models import BoxAnnotation
     from bokeh.models import WheelZoomTool, PanTool, HoverTool
 
@@ -43,8 +43,24 @@ def ensure_list(x):
     return x if isinstance(x, list) else [x]
 
 
+def extract_figures(figure_obj):
+    # Normalize input (figure, list of figures, GridPlot, or nested layout) to a flat list of figures
+    fig_list = []
+    for item_obj in ensure_list(figure_obj):
+        if item_obj is None:
+            continue
+        if isinstance(item_obj, GridPlot):
+            fig_list += list(item_obj.select(dict(type=figure)))
+        else:
+            fig_list.append(item_obj)
+    return fig_list
+
+
 def update_bokeh_figure(figure_obj, config_dict):
 
+    if isinstance(figure_obj, GridPlot):
+        figure_obj = extract_figures(figure_obj)
+
     # Set general figure properties
     for key, value in config_dict.items():
 

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/resources/generator_db.py

@@ -121,18 +121,21 @@ def format_lines_database(df_lines, redshift=0, band_velocity_sigma=100, n_sigma
 if __name__ == "__main__":
 
     current_file_folder = Path(__file__).resolve().parent
-    PARENT_DATABASE_path = current_file_folder / 'lines_database_v2.0.5.xlsx'
+    PARENT_DATABASE_path = current_file_folder / 'lines_database_v2.4.1.xlsx'
 
     # Reformat the database
     parent_db = pd.read_excel(PARENT_DATABASE_path, header=0, index_col=0)
     child_db = format_lines_database(parent_db)
 
     # Save the new version
-    CHILD_DATABASE_path = current_file_folder / 'lines_database_v2.0.6.txt'
+    CHILD_DATABASE_path = current_file_folder / 'lines_database_v2.4.1.txt'
     lime.save_frame(CHILD_DATABASE_path, child_db)
 
-    # CHILD_DATABASE_path = current_file_folder / 'lines_database_v2.0.5.xlsx'
-    # lime.save_frame(CHILD_DATABASE_path, child_db)
+    # # Preparing new version
+    # PARENT_DATABASE_path = current_file_folder / 'lines_database_v2.0.6.txt'
+    # parent_db = lime.load_frame(PARENT_DATABASE_path)
+    # CHILD_DATABASE_path = current_file_folder / 'lines_database_v2.4.1.xlsx'
+    # lime.save_frame(CHILD_DATABASE_path, parent_db)
 
 
 

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/transitions.py

@@ -7,7 +7,7 @@ from numpy.core.fromnumeric import argmin
 from collections import Counter
 
 from lime.io import (_LOG_COLUMNS, check_file_dataframe, LiMe_Error, _RANGE_ATTRIBUTES_FIT, _ATTRIBUTES_FIT, load_frame,
-                     _LIME_FOLDER)
+                     _LIME_FOLDER, lime_cfg)
 from lime.tools import pd_get, au, unit_conversion
 from lime import rsrc_manager
 from dataclasses import dataclass
@@ -48,7 +48,7 @@ VAL_LIST = [1000, 900, 500, 400, 100, 90, 50, 40, 10, 9, 5, 4, 1]
 SYB_LIST = ["M", "CM", "D", "CD", "C", "XC", "L", "XL", "X", "IX", "V", "IV", "I"]
 
 # Reading file with the format and export status for the measurements
-_DATABASE_FILE = rf'{_LIME_FOLDER}/resources/lines_database_v2.0.6.txt'
+_DATABASE_FILE = rf'{_LIME_FOLDER}/resources/{lime_cfg["metadata"]["lines_database"]}'
 
 def check_lines_frame_units(frame):
 

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime/workflow.py

@@ -1037,7 +1037,7 @@ class SpecTreatment(LineFitting, RedshiftFitting):
             idcs_line, idcs_continua = idcs_selection
 
             # Compute line continuum and the pixel error
-            cont_arr, pixel_err_arr = self.continuum_calculation(idcs_line, idcs_continua, cont_source, err_from_bands)
+            cont_arr, pixel_err_arr = self._cont_level_profile(idcs_line, idcs_continua, cont_source, err_from_bands)
 
             # Non-parametric measurements
             self.integrated_properties(self.line, self._spec.wave[idcs_line], self._spec.flux[idcs_line],

{lime_stable-2.4.0 → lime_stable-2.4.2/src/lime_stable.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: lime-stable
-Version: 2.4.0
+Version: 2.4.2
 Summary: Line measuring algorithm for astronomical spectra
 Author-email: Vital Fernández <vgf@stsci.edu>
 License: GPL-3.0-or-later
@@ -9,30 +9,31 @@ Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE.rst
-Requires-Dist: astropy~=7.1
-Requires-Dist: lmfit~=1.3
-Requires-Dist: matplotlib~=3.10
-Requires-Dist: numpy~=2.3
-Requires-Dist: pandas~=2.2
-Requires-Dist: scipy~=1.16
+Requires-Dist: astropy>=8.0
+Requires-Dist: lmfit>=1.3
+Requires-Dist: matplotlib>=3.10
+Requires-Dist: numpy<3,>=2.0
+Requires-Dist: pandas<4,>=3.0
+Requires-Dist: scipy>=1.18
 Provides-Extra: full
 Requires-Dist: asdf~=4.1; extra == "full"
 Requires-Dist: aspect-stable~=0.8; extra == "full"
-Requires-Dist: bokeh~=3.8; extra == "full"
+Requires-Dist: bokeh>=3.9; extra == "full"
 Requires-Dist: mplcursors~=0.6; extra == "full"
 Requires-Dist: openpyxl~=3.1; extra == "full"
 Requires-Dist: PyLaTeX~=1.4; extra == "full"
 Requires-Dist: toml~=0.10; extra == "full"
 Provides-Extra: docs
-Requires-Dist: sphinx-rtd-theme~=3.0; extra == "docs"
-Requires-Dist: sphinx_togglebutton~=0.3; extra == "docs"
-Requires-Dist: sphinx_book_theme~=1.1; extra == "docs"
-Requires-Dist: ipympl~=0.9; extra == "docs"
-Requires-Dist: myst-nb~=1.3; extra == "docs"
+Requires-Dist: sphinx~=9.1.0; extra == "docs"
+Requires-Dist: sphinx-rtd-theme~=3.1; extra == "docs"
+Requires-Dist: sphinx_togglebutton~=0.4.5; extra == "docs"
+Requires-Dist: sphinx_book_theme~=1.2; extra == "docs"
+Requires-Dist: ipympl~=0.10; extra == "docs"
+Requires-Dist: myst-nb~=1.4; extra == "docs"
 Provides-Extra: tests
-Requires-Dist: pytest~=8.4; extra == "tests"
-Requires-Dist: pytest-cov~=7.0; extra == "tests"
-Requires-Dist: pytest-mpl~=0.17; extra == "tests"
+Requires-Dist: pytest~=9.1.1; extra == "tests"
+Requires-Dist: pytest-cov~=7.1.0; extra == "tests"
+Requires-Dist: pytest-mpl~=0.19.0; extra == "tests"
 Dynamic: license-file
 
