liger-kernel-nightly 0.5.6.dev20250402215200__tar.gz → 0.5.6.dev20250403190551__tar.gz

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: liger_kernel_nightly
-Version: 0.5.6.dev20250402215200
+Version: 0.5.6.dev20250403190551
 Summary: Efficient Triton kernels for LLM Training
 License: BSD 2-CLAUSE LICENSE
         Copyright 2024 LinkedIn Corporation 
@@ -311,6 +311,8 @@ loss.backward()
 | Mixtral     | `liger_kernel.transformers.apply_liger_kernel_to_mixtral`  | RoPE, RMSNorm, SwiGLU, CrossEntropyLoss, FusedLinearCrossEntropy        |
 | Gemma1      | `liger_kernel.transformers.apply_liger_kernel_to_gemma`    | RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
 | Gemma2      | `liger_kernel.transformers.apply_liger_kernel_to_gemma2`   | RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
+| Gemma3 (Text)      | `liger_kernel.transformers.apply_liger_kernel_to_gemma3_text`   | RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
+| Gemma3 (Multimodal)      | `liger_kernel.transformers.apply_liger_kernel_to_gemma3`   | LayerNorm, RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
 | Paligemma, Paligemma2, & Paligemma2 Mix      | `liger_kernel.transformers.apply_liger_kernel_to_paligemma`   | LayerNorm, RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
 | Qwen2, Qwen2.5, & QwQ      | `liger_kernel.transformers.apply_liger_kernel_to_qwen2`    | RoPE, RMSNorm, SwiGLU, CrossEntropyLoss, FusedLinearCrossEntropy        |
 | Qwen2-VL, & QVQ       | `liger_kernel.transformers.apply_liger_kernel_to_qwen2_vl`    | RMSNorm, LayerNorm, SwiGLU, CrossEntropyLoss, FusedLinearCrossEntropy        |

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/README.md

@@ -263,6 +263,8 @@ loss.backward()
 | Mixtral     | `liger_kernel.transformers.apply_liger_kernel_to_mixtral`  | RoPE, RMSNorm, SwiGLU, CrossEntropyLoss, FusedLinearCrossEntropy        |
 | Gemma1      | `liger_kernel.transformers.apply_liger_kernel_to_gemma`    | RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
 | Gemma2      | `liger_kernel.transformers.apply_liger_kernel_to_gemma2`   | RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
+| Gemma3 (Text)      | `liger_kernel.transformers.apply_liger_kernel_to_gemma3_text`   | RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
+| Gemma3 (Multimodal)      | `liger_kernel.transformers.apply_liger_kernel_to_gemma3`   | LayerNorm, RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
 | Paligemma, Paligemma2, & Paligemma2 Mix      | `liger_kernel.transformers.apply_liger_kernel_to_paligemma`   | LayerNorm, RoPE, RMSNorm, GeGLU, CrossEntropyLoss, FusedLinearCrossEntropy         |
 | Qwen2, Qwen2.5, & QwQ      | `liger_kernel.transformers.apply_liger_kernel_to_qwen2`    | RoPE, RMSNorm, SwiGLU, CrossEntropyLoss, FusedLinearCrossEntropy        |
 | Qwen2-VL, & QVQ       | `liger_kernel.transformers.apply_liger_kernel_to_qwen2_vl`    | RMSNorm, LayerNorm, SwiGLU, CrossEntropyLoss, FusedLinearCrossEntropy        |

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "liger_kernel_nightly"
-version = "0.5.6.dev20250402215200"
+version = "0.5.6.dev20250403190551"
 description = "Efficient Triton kernels for LLM Training"
 urls = { "Homepage" = "https://github.com/linkedin/Liger-Kernel" }
 readme = { file = "README.md", content-type = "text/markdown" }

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/src/liger_kernel/transformers/__init__.py

@@ -10,6 +10,8 @@ from liger_kernel.transformers.monkey_patch import _apply_liger_kernel  # noqa:
 from liger_kernel.transformers.monkey_patch import _apply_liger_kernel_to_instance  # noqa: F401
 from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_gemma  # noqa: F401
 from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_gemma2  # noqa: F401
+from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_gemma3  # noqa: F401
+from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_gemma3_text  # noqa: F401
 from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_granite  # noqa: F401
 from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_llama  # noqa: F401
 from liger_kernel.transformers.monkey_patch import apply_liger_kernel_to_llava  # noqa: F401

liger_kernel_nightly-0.5.6.dev20250403190551/src/liger_kernel/transformers/gema3_rms.py

