lime-stable 2.0.dev1__tar.gz → 2.0.dev2__tar.gz

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Files changed (50) hide show
  1. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/MANIFEST.in +1 -1
  2. {lime_stable-2.0.dev1/src/lime_stable.egg-info → lime_stable-2.0.dev2}/PKG-INFO +1 -1
  3. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/pyproject.toml +1 -1
  4. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/lime.toml +1 -1
  5. lime_stable-2.0.dev2/src/lime/plotting/theme_lime.toml +131 -0
  6. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2/src/lime_stable.egg-info}/PKG-INFO +1 -1
  7. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime_stable.egg-info/SOURCES.txt +1 -0
  8. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/LICENSE.rst +0 -0
  9. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/README.rst +0 -0
  10. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/setup.cfg +0 -0
  11. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/__init__.py +0 -0
  12. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/archives/__init__.py +0 -0
  13. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/archives/read_fits.py +0 -0
  14. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/archives/tables.py +0 -0
  15. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/changelog.txt +0 -0
  16. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/fitting/__init__.py +0 -0
  17. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/fitting/lines.py +0 -0
  18. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/fitting/redshift.py +0 -0
  19. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/inference/detection.py +0 -0
  20. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/inference/intensity_threshold.py +0 -0
  21. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/io.py +0 -0
  22. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/observations.py +0 -0
  23. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/plotting/__init__.py +0 -0
  24. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/plotting/bokeh_plots.py +0 -0
  25. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/plotting/format.py +0 -0
  26. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/plotting/plots.py +0 -0
  27. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/plotting/plots_interactive.py +0 -0
  28. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/plotting/utils.py +0 -0
  29. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/resources/__init__.py +0 -0
  30. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/resources/lines_database_formatting.py +0 -0
  31. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/resources/lines_database_v2.0.0.txt +0 -0
  32. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/resources/logo.py +0 -0
  33. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/resources/types_params.txt +0 -0
  34. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/retrieve/__init__.py +0 -0
  35. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/retrieve/peaks.py +0 -0
  36. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/tools.py +0 -0
  37. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/transitions.py +0 -0
  38. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime/workflow.py +0 -0
  39. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime_stable.egg-info/dependency_links.txt +0 -0
  40. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime_stable.egg-info/requires.txt +0 -0
  41. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/src/lime_stable.egg-info/top_level.txt +0 -0
  42. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_astro.py +0 -0
  43. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_cube.py +0 -0
  44. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_io.py +0 -0
  45. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_line.py +0 -0
  46. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_model.py +0 -0
  47. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_read_fits.py +0 -0
  48. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_sample.py +0 -0
  49. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_spectrum.py +0 -0
  50. {lime_stable-2.0.dev1 → lime_stable-2.0.dev2}/tests/test_tools.py +0 -0
@@ -4,4 +4,4 @@ include src/lime/changelog.txt
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  include src/lime/resources/parent_mask.txt
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  include src/lime/resources/types_params.txt
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  include src/lime/resources/lines_database_v2.0.0.txt
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- include src/lime/plotting/lime_theme.toml
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+ include src/lime/plotting/theme_lime.toml
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lime-stable
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- Version: 2.0.dev1
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+ Version: 2.0.dev2
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  Summary: Line measuring algorithm for astronomical spectra
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  Author-email: Vital Fernández <vgf@umich.edu>
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  License-Expression: GPL-3.0-or-later
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "lime-stable"
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- version = "2.0.dev1"
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+ version = "2.0.dev2"
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  readme = "README.rst"
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  requires-python = ">=3.11"
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  license = "GPL-3.0-or-later"
@@ -1,3 +1,3 @@
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  [metadata]
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  name = 'lime-stable'
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- version = '2.0.0'
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+ version = "2.0.dev2"
@@ -0,0 +1,131 @@
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+ [matplotlib] # Figure format
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+ default."figure.dpi" = 200
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+ default."figure.figsize" = [4.85, 3]
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+ default."axes.titlesize" = 9
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+ default."axes.labelsize" = 9
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+ default."legend.fontsize" = 7
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+ default."xtick.labelsize" = 8
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+ default."ytick.labelsize" = 8
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+ default."font.size" = 5
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+
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+ [matplotlib.size] # Figure elements size
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+ default."single_width" = '1'
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+ default."comp_width" = '0.75'
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+ default."err_width" = '2'
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+ default."cont_width" = '0.5'
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+ default."spectrum_width" = '0.75'
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+ default."textsize_notes" = 4
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+
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+ [matplotlib.colors] # Theme format
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+ "figure.facecolor" = "bg"
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+ "axes.facecolor" = "bg"
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+ "axes.edgecolor" = "fg"
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+ "axes.labelcolor" = "fg"
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+ "xtick.labelcolor" = "fg"
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+ "ytick.labelcolor" = "fg"
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+ 'xtick.color'= "fg"
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+ 'ytick.color'= "fg"
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+ "text.color" = "fg"
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+ "legend.edgecolor" = "inherit"
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+ "legend.facecolor" = "inherit"
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+
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+ [matplotlib.figure.bands] # Individual figure format
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+ "axes.labelsize" = 8
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+ "legend.fontsize" = 5