 [![Line Measurer (LiMe) library.](https://github.com/Vital-Fernandez/lime/blob/0afedb150b0169deec6c7f159def99750a3a30da/docs/source/_static/logo_transparent.png?raw=true)]()

{lime_stable-2.4.0 → lime_stable-2.4.2}/src/lime_stable.egg-info/SOURCES.txt

@@ -29,7 +29,6 @@ src/lime/plotting/utils.py
 src/lime/resources/__init__.py
 src/lime/resources/generator_db.py
 src/lime/resources/generator_logo.py
-src/lime/resources/lines_database_v2.0.0.txt
 src/lime/resources/lines_database_v2.0.6.txt
 src/lime/resources/types_params.txt
 src/lime/retrieve/__init__.py

lime_stable-2.4.2/src/lime_stable.egg-info/requires.txt

@@ -0,0 +1,28 @@
+astropy>=8.0
+lmfit>=1.3
+matplotlib>=3.10
+numpy<3,>=2.0
+pandas<4,>=3.0
+scipy>=1.18
+
+[docs]
+sphinx~=9.1.0
+sphinx-rtd-theme~=3.1
+sphinx_togglebutton~=0.4.5
+sphinx_book_theme~=1.2
+ipympl~=0.10
+myst-nb~=1.4
+
+[full]
+asdf~=4.1
+aspect-stable~=0.8
+bokeh>=3.9
+mplcursors~=0.6
+openpyxl~=3.1
+PyLaTeX~=1.4
+toml~=0.10
+
+[tests]
+pytest~=9.1.1
+pytest-cov~=7.1.0
+pytest-mpl~=0.19.0

{lime_stable-2.4.0 → lime_stable-2.4.2}/tests/test_sample.py

@@ -65,7 +65,7 @@ class TestSampleClass:
 
         ref_lines = ['H1_4861A', 'O3_5007A', 'H1_6563A']
         sample_log_address = f'{tmp_path}/sample_log.txt'
-        sample1.frame['z_line'] = 0
+        sample1.frame['z_line'] = 0.0
         sample1.check.redshift(sample1.frame.index, reference_lines=ref_lines, output_file_log=sample_log_address,
                                output_idcs=sample1.frame.index, redshift_column='z_line', initial_z=0.0475,
                                in_fig=fig)

{lime_stable-2.4.0 → lime_stable-2.4.2}/tests/test_tools.py

@@ -189,6 +189,44 @@ def test_extract_fluxes_multi_index():
     return
 
 
+# def test_redshift_calculation():
+#
+#     # Single index
+#     z_df = lime.redshift_calculation(lines_log)
+#     z_df_eqw = lime.redshift_calculation(lines_log, weight_parameter='eqw')
+#     z_df_flux_gauss = lime.redshift_calculation(lines_log, weight_parameter='profile_flux')
+#     z_df_strong = lime.redshift_calculation(lines_log, line_list=['O3_5007A', 'H1_6563A'])
+#
+#     assert np.allclose(z_df['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
+#     assert np.allclose(z_df_eqw['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
+#     assert np.allclose(z_df_flux_gauss['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
+#     assert np.allclose(z_df_strong['z_mean'][0], 0.047498, atol=0.00024, equal_nan=True)
+#
+#     assert z_df['weight'][0] is None
+#     assert z_df_eqw['weight'][0] == 'eqw'
+#     assert z_df_flux_gauss['weight'][0] == 'profile_flux'
+#     assert z_df_strong['weight'][0] is None
+#     assert z_df_strong['lines'][0] == 'O3_5007A,H1_6563A'
+#
+#     # Multi-index
+#     z_df = lime.redshift_calculation(obs.frame)
+#     z_df_eqw = lime.redshift_calculation(obs.frame, weight_parameter='eqw')
+#     z_df_flux_gauss = lime.redshift_calculation(obs.frame, weight_parameter='profile_flux')
+#     z_df_strong = lime.redshift_calculation(obs.frame, line_list=['O3_5007A', 'H1_6563A'])
+#
+#     assert np.allclose(z_df['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
+#     assert np.allclose(z_df_eqw['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
+#     assert np.allclose(z_df_flux_gauss['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
+#     assert np.allclose(z_df_strong['z_mean'][0], 0.047498, atol=0.00024, equal_nan=True)
+#
+#     assert np.all(z_df['weight'].to_numpy() == None)
+#     assert np.all(z_df_eqw['weight'] == 'eqw')
+#     assert np.all(z_df_flux_gauss['weight'] == 'profile_flux')
+#     assert np.all(z_df_strong['weight'].to_numpy() == None)
+#     assert np.all(z_df_strong['lines'] == 'O3_5007A,H1_6563A')
+#
+#     return
+
 def test_redshift_calculation():
 
     # Single index
@@ -197,16 +235,16 @@ def test_redshift_calculation():
     z_df_flux_gauss = lime.redshift_calculation(lines_log, weight_parameter='profile_flux')
     z_df_strong = lime.redshift_calculation(lines_log, line_list=['O3_5007A', 'H1_6563A'])
 