@@ -0,0 +1,8 @@
+from .rms_norm import LigerRMSNorm
+
+
+class LigerRMSNormForGemma3(LigerRMSNorm):
+    """Gemma3RMSNorm has a dim argument not hidden_size used in q_norm and k_norm."""
+
+    def __init__(self, dim, eps=0.000001, offset=1.0, casting_mode="gemma", init_fn="zeros", in_place=False):
+        super().__init__(dim, eps, offset, casting_mode, init_fn, in_place)

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/src/liger_kernel/transformers/model/gemma.py

@@ -12,6 +12,7 @@ from transformers.models.gemma.modeling_gemma import _CONFIG_FOR_DOC
 from transformers.models.gemma.modeling_gemma import GEMMA_INPUTS_DOCSTRING
 from transformers.utils import add_start_docstrings_to_model_forward
 from transformers.utils import replace_return_docstrings
+from transformers.utils.deprecation import deprecate_kwarg
 
 from liger_kernel.transformers.fused_linear_cross_entropy import LigerFusedLinearCrossEntropyLoss
 from liger_kernel.transformers.model.loss_utils import LigerForCausalLMLoss
@@ -127,6 +128,7 @@ def lce_forward_deprecated(
     )
 
 
+@deprecate_kwarg("num_logits_to_keep", version="4.50", new_name="logits_to_keep")
 @add_start_docstrings_to_model_forward(GEMMA_INPUTS_DOCSTRING)
 @replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
 def lce_forward(
@@ -142,7 +144,7 @@ def lce_forward(
     output_hidden_states: Optional[bool] = None,
     return_dict: Optional[bool] = None,
     cache_position: Optional[torch.LongTensor] = None,
-    num_logits_to_keep: int = 0,
+    logits_to_keep: Union[int, torch.Tensor] = 0,
     **loss_kwargs,
 ) -> Union[Tuple, CausalLMOutputWithPast]:
     r"""
@@ -152,10 +154,12 @@ def lce_forward(
             config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
             (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
 
-        num_logits_to_keep (`int`, *optional*):
-            Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
+        logits_to_keep (`int` or `torch.Tensor`, *optional*):
+            If an `int`, compute logits for the last `logits_to_keep` tokens. If `0`, calculate logits for all
             `input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
             token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
+            If a `torch.Tensor`, must be 1D corresponding to the indices to keep in the sequence length dimension.
+            This is useful when using packed tensor format (single dimension for batch and sequence length).
 
     Returns:
 
@@ -209,7 +213,8 @@ def lce_forward(
             **loss_kwargs,
         )
     else:  # if in inference mode materialize logits
-        logits = self.lm_head(hidden_states[:, -num_logits_to_keep:, :])
+        slice_indices = slice(-logits_to_keep, None) if isinstance(logits_to_keep, int) else logits_to_keep
+        logits = self.lm_head(hidden_states[:, slice_indices, :])
         if labels is not None:
             loss = self.loss_function(
                 logits=logits,

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/src/liger_kernel/transformers/model/gemma2.py

@@ -13,6 +13,7 @@ from transformers.models.gemma2.modeling_gemma2 import _CONFIG_FOR_DOC
 from transformers.models.gemma2.modeling_gemma2 import GEMMA2_INPUTS_DOCSTRING
 from transformers.utils import add_start_docstrings_to_model_forward
 from transformers.utils import replace_return_docstrings
+from transformers.utils.deprecation import deprecate_kwarg
 
 from liger_kernel.transformers.fused_linear_cross_entropy import LigerFusedLinearCrossEntropyLoss
 from liger_kernel.transformers.model.loss_utils import LigerForCausalLMLoss
@@ -134,6 +135,7 @@ def lce_forward_deprecated(
     )
 
 
+@deprecate_kwarg("num_logits_to_keep", version="4.50", new_name="logits_to_keep")
 @add_start_docstrings_to_model_forward(GEMMA2_INPUTS_DOCSTRING)
 @replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
 def lce_forward(
@@ -149,7 +151,7 @@ def lce_forward(
     output_hidden_states: Optional[bool] = None,
     return_dict: Optional[bool] = None,
     cache_position: Optional[torch.LongTensor] = None,
-    num_logits_to_keep: int = 0,
+    logits_to_keep: Union[int, torch.Tensor] = 0,
     **loss_kwargs,
 ) -> Union[Tuple, CausalLMOutputWithPast]:
     r"""
@@ -159,10 +161,12 @@ def lce_forward(
             config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
             (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
 
-        num_logits_to_keep (`int`, *optional*):
-            Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
+        logits_to_keep (`int` or `torch.Tensor`, *optional*):
+            If an `int`, compute logits for the last `logits_to_keep` tokens. If `0`, calculate logits for all
             `input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
             token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
+            If a `torch.Tensor`, must be 1D corresponding to the indices to keep in the sequence length dimension.
+            This is useful when using packed tensor format (single dimension for batch and sequence length).
 