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+
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+ [matplotlib.figure.cube_interactive] # Individual figure format
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+ 'figure.figsize' = [6.85, 3]
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+ 'axes.titlesize' = 6
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+ 'legend.fontsize' = 6
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+ 'axes.labelsize' = 6
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+ 'xtick.labelsize' = 4
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+ 'ytick.labelsize' = 4
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+ "contour.linewidth" = 0.75
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+ "axes.labelpad" = 1
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+
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+ [matplotlib.figure.grid] # Individual figure format
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+ "axes.titlesize" = 6
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+ "axes.titlepad" = 1
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+
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+ [matplotlib.figure.cube]
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+ "legend.fontsize" = 5
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+ "axes.titlesize" = 6
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+ "axes.labelsize" = 6
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+ "xtick.labelsize" = 4
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+ "ytick.labelsize" = 4
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+
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+ [bokeh]
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+ default."width" = 600
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+ default."height" = 300
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+ default."tools" = 'fullscreen,pan,wheel_zoom,box_zoom,xzoom_in,yzoom_in,reset,save'
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+ #default."tools" = 'zoom_in,xzoom_in,yzoom_in,xwheel_zoom,ywheel_zoom,reset'
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+
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+
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+ [bokeh.size] # Figure elements size
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+ default."single_width" = '1'
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+ default."comp_width" = '0.75'
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+ default."err_width" = '2'
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+ default."cont_width" = '0.5'
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+ default."spectrum_width" = '0.75'
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+ default."textsize_notes" = 4
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+
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+ [bokeh.colors]
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+ background_fill_color = "bg"
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+ border_fill_color = "bg"
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+
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+ outline_line_color = "fg"
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+ xaxis.axis_label_text_color = "fg"
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+ yaxis.axis_label_text_color = "fg"
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+ xaxis.major_label_text_color = "fg"
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+ yaxis.major_label_text_color = "fg"
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+
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+ xaxis.axis_line_color = "fg"
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+ yaxis.axis_line_color = "fg"
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+ xaxis.major_tick_line_color = "fg"
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+ yaxis.major_tick_line_color = "fg"
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+ xaxis.minor_tick_line_color = "fg"
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+ yaxis.minor_tick_line_color = "fg"
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+
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+ title.text_color = "fg"
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+ xgrid.grid_line_color = "None"
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+ ygrid.grid_line_color = "None"
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+
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+ [colors.default] # Default theme
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+ bg = '#FFFFFF'
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+ fg = '#000000'
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+ cont_band = '#8c564b'
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+ line_band = '#b5bd61'
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+ color_cycle = ['#279e68', '#d62728', '#aa40fc', '#8c564b', '#e377c2', '#7f7f7f',
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+ '#b5bd61', '#17becf', '#1f77b4', '#ff7f0e']
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+ match_line = '#b5bd61'
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+ peak = '#aa40fc'
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+ trough = '#7f7f7f'
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+ profile = '#1f77b4'
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+ cont = '#ff7f0e'
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+ error = '#FF0000'
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+ mask_map = 'viridis'
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+ comps_map = 'Dark2'
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+ mask_marker = '#FF0000'
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+ inspection_positive = '#FFFFFF'
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+ inspection_negative = '#ff796c' # 'xkcd:salmon'
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+ fade_fg = "#FFE5B4"
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+
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+ [colors.dark] # Dark theme
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+ bg = "#2B2B2B"
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+ fg = "#CCCCCC"
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+ cont_band = '#e7298a'
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+ line_band = '#8fff9f'
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+ color_cycle = ['#66c2a5', '#fc8d62', '#e68ac3', '#a6d854', '#ffd92f', '#e5c494',
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+ '#8dcbe2', '#e7298a', '#332288', '#88ccee']
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+ match_line = '#8fff9f'
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+ peak = '#aa40fc'
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+ trough = '#7f7f7f'
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+ profile = '#ddcc77'
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+ cont = "#CCCCCC"
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+ error = '#FF0000'
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+ mask_map = 'viridis'
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+ comps_map = 'PuRd'
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+ mask_marker = '#FF0000'
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+ inspection_positive = "#2B2B2B"
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+ inspection_negative = '#840000'
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+ fade_fg = "#73879B"
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lime-stable
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- Version: 2.0.dev1
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+ Version: 2.0.dev2
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  Summary: Line measuring algorithm for astronomical spectra
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  Author-email: Vital Fernández <vgf@umich.edu>
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  License-Expression: GPL-3.0-or-later
@@ -23,6 +23,7 @@ src/lime/plotting/bokeh_plots.py
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  src/lime/plotting/format.py
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  src/lime/plotting/plots.py
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  src/lime/plotting/plots_interactive.py
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+ src/lime/plotting/theme_lime.toml
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  src/lime/plotting/utils.py
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  src/lime/resources/__init__.py
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  src/lime/resources/lines_database_formatting.py
File without changes