-    assert np.allclose(z_df['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
-    assert np.allclose(z_df_eqw['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
-    assert np.allclose(z_df_flux_gauss['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
-    assert np.allclose(z_df_strong['z_mean'][0], 0.047498, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df['z_mean'].iloc[0], 0.047526, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df_eqw['z_mean'].iloc[0], 0.047526, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df_flux_gauss['z_mean'].iloc[0], 0.047526, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df_strong['z_mean'].iloc[0], 0.047498, atol=0.00024, equal_nan=True)
 
-    assert z_df['weight'][0] is None
-    assert z_df_eqw['weight'][0] == 'eqw'
-    assert z_df_flux_gauss['weight'][0] == 'profile_flux'
-    assert z_df_strong['weight'][0] is None
-    assert z_df_strong['lines'][0] == 'O3_5007A,H1_6563A'
+    assert z_df['weight'].iloc[0] is None
+    assert z_df_eqw['weight'].iloc[0] == 'eqw'
+    assert z_df_flux_gauss['weight'].iloc[0] == 'profile_flux'
+    assert z_df_strong['weight'].iloc[0] is None
+    assert z_df_strong['lines'].iloc[0] == 'O3_5007A,H1_6563A'
 
     # Multi-index
     z_df = lime.redshift_calculation(obs.frame)
@@ -214,16 +252,16 @@ def test_redshift_calculation():
     z_df_flux_gauss = lime.redshift_calculation(obs.frame, weight_parameter='profile_flux')
     z_df_strong = lime.redshift_calculation(obs.frame, line_list=['O3_5007A', 'H1_6563A'])
 
-    assert np.allclose(z_df['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
-    assert np.allclose(z_df_eqw['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
-    assert np.allclose(z_df_flux_gauss['z_mean'][0], 0.047526, atol=0.00024, equal_nan=True)
-    assert np.allclose(z_df_strong['z_mean'][0], 0.047498, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df['z_mean'].iloc[0], 0.047526, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df_eqw['z_mean'].iloc[0], 0.047526, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df_flux_gauss['z_mean'].iloc[0], 0.047526, atol=0.00024, equal_nan=True)
+    assert np.allclose(z_df_strong['z_mean'].iloc[0], 0.047498, atol=0.00024, equal_nan=True)
 
-    assert np.all(z_df['weight'].to_numpy() == None)
-    assert np.all(z_df_eqw['weight'] == 'eqw')
-    assert np.all(z_df_flux_gauss['weight'] == 'profile_flux')
-    assert np.all(z_df_strong['weight'].to_numpy() == None)
-    assert np.all(z_df_strong['lines'] == 'O3_5007A,H1_6563A')
+    assert z_df['weight'].isna().all()
+    assert (z_df_eqw['weight'] == 'eqw').all()
+    assert (z_df_flux_gauss['weight'] == 'profile_flux').all()
+    assert z_df_strong['weight'].isna().all()
+    assert (z_df_strong['lines'] == 'O3_5007A,H1_6563A').all()
 