     Returns:
 
@@ -223,7 +227,8 @@ def lce_forward(
         )
 
     else:  # if in inference mode materialize logits
-        logits = self.lm_head(hidden_states[:, -num_logits_to_keep:, :])
+        slice_indices = slice(-logits_to_keep, None) if isinstance(logits_to_keep, int) else logits_to_keep
+        logits = self.lm_head(hidden_states[:, slice_indices, :])
         if self.config.final_logit_softcapping is not None:
             logits = logits / self.config.final_logit_softcapping
             logits = torch.tanh(logits)

liger_kernel_nightly-0.5.6.dev20250403190551/src/liger_kernel/transformers/model/gemma3.py

@@ -0,0 +1,335 @@
+from typing import List
+from typing import Optional
+from typing import Tuple
+from typing import Union
+
+import torch
+import torch.nn as nn
+
+from transformers.cache_utils import Cache
+from transformers.cache_utils import HybridCache
+from transformers.modeling_outputs import CausalLMOutputWithPast
+from transformers.models.gemma3.modeling_gemma3 import _CONFIG_FOR_DOC
+from transformers.models.gemma3.modeling_gemma3 import GEMMA3_INPUTS_DOCSTRING
+from transformers.models.gemma3.modeling_gemma3 import Gemma3CausalLMOutputWithPast
+from transformers.utils import add_start_docstrings_to_model_forward
+from transformers.utils import is_torchdynamo_compiling
+from transformers.utils import logging
+from transformers.utils import replace_return_docstrings
+from transformers.utils.deprecation import deprecate_kwarg
+
+from liger_kernel.transformers.fused_linear_cross_entropy import LigerFusedLinearCrossEntropyLoss
+from liger_kernel.transformers.model.loss_utils import LigerForCausalLMLoss
+
+logger = logging.get_logger(__name__)
+
+
+@deprecate_kwarg("num_logits_to_keep", version="4.50", new_name="logits_to_keep")
+@add_start_docstrings_to_model_forward(GEMMA3_INPUTS_DOCSTRING)
+@replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
+def causal_forward(
+    self,
+    input_ids: torch.LongTensor = None,
+    attention_mask: Optional[torch.Tensor] = None,
+    position_ids: Optional[torch.LongTensor] = None,
+    past_key_values: Optional[HybridCache] = None,
+    inputs_embeds: Optional[torch.FloatTensor] = None,
+    labels: Optional[torch.LongTensor] = None,
+    use_cache: Optional[bool] = None,
+    output_attentions: Optional[bool] = None,
+    output_hidden_states: Optional[bool] = None,
+    return_dict: Optional[bool] = None,
+    cache_position: Optional[torch.LongTensor] = None,
+    logits_to_keep: Union[int, torch.Tensor] = 0,
+    **loss_kwargs,
+) -> Union[Tuple, CausalLMOutputWithPast]:
+    r"""
+        labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
+            Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
+            config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
+            (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
+
+        logits_to_keep (`int` or `torch.Tensor`, *optional*):
+            If an `int`, compute logits for the last `logits_to_keep` tokens. If `0`, calculate logits for all
+            `input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
+            token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
+            If a `torch.Tensor`, must be 1D corresponding to the indices to keep in the sequence length dimension.
+            This is useful when using packed tensor format (single dimension for batch and sequence length).
+
+    Returns:
+
+    Example:
+
+    ```python
+    >>> from transformers import AutoTokenizer, Gemma3ForCausalLM
+
+    >>> model = Gemma3ForCausalLM.from_pretrained("google/gemma-2-9b")
+    >>> tokenizer = AutoTokenizer.from_pretrained("google/gemma-2-9b")
+
+    >>> prompt = "What is your favorite condiment?"
+    >>> inputs = tokenizer(prompt, return_tensors="pt")
+
+    >>> # Generate
+    >>> generate_ids = model.generate(inputs.input_ids, max_length=30)
+    >>> tokenizer.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
+    "What is your favorite condiment?"
+    ```"""
+
+    if self.training and self.config._attn_implementation != "eager":
+        logger.warning_once(
+            "It is strongly recommended to train Gemma3 models with the `eager` attention implementation "
+            f"instead of `{self.config._attn_implementation}`. Use `eager` with `AutoModelForCausalLM.from_pretrained('<path-to-checkpoint>', attn_implementation='eager')`."
+        )
+    output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
+    output_hidden_states = (
+        output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
+    )
+    return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+    # decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
+    outputs = self.model(