     return
 

lime_stable-2.4.0/src/lime/resources/lines_database_v2.0.0.txt

@@ -1,153 +0,0 @@
-                   wavelength       wave_vac             w1             w2             w3             w4             w5             w6                  latex_label units_wave particle trans  rel_int
-H1_1216A          1215.670000    1215.670000    1203.280659    1209.762360    1214.047985    1217.292015    1221.278711    1226.539164         $HI1216\mathring{A}$   Angstrom       H1   rec        1
-O4_1401A          1401.164000    1401.164000    1396.492714    1398.357238    1399.294488    1403.033512    1403.965774    1405.840274       $OIV]1401\mathring{A}$   Angstrom       O4   sem        0
-O4_1405A          1404.813000    1404.813000    1400.129549    1401.998928    1402.938619    1406.687381    1407.622070    1409.501453       $OIV]1405\mathring{A}$   Angstrom       O4   sem        0
-O4_1407A          1407.389000    1407.389000    1402.696961    1404.569768    1405.511182    1409.266818    1410.203221    1412.086050       $OIV]1407\mathring{A}$   Angstrom       O4   sem        0
-N4_1483A          1483.321000    1483.321000    1450.000000    1460.000000    1481.341869    1485.300131    1490.000000    1500.000000      $[NIV]1483\mathring{A}$   Angstrom       N4   col        1
-N4_1486A          1486.496000    1486.496000    1450.000000    1460.000000    1484.512633    1488.479367    1495.000000    1505.000000       $NIV]1486\mathring{A}$   Angstrom       N4   sem        1
-N3_1747A          1746.823000    1746.823000    1740.999335    1743.323826    1744.492290    1749.153710    1750.315955    1752.652884      $NIII]1747\mathring{A}$   Angstrom       N3   sem        1
-N3_1749A          1748.646000    1748.646000    1742.816258    1745.143174    1746.312858    1750.979142    1752.142600    1754.481968      $NIII]1749\mathring{A}$   Angstrom       N3   sem        1
-N3_1750A          1749.674000    1749.674000    1743.840831    1746.169115    1747.339486    1752.008514    1753.172656    1755.513399      $NIII]1750\mathring{A}$   Angstrom       N3   sem        1
-N3_1752A          1752.160000    1752.160000    1746.318543    1748.650135    1749.822169    1754.497831    1755.663627    1758.007696      $NIII]1752\mathring{A}$   Angstrom       N3   sem        1
-N3_1754A          1753.995000    1753.995000    1748.147425    1750.481459    1751.654721    1756.335279    1757.502296    1759.848820      $NIII]1754\mathring{A}$   Angstrom       N3   sem        1
-C4_1548A          1548.203000    1548.203000    1440.000000    1450.000000    1546.137300    1550.268700    1600.000000    1650.000000      $[CIV]1548\mathring{A}$   Angstrom       C4   rec        1
-C4_1551A          1550.777000    1550.777000    1545.606925    1547.670538    1548.707866    1552.846134    1553.877940    1555.952596      $[CIV]1551\mathring{A}$   Angstrom       C4   col        1
-He2_1640A         1640.420000    1640.420000    1600.000000    1630.000000    1638.231259    1642.608741    1700.000000    1750.000000       $HeII1640\mathring{A}$   Angstrom      He2   rec        1
-O3_1661A          1660.809200    1660.809200    1655.272293    1657.482325    1658.593255    1663.025145    1664.130161    1666.352020      $OIII]1661\mathring{A}$   Angstrom       O3   sem        1
-O3_1666A          1666.149700    1666.149700    1600.000000    1630.000000    1663.926629    1668.372771    1700.000000    1750.000000      $OIII]1666\mathring{A}$   Angstrom       O3   sem        1
-S3_1713A          1713.113700    1713.113700    1707.402418    1709.682051    1710.827967    1715.399433    1716.539250    1718.831082      $SIII]1713\mathring{A}$   Angstrom       S3   sem        0
-S3_1729A          1728.941500    1728.941500    1723.177450    1725.478145    1726.634649    1731.248351    1732.398699    1734.711706      $SIII]1729\mathring{A}$   Angstrom       S3   sem        0
-C3_1907A          1906.683000    1906.683000    1900.326384    1902.863600    1904.138996    1909.227004    1910.495612    1913.046404      $CIII]1907\mathring{A}$   Angstrom       C3   sem        1
-C3_1909A          1908.734000    1908.734000    1870.000000    1895.000000    1906.187259    1911.280741    1930.000000    1950.000000      $CIII]1909\mathring{A}$   Angstrom       C3   sem        1
-O2_2470A          2470.181000    2470.966000    2461.945761    2465.232820    2466.885145    2473.476855    2475.120385    2478.425034      $[OII]2470\mathring{A}$   Angstrom       O2   col        0
-O2_2470.3A        2470.303000    2471.088000    2462.067354    2465.354576    2467.006982    2473.599018    2475.242629    2478.547442      $[OII]2470\mathring{A}$   Angstrom       O2   col        0
-Mg2_2795A         2795.484000    2796.352000    2786.164246    2789.884185    2791.754108    2799.213892    2801.073862    2804.813708     $[MgII]2795\mathring{A}$   Angstrom      Mg2   col        0
-Mg2_2803A         2802.661000    2803.531000    2700.000000    2750.000000    2798.921532    2806.400468    2850.000000    2900.000000     $[MgII]2803\mathring{A}$   Angstrom      Mg2   col        1
-Ne5_3345A         3345.400000    3346.400000    3334.246902    3338.698612    3340.936379    3349.863621    3352.089476    3356.565009      $[NeV]3345\mathring{A}$   Angstrom      Ne5   col        0
-Ne5_3426A         3425.500000    3426.500000    3390.000000    3410.000000    3420.929505    3430.070495    3445.000000    3465.000000      $[NeV]3426\mathring{A}$   Angstrom      Ne5   col        0
-H1_3704A          3703.794000    3704.906000    3671.309441    3681.364925    3698.852189    3708.735811    3758.000000    3764.000000         $HI3704\mathring{A}$   Angstrom       H1   rec        1
-H1_3722A          3721.938000    3722.997000    3665.750000    3694.260000    3721.002595    3730.945405    3754.880000    3767.500000         $HI3750\mathring{A}$   Angstrom       H1   rec        0
-O2_3726A          3725.974000    3727.092000    3665.750000    3694.260000    3721.002595    3730.945405    3754.880000    3767.500000      $[OII]3726\mathring{A}$   Angstrom       O2   col        1
-O2_3729A          3728.756000    3729.875000    3665.750000    3694.260000    3723.780884    3733.731116    3754.880000    3767.500000      $[OII]3729\mathring{A}$   Angstrom       O2   col        1
-H1_3734A          3734.368000    3735.430000    3665.750000    3694.260000    3721.002595    3730.945405    3754.880000    3767.500000         $HI3750\mathring{A}$   Angstrom       H1   rec        0
-H1_3750A          3750.092000    3751.217000    3664.503848    3675.720417    3745.088416    3755.095584    3775.220000    3792.040000         $HI3750\mathring{A}$   Angstrom       H1   rec        1
-H1_3771A          3770.571000    3771.701000    3758.000441    3763.017925    3765.540092    3775.601908    3778.110650    3783.154984         $HI3771\mathring{A}$   Angstrom       H1   rec        1
-H1_3798A          3797.838000    3798.976000    3780.949179    3792.078244    3792.770710    3802.905290    3807.127865    3816.774280         $HI3798\mathring{A}$   Angstrom       H1   rec        1
-H1_3835A          3835.324000    3836.472000    3823.148476    3829.538777    3830.206694    3840.441306    3844.260000    3852.830000         $HI3835\mathring{A}$   Angstrom       H1   rec        1
-Ne3_3869A         3869.000000    3870.160000    3848.429950    3858.099497    3863.837762    3874.162238    3895.538694    3910.048413    $[NeIII]3869\mathring{A}$   Angstrom      Ne3   col        1
-He1_3889A         3888.584917    3889.747508    3842.087829    3861.282614    3883.396548    3893.773287    3905.000000    3950.000000        $HeI3889\mathring{A}$   Angstrom      He1   rec        1
-H1_3889A          3888.988000    3890.151000    3842.087829    3861.282614    3883.799093    3894.176907    3905.000000    3950.000000         $HI3889\mathring{A}$   Angstrom       H1   rec        1
-Ne3_3968A         3967.730000    3968.910000    3954.502141    3959.781983    3962.436031    3973.023969    3975.663890    3980.971986    $[NeIII]3968\mathring{A}$   Angstrom      Ne3   col        1
-H1_3970A          3970.010000    3971.195000    3945.566344    3957.862489    3964.712989    3975.307011    3979.317175    3989.942405         $HI3970\mathring{A}$   Angstrom       H1   rec        1
-Fe3_4008A         4008.270000    4009.470000    3994.906986    4000.240775    4002.921940    4013.618060    4016.284954    4021.647285    $[FeIII]4008\mathring{A}$   Angstrom      Fe3   rec        1
-He1_4026A         4026.123000    4027.323000    4012.700467    4018.058012    4020.751120    4031.494880    4034.173653    4039.559868        $HeI4026\mathring{A}$   Angstrom      He1   rec        1
-S2_4069A          4068.537000    4069.749000    4054.973064    4060.387050    4063.108529    4073.965471    4076.672464    4082.115422      $[SII]4069\mathring{A}$   Angstrom       S2   col        1
-S2_4076A          4076.300000    4077.500000    4062.710184    4068.134499    4070.861171    4081.738829    4084.450987    4089.904330      $[SII]4076\mathring{A}$   Angstrom       S2   col        0
-H1_4102A          4101.671000    4102.892000    4084.633589    4093.799103    4096.198319    4107.143681    4110.113141    4119.294537         $HI4102\mathring{A}$   Angstrom       H1   rec        1
-Fe2_4287A         4287.326780    4288.599580    4273.033430    4278.738558    4281.606387    4293.047173    4295.899737    4301.635395     $[FeII]4287\mathring{A}$   Angstrom      Fe2   col        1
-H1_4340A          4340.396000    4341.684000    4322.549217    4332.509864    4334.604799    4346.187201    4350.262697    4360.488238         $HI4340\mathring{A}$   Angstrom       H1   rec        1
-Fe2_4358A         4358.028800    4359.321200    4343.499739    4349.298950    4352.214072    4363.843528    4366.743133    4372.573378     $[FeII]4358\mathring{A}$   Angstrom      Fe2   col        0
-O3_4363A          4363.142000    4364.436000    4297.700000    4323.660000    4357.320450    4368.963550    4390.760000    4416.200000     $[OIII]4363\mathring{A}$   Angstrom       O3   col        1
-He1_4388A         4388.080339    4389.381125    4373.451090    4379.290291    4382.225515    4393.935163    4396.854763    4402.725211        $HeI4388\mathring{A}$   Angstrom      He1   rec        1
-He1_4471A         4471.404000    4472.728000    4451.913360    4465.069336    4465.438001    4477.369999    4480.772156    4496.909458        $HeI4471\mathring{A}$   Angstrom      He1   rec        1
-Fe3_4658A         4658.090000    4659.470000    4637.507567    4650.238986    4651.874914    4664.305086    4669.709024    4679.097970    $[FeIII]4658\mathring{A}$   Angstrom      Fe3   col        1
-He2_4686A         4685.640000    4687.020000    4663.804252    4678.301808    4679.388155    4691.891845    4718.751912    4733.650293       $HeII4686\mathring{A}$   Angstrom      He2   rec        1
-Ar4_4711A         4711.300000    4712.690000    4664.639652    4680.894598    4705.013918    4717.586082    4723.932671    4738.660669     $[ArIV]4711\mathring{A}$   Angstrom      Ar4   col        1
-He1_4713A         4713.083425    4714.474819    4697.370661    4703.642342    4706.794963    4719.371887    4722.507727    4728.812970        $HeI4713\mathring{A}$   Angstrom      He1   rec        1
-Ar4_4740A         4740.090000    4741.490000    4724.287200    4730.594819    4733.765505    4746.414495    4749.568304    4755.909677     $[ArIV]4740\mathring{A}$   Angstrom      Ar4   col        1
-H1_4861A          4861.250000    4862.683000    4809.800000    4836.100000    4854.763846    4867.736154    4883.130000    4908.400000         $HI4861\mathring{A}$   Angstrom       H1   rec        1
-Fe3_4881A         4880.998000    4882.436000    4864.725433    4871.220557    4874.485497    4887.510503    4890.758065    4897.287946    $[FeIII]4881\mathring{A}$   Angstrom      Fe3   col        1
-He1_4922A         4922.333000    4923.783000    4905.922627    4912.472756    4915.765346    4928.900654    4932.175718    4938.760898        $HeI4922\mathring{A}$   Angstrom      He1   rec        1
-Fe3_4925A         4924.580000    4926.031000    4908.162136    4914.715255    4918.009348    4931.150652    4934.427211    4941.015398    $[FeIII]4925\mathring{A}$   Angstrom      Fe3   col        1
-O3_4959A          4958.835000    4960.295000    4929.281844    4946.732665    4952.218643    4965.451357    4972.820372    4984.416360     $[OIII]4959\mathring{A}$   Angstrom       O3   col        1