+        input_ids=input_ids,
+        attention_mask=attention_mask,
+        position_ids=position_ids,
+        past_key_values=past_key_values,
+        inputs_embeds=inputs_embeds,
+        use_cache=use_cache,
+        output_attentions=output_attentions,
+        output_hidden_states=output_hidden_states,
+        return_dict=return_dict,
+        cache_position=cache_position,
+        **loss_kwargs,
+    )
+
+    hidden_states = outputs[0]
+    # Only compute necessary logits, and do not upcast them to float if we are not computing the loss
+    slice_indices = slice(-logits_to_keep, None) if isinstance(logits_to_keep, int) else logits_to_keep
+    kept_hidden_states = hidden_states[:, slice_indices, :]
+    loss = None
+    logits = None
+    if self.training and (labels is not None):
+        loss = LigerForCausalLMLoss(
+            hidden_states=kept_hidden_states,
+            lm_head_weight=self.lm_head.weight,
+            labels=labels,
+            hidden_size=self.config.hidden_size,
+            softcap=self.config.final_logit_softcapping,
+            **loss_kwargs,
+        )
+
+    else:
+        logits = self.lm_head(kept_hidden_states)
+        if self.config.final_logit_softcapping is not None:
+            logits = logits / self.config.final_logit_softcapping
+            logits = torch.tanh(logits)
+            logits = logits * self.config.final_logit_softcapping
+        if labels is not None:
+            loss = self.loss_function(logits, labels, self.vocab_size, **loss_kwargs)
+
+    if not return_dict:
+        output = (logits,) + outputs[1:]
+        return (loss,) + output if loss is not None else output
+
+    return CausalLMOutputWithPast(
+        loss=loss,
+        logits=logits,
+        past_key_values=outputs.past_key_values,
+        hidden_states=outputs.hidden_states,
+        attentions=outputs.attentions,
+    )
+
+
+@deprecate_kwarg("num_logits_to_keep", version="4.50", new_name="logits_to_keep")
+@add_start_docstrings_to_model_forward(GEMMA3_INPUTS_DOCSTRING)
+@replace_return_docstrings(output_type=Gemma3CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
+def multimodal_forward(
+    self,
+    input_ids: torch.LongTensor = None,
+    pixel_values: torch.FloatTensor = None,
+    attention_mask: Optional[torch.Tensor] = None,
+    position_ids: Optional[torch.LongTensor] = None,
+    past_key_values: Optional[Union[List[torch.FloatTensor], Cache]] = None,
+    token_type_ids: Optional[torch.LongTensor] = None,
+    cache_position: Optional[torch.LongTensor] = None,
+    inputs_embeds: Optional[torch.FloatTensor] = None,
+    labels: Optional[torch.LongTensor] = None,
+    use_cache: Optional[bool] = None,
+    output_attentions: Optional[bool] = None,
+    output_hidden_states: Optional[bool] = None,
+    return_dict: Optional[bool] = None,
+    logits_to_keep: Union[int, torch.Tensor] = 0,
+    **lm_kwargs,
+) -> Union[Tuple, Gemma3CausalLMOutputWithPast]:
+    r"""
+        labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
+            Labels for computing the masked language modeling loss. Indices should either be in `[0, ...,
+            config.text_config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
+            (masked), the loss is only computed for the tokens with labels in `[0, ..., config.text_config.vocab_size]`.
+
+        logits_to_keep (`int` or `torch.Tensor`, *optional*):
+            If an `int`, compute logits for the last `logits_to_keep` tokens. If `0`, calculate logits for all
+            `input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
+            token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
+            If a `torch.Tensor`, must be 1D corresponding to the indices to keep in the sequence length dimension.
+            This is useful when using packed tensor format (single dimension for batch and sequence length).
+
+    Returns:
+
+    Example:
+
+    ```python
+    >>> from PIL import Image
+    >>> import requests
+    >>> from transformers import AutoProcessor, Gemma3ForConditionalGeneration
+
+    >>> model = Gemma3ForConditionalGeneration.from_pretrained("google/Gemma3-test-224px-hf")
+    >>> processor = AutoProcessor.from_pretrained("google/Gemma3-test-224px-hf")
+
+    >>> prompt = "answer en Where is the cow standing?"
+    >>> url = "https://huggingface.co/gv-hf/Gemma3-test-224px-hf/resolve/main/cow_beach_1.png"
+    >>> image = Image.open(requests.get(url, stream=True).raw)
+
+    >>> inputs = processor(images=image, text=prompt,  return_tensors="pt")
+
+    >>> # Generate
+    >>> generate_ids = model.generate(**inputs, max_length=30)
+    >>> processor.batch_decode(generate_ids, skip_special_tokens=True, clean_up_tokenization_spaces=False)[0]