-Fe3_4986A         4985.800000    4987.270000    4969.178037    4975.812621    4979.147665    4992.452335    4995.769627    5002.439715    $[FeIII]4986\mathring{A}$   Angstrom      Fe3   col        0
-O3_5007A          5006.770000    5008.240000    4971.796688    4984.514249    5000.089685    5013.450315    5027.743260    5043.797081     $[OIII]5007\mathring{A}$   Angstrom       O3   col        1
-He1_5016A         5015.600000    5017.080000    4998.878688    5005.552927    5008.907904    5022.292096    5025.629215    5032.339170        $HeI5016\mathring{A}$   Angstrom      He1   rec        1
-Ar3_5192A         5191.740000    5193.270000    5174.431462    5181.340089    5184.812888    5198.667112    5202.121426    5209.067023    $[ArIII]5192\mathring{A}$   Angstrom      Ar3   col        0
-N1_5198A          5197.822000    5199.349000    5180.493185    5187.409906    5190.886773    5204.757227    5208.215587    5215.169321       $[NI]5198\mathring{A}$   Angstrom       N1   col        1
-N1_5200A          5200.177600    5201.705500    5182.840932    5189.760787    5193.239230    5207.115970    5210.575898    5217.532783       $[NI]5200\mathring{A}$   Angstrom       N1   col        1
-N2_5755A          5754.560000    5756.240000    5700.000000    5720.000000    5746.881942    5762.238058    5800.000000    5820.000000      $[NII]5755\mathring{A}$   Angstrom       N2   col        1
-He1_5876A         5875.535200    5877.253500    5845.715833    5865.712378    5867.695730    5883.374670    5888.378245    5901.854752        $HeI5876\mathring{A}$   Angstrom      He1   rec        1
-O1_6300A          6300.208000    6302.046000    6270.921363    6282.896208    6291.801907    6308.614093    6326.667186    6338.205448       $[OI]6300\mathring{A}$   Angstrom       O1   col        1
-S3_6312A          6312.000000    6313.800000    6270.921363    6282.896208    6303.578174    6320.421826    6326.667186    6338.205448     $[SIII]6312\mathring{A}$   Angstrom       S3   col        1
-N2_6548A          6547.940000    6549.850000    6480.030000    6520.660000    6539.203369    6556.676631    6627.700000    6661.820000      $[NII]6548\mathring{A}$   Angstrom       N2   col        1
-H1_6563A          6562.700000    6564.610000    6480.030000    6520.660000    6553.943676    6571.456324    6627.700000    6661.820000         $HI6563\mathring{A}$   Angstrom       H1   rec        1
-N2_6583A          6583.360000    6585.280000    6480.030000    6520.660000    6574.576110    6592.143890    6627.700000    6661.820000      $[NII]6583\mathring{A}$   Angstrom       N2   col        1
-He1_6677A         6676.875300    6678.820500    6654.615528    6663.500418    6667.966637    6685.783963    6690.226409    6699.158845        $HeI6677\mathring{A}$   Angstrom      He1   rec        1
-S2_6716A          6716.330000    6718.290000    6686.785257    6706.310255    6707.368694    6725.291306    6744.438091    6759.956250      $[SII]6716\mathring{A}$   Angstrom       S2   col        1
-S2_6731A          6730.710000    6732.670000    6686.785257    6706.310255    6721.729507    6739.690493    6744.438091    6759.956250      $[SII]6731\mathring{A}$   Angstrom       S2   col        1
-He1_7065A         7065.108000    7067.163000    7029.100000    7041.640000    7055.681335    7074.534665    7087.490000    7104.450000        $HeI7065\mathring{A}$   Angstrom      He1   rec        1
-Ar3_7136A         7135.700000    7137.800000    7099.804897    7122.016894    7126.179147    7145.220853    7149.984073    7166.354990    $[ArIII]7136\mathring{A}$   Angstrom      Ar3   col        1
-O2_7319A          7318.810000    7320.940000    7286.410854    7298.535385    7309.044831    7328.575169    7357.871653    7373.463900      $[OII]7319\mathring{A}$   Angstrom       O2   col        1
-O2_7320A          7319.880000    7322.010000    7286.410854    7298.535385    7310.113403    7329.646597    7357.871653    7373.463900      $[OII]7320\mathring{A}$   Angstrom       O2   col        0
-O2_7330A          7329.550000    7331.680000    7286.410854    7298.535385    7319.770501    7339.329499    7357.871653    7373.463900      $[OII]7330\mathring{A}$   Angstrom       O2   col        1
-O2_7331A          7330.620000    7332.750000    7286.410854    7298.535385    7320.839073    7340.400927    7357.871653    7373.463900      $[OII]7331\mathring{A}$   Angstrom       O2   col        0
-Ar3_7751A         7750.900000    7753.200000    7725.059579    7735.373670    7740.558312    7761.241688    7766.398733    7776.768018    $[ArIII]7751\mathring{A}$   Angstrom      Ar3   col        1
-H1_8392A          8392.269000    8394.702000    8364.290344    8375.457902    8381.071562    8403.466438    8409.050217    8420.277536         $HI8392\mathring{A}$   Angstrom       H1   rec        1
-H1_8413A          8413.190000    8415.629000    8385.141596    8396.336994    8401.964648    8424.415352    8430.013051    8441.268359         $HI8413\mathring{A}$   Angstrom       H1   rec        0
-H1_8438A          8437.827000    8440.273000    8396.910000    8408.320000    8426.568775    8449.085225    8452.150208    8464.463395         $HI8438\mathring{A}$   Angstrom       H1   rec        0
-H1_8467A          8467.130000    8469.580000    8438.901768    8450.168943    8455.832678    8478.427322    8484.060910    8495.388379         $HI8467\mathring{A}$   Angstrom       H1   rec        0
-H1_8502A          8502.354000    8504.819000    8474.008336    8485.322384    8491.009680    8513.698320    8519.355344    8530.729936         $HI8502\mathring{A}$   Angstrom       H1   rec        0
-H1_8545A          8545.250000    8547.730000    8516.761327    8528.132456    8533.848446    8556.651554    8562.337119    8573.769098         $HI8545\mathring{A}$   Angstrom       H1   rec        0
-H1_8598A          8598.262000    8600.754000    8569.596592    8581.038264    8586.789714    8609.734286    8615.455122    8626.958022         $HI8598\mathring{A}$   Angstrom       H1   rec        0
-H1_8665A          8664.887000    8667.398000    8635.999474    8647.529803    8653.325819    8676.448181    8682.213346    8693.805378         $HI8665\mathring{A}$   Angstrom       H1   rec        0
-H1_8750A          8750.339000    8752.875000    8721.166589    8732.810629    8738.663804    8762.014196    8767.836216    8779.542567         $HI8750\mathring{A}$   Angstrom       H1   rec        1
-H1_8863A          8862.649000    8865.217000    8826.510933    8849.703031    8850.823954    8874.474046    8875.570594    8886.725336         $HI8863\mathring{A}$   Angstrom       H1   rec        1
-H1_9015A          9014.774000    9017.385000    8975.870000    9001.890000    9002.745980    9026.802020    9029.944250    9048.681886         $HI9015\mathring{A}$   Angstrom       H1   rec        1
-S3_9068A          9068.500000    9071.100000    9028.280000    9056.360000    9056.400296    9080.599704    9083.325784    9100.603298     $[SIII]9068\mathring{A}$   Angstrom       S3   col        1
-H1_9229A          9228.875000    9231.547000    9198.107216    9210.388042    9216.561315    9241.188685    9247.329098    9259.675643         $HI9229\mathring{A}$   Angstrom       H1   rec        1
-S3_9530A          9530.400000    9533.200000    9471.122554    9489.978978    9517.684003    9543.115997    9569.193420    9600.501253     $[SIII]9530\mathring{A}$   Angstrom       S3   col        1
-H1_9546A          9545.830000    9548.590000    9471.122554    9489.978978    9533.093415    9558.566585    9569.193420    9600.501253         $HI9546\mathring{A}$   Angstrom       H1   rec        1
-H1_10052A        10052.128000   10052.128000    9963.330920   10014.100110   10038.715884   10065.540116   10085.683630   10157.030360        $HI10052\mathring{A}$   Angstrom       H1   rec        1
-He1_10832A       10832.057000   10832.057000   10753.419250   10794.263650   10817.604259   10846.509741   10856.984350   10895.058030       $HeI10832\mathring{A}$   Angstrom      He1   rec        1
-H1_10941A        10941.090000   10941.090000   10720.442470   10778.669070   10926.491781   10955.688219   11006.496460   11117.881210        $HI10941\mathring{A}$   Angstrom       H1   rec        1
-O1_11290A        11290.000000   11290.000000   11200.000000   11260.000000   11274.936245   11305.063755   11310.000000   11370.000000      $[OI]11290\mathring{A}$   Angstrom       O1   col        1
-Fe2_12570A       12570.206800   12570.206800   12528.299481   12545.026604   12553.434921   12586.978679   12595.342240   12612.158875    $[FeII]12570\mathring{A}$   Angstrom      Fe2   col        1
-H1_12822A        12821.590000   12821.590000   12707.118358   12770.347194   12804.482712   12838.697288   12883.388729   12974.122245        $HI12822\mathring{A}$   Angstrom       H1   rec        1
-Fe2_16440A       16440.016900   16440.016900   16385.208174   16407.084837   16418.081703   16461.952097   16472.890429   16494.884161    $[FeII]16440\mathring{A}$   Angstrom      Fe2   col        1
-H1_18756A        18756.130000   18756.130000   18609.558032   18656.837942   18731.104514   18781.155486   18813.400465   18894.450760        $HI18756\mathring{A}$   Angstrom       H1   rec        1
-H1_19451A        19450.871000   19450.871000   19316.427400   19392.542082   19424.918551   19476.823449   19488.494259   19546.645072        $HI19451\mathring{A}$   Angstrom       H1   rec        1
-H2_19570A        19570.000000   19570.000000   19317.214761   19417.398018   19543.888603   19596.111397   19622.326345   19678.132739     $[HII]19570\mathring{A}$   Angstrom       H2   col        1
-Si6_19650A       19650.000000   19650.000000   19584.489637   19610.637811   19623.781862   19676.218138   19689.292225   19715.580326    $[SiVI]19650\mathring{A}$   Angstrom      Si6   col        1
-He1_20587A       20586.900000   20586.900000   20436.136293   20506.474038   20559.431797   20614.368203   20638.302080   20718.624046       $HeI20587\mathring{A}$   Angstrom      He1   rec        1
-H2_21220A        21220.000000   21220.000000   21098.000543   21169.879588   21191.687080   21248.312920   21276.821582   21329.416005     $[HII]21220\mathring{A}$   Angstrom       H2   col        1
-H1_21661A        21661.200000   21661.200000   21519.246668   21614.386714   21632.298406   21690.101594   21726.878918   21795.633622        $HI21661\mathring{A}$   Angstrom       H1   rec        1
-H2_24045A        24044.967960   24044.967960   23964.805386   23996.801926   24012.885808   24077.050112   24093.048382   24125.216146     $[HII]24045\mathring{A}$   Angstrom       H2   PAH        1
-H1_26259A        26258.670000   26258.670000   26200.000000   26220.000000   26223.634202   26293.705798   26300.000000   26320.000000        $HI26259\mathring{A}$   Angstrom       H1   rec        1
-H1_30392A        30392.022000   30392.022000   30290.699232   30331.141771   30351.471251   30432.572749   30452.794019   30493.452978        $HI30392\mathring{A}$   Angstrom       H1   rec        1
-H1_32970A        32969.920000   32969.920000   32860.002879   32903.875816   32925.929674   33013.910326   33035.846795   33079.954510        $HI32970\mathring{A}$   Angstrom       H1   rec        1
-PAH_33000A       33000.000000   33000.000000   30800.000000   30850.000000   30900.000000   35200.000000   35350.000000   35400.000000      PAH-$33000\mathring{A}$   Angstrom      PAH   col        1
-H1_37406A        37405.560000   37405.560000   37280.855073   37330.630498   37355.651393   37455.468607   37480.356320   37530.398109        $HI37406\mathring{A}$   Angstrom       H1   rec        1
-H1_40523A        40522.620000   40522.620000   40387.523229   40441.446514   40468.552436   40576.687564   40603.649206   40657.861051        $HI40523\mathring{A}$   Angstrom       H1   rec        1
-H1_46538A        46537.780000   46537.780000   46382.629524   46444.557157   46475.686670   46599.873330   46630.837146   46693.096173        $HI46538\mathring{A}$   Angstrom       H1   rec        1
-H2-S8_50531A     50531.151550   50531.151550   50230.000000   50330.000000   50463.730039   50598.573061   50730.000000   50830.000000    H2-S8-$50531\mathring{A}$   Angstrom    H2-S8   mol        1
-He2_52280A       52279.970000   52279.970000   52105.675862   52175.244604   52210.215116   52349.724884   52384.509254   52454.450280      $HeII52280\mathring{A}$   Angstrom      He2   rec        1
-Fe2_53402A       53401.693000   53401.693000   53145.938288   53241.460874   53330.441450   53472.944550   53570.597313   53635.795269    $[FeII]53402\mathring{A}$   Angstrom      Fe2   col        1
-Fe8_54470A       54470.000000   54470.000000   54053.226773   54190.024550   54397.323055   54542.676945   54748.651269   54904.823115  $[FeVIII]54470\mathring{A}$   Angstrom      Fe8   col        1
-Mg7_55033A       55033.000000   55033.000000   54778.036527   54898.913873   54959.571869   55106.428131   55299.024808   55364.222763   $[MgVII]55033\mathring{A}$   Angstrom      Mg7   col        1
-H2-S7_55112A     55111.832590   55111.832590   54883.745676   54943.552586   55038.299276   55185.365904   55228.610422   55332.851338    H2-S7-$55112\mathring{A}$   Angstrom    H2-S7   mol        1
-Mg5_56098A       56098.000000   56098.000000   55793.213215   55905.498582   56023.150886   56172.849114   56247.399697   56430.611005     $[MgV]56098\mathring{A}$   Angstrom      Mg5   col        1
-H2-S6_61086A     61085.638400   61085.638400   60825.445324   60937.477986   61004.134497   61167.142303   61211.296132   61316.337282    H2-S6-$61086\mathring{A}$   Angstrom    H2-S6   mol        1
-PAH_62000A       62000.000000   62000.000000   58700.000000   58800.000000   59000.000000   65000.000000   65100.000000   65200.000000      PAH-$62000\mathring{A}$   Angstrom      PAH   PAH        1
-H2-S5_69095A     69095.085490   69095.085490   68800.000000   68900.000000   69002.894931   69187.276049   69288.522754   69397.186012    H2-S5-$69095\mathring{A}$   Angstrom    H2-S5   mol        1
-Ar2_69853A       69852.740000   69852.740000   69535.937925   69637.356966   69759.538536   69945.941464   70032.317091   70124.975684    $[ArII]69853\mathring{A}$   Angstrom      Ar2   col        1
-HI_74599A        74598.580000   74598.580000   74338.934632   74469.930721   74499.046369   74698.113631   74735.089766   74910.640952       HI-$74599\mathring{A}$   Angstrom       HI   rec        1
-Ne6_76524A       76524.000000   76524.000000   76193.555622   76289.646797   76421.897365   76626.102635   76640.749167   76759.015228    $[NeVI]76524\mathring{A}$   Angstrom      Ne6   col        1
-PAH_77000A       77000.000000   77000.000000   68700.000000   68800.000000   69000.000000   97000.000000   97200.000000   97300.000000      PAH-$77000\mathring{A}$   Angstrom      PAH   PAH        1
-Fe7_78130A       78130.000000   78130.000000   77819.173875   77953.318250   78025.754549   78234.245451   78319.527908   78481.048687   $[FeVII]78130\mathring{A}$   Angstrom      Fe7   col        1
-Ar5_79016A       79015.800000   79015.800000   78752.372329   78857.518330   78910.372665   79121.227335   79173.800336   79279.509005     $[ArV]79016\mathring{A}$   Angstrom      Ar5   col        1
-H2-S4_80250A     80250.410360   80250.410360   79957.819686   80072.800579   80143.335738   80357.484982   80421.575955   80548.054938    H2-S4-$80250\mathring{A}$   Angstrom    H2-S4   mol        1
-Ar3_89914A       89913.800000   89913.800000   89566.734578   89651.053900   89793.831939   90033.768061   90087.416206   90235.248783   $[ArIII]89914\mathring{A}$   Angstrom      Ar3   col        1
-H2-S3_96649A     96649.109180   96649.109180   96254.067180   96453.367395   96520.154489   96778.063871   96842.512966   97021.349319    H2-S3-$96649\mathring{A}$   Angstrom    H2-S3   mol        1
-S4_105105A      105104.900000  105104.900000  104697.342144  104808.558782  104964.663117  105245.136883  105326.779318  105471.326727    $[SIV]105105\mathring{A}$   Angstrom       S4   col        1
-PAH_112000A     112000.000000  112000.000000  107700.000000  107800.000000  108000.000000  117000.000000  117200.000000  117300.000000     PAH-$112000\mathring{A}$   Angstrom      PAH   PAH        1
-H2-S2_122786A   122786.119910  122786.119910  122403.521608  122597.909523  122622.291746  122949.948074  122998.001975  123194.368953   H2-S2-$122786\mathring{A}$   Angstrom    H2-S2   mol        1
-Ne2_128135A     128135.480000  128135.480000  127733.371970  127841.780615  127964.514418  128306.445582  128423.006704  128630.808265   $[NeII]128135\mathring{A}$   Angstrom      Ne2   col        1
-Ne5_143217A     143216.800000  143216.800000  142800.483633  142942.536340  143025.712071  143407.887929  143423.009344  143594.308197    $[NeV]143217\mathring{A}$   Angstrom      Ne5   col        1
-Ne3_155550A     155550.500000  155550.500000  155008.881230  155234.494353  155342.955753  155758.044247  155941.891863  156103.735195  $[NeIII]155550\mathring{A}$   Angstrom      Ne3   col        1
-PAH_170000A     170000.000000  170000.000000  154700.000000  154800.000000  155000.000000  185000.000000  185200.000000  185300.000000     PAH-$170000\mathring{A}$   Angstrom      PAH   PAH        1
-H2-S1_170348A   170348.457560  170348.457560  169780.539530  170007.221524  170121.169044  170575.746076  170689.087074  170916.982112   H2-S1-$170348\mathring{A}$   Angstrom    H2-S1   mol        1
-S3_187130A      187130.300000  187130.300000  186289.064584  186679.342348  186880.620203  187379.979797  187500.313181  187909.350378   $[SIII]187130\mathring{A}$   Angstrom       S3   col        1
-Ne5_243175A     243175.000000  243175.000000  242364.288421  242687.880397  242850.542205  243499.457795  243661.253783  243986.577398    $[NeV]243175\mathring{A}$   Angstrom      Ne5   col        1
-O4_225800A      225800.000000  225800.000000  225047.214251  225347.685386  225498.724909  226101.275091  226251.510658  226553.589705    $[OIV]225800\mathring{A}$   Angstrom       O4   col        1
-H2-S0_282188A   282188.437930  282188.437930  281247.660983  281623.167981  281811.926206  282564.949654  282752.703153  283130.219603   H2-S0-$282188\mathring{A}$   Angstrom    H2-S0   mol        1

lime_stable-2.4.0/src/lime_stable.egg-info/requires.txt

@@ -1,27 +0,0 @@
-astropy~=7.1
-lmfit~=1.3
-matplotlib~=3.10
-numpy~=2.3
-pandas~=2.2
-scipy~=1.16
-
-[docs]
-sphinx-rtd-theme~=3.0
-sphinx_togglebutton~=0.3
-sphinx_book_theme~=1.1
-ipympl~=0.9
-myst-nb~=1.3
-
-[full]
-asdf~=4.1
-aspect-stable~=0.8
-bokeh~=3.8
-mplcursors~=0.6
-openpyxl~=3.1
-PyLaTeX~=1.4
-toml~=0.10
-
-[tests]
-pytest~=8.4
-pytest-cov~=7.0
-pytest-mpl~=0.17