+    "answer en Where is the cow standing?\nbeach"
+    ```"""
+
+    if (input_ids is None) ^ (inputs_embeds is not None):
+        raise ValueError("You must specify exactly one of input_ids or inputs_embeds")
+
+    output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
+    output_hidden_states = (
+        output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
+    )
+    return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+
+    is_training = token_type_ids is not None and labels is not None
+
+    # Replace image id woth PAD if the image token if OOV, to avoid index-errors
+    if input_ids is not None and self.config.image_token_index >= self.vocab_size:
+        special_image_mask = input_ids == self.config.image_token_index
+        llm_input_ids = input_ids.clone()
+        llm_input_ids[special_image_mask] = 0
+    else:
+        llm_input_ids = input_ids
+
+    if inputs_embeds is None:
+        inputs_embeds = self.get_input_embeddings()(llm_input_ids)
+
+    if cache_position is None:
+        past_seen_tokens = past_key_values.get_seq_length() if past_key_values is not None else 0
+        cache_position = torch.arange(
+            past_seen_tokens, past_seen_tokens + inputs_embeds.shape[1], device=inputs_embeds.device
+        )
+
+    if position_ids is None:
+        position_ids = cache_position.unsqueeze(0) + 1  # Gemma3 positions are 1-indexed
+
+    # Merge text and images
+    if pixel_values is not None:
+        image_features = self.get_image_features(pixel_values)
+
+        if input_ids is None:
+            special_image_mask = inputs_embeds == self.get_input_embeddings()(
+                torch.tensor(self.config.image_token_index, dtype=torch.long, device=inputs_embeds.device)
+            )
+        else:
+            special_image_mask = (input_ids == self.config.image_token_index).unsqueeze(-1)
+            special_image_mask = special_image_mask.expand_as(inputs_embeds).to(inputs_embeds.device)
+
+        if not is_torchdynamo_compiling() and inputs_embeds[special_image_mask].numel() != image_features.numel():
+            image_tokens_in_text = (special_image_mask).sum(dim=1).sum(dim=0)[0]
+            raise ValueError(
+                f"Number of images does not match number of special image tokens in the input text. "
+                f"Got {image_tokens_in_text} image tokens in the text but {image_features.shape[0] * image_features.shape[1]} "
+                "tokens from image embeddings."
+            )
+        image_features = image_features.to(inputs_embeds.device, inputs_embeds.dtype)
+        inputs_embeds = inputs_embeds.masked_scatter(special_image_mask, image_features)
+
+    # mask out pad-token-ids in labels for BC
+    if labels is not None and self.pad_token_id in labels:
+        logger.warning_once(
+            "`labels` contains `pad_token_id` which will be masked with `config.ignore_index`. "
+            "You have to mask out `pad_token_id` when preparing `labels`, this behavior will be removed in v.4.46.",
+        )
+        labels = torch.where(input_ids == self.pad_token_id, self.config.ignore_index, labels)
+
+    causal_mask = self._update_causal_mask(
+        attention_mask, token_type_ids, past_key_values, cache_position, inputs_embeds, is_training
+    )
+    outputs = self.language_model.model(
+        attention_mask=causal_mask,
+        position_ids=position_ids,
+        past_key_values=past_key_values,
+        inputs_embeds=inputs_embeds,
+        use_cache=use_cache,
+        output_attentions=output_attentions,
+        output_hidden_states=output_hidden_states,
+        return_dict=return_dict,
+        cache_position=cache_position,
+        logits_to_keep=logits_to_keep,
+        **lm_kwargs,
+    )
+
+    hidden_states = outputs[0]
+    loss = None
+    logits = None
+
+    if self.training and (labels is not None):
+        shift_hidden_states = hidden_states[..., :-1, :]
+        shift_labels = labels[..., 1:]
+
+        hidden_device = shift_hidden_states.device
+        if attention_mask is not None:
+            # we use the input attention mask to shift the hidden_states and labels, because it is 2D.
+            # we also crop attn mask in case it is longer, which happens in PrefixTuning with peft
+            shift_attention_mask = attention_mask[:, -shift_hidden_states.shape[1] :].to(hidden_device)
+            shift_hidden_states = shift_hidden_states[shift_attention_mask.to(hidden_device) != 0].contiguous()
+            shift_labels = shift_labels[shift_attention_mask.to(shift_labels.device) != 0].contiguous()
+        else:
+            shift_hidden_states = shift_hidden_states.contiguous()
+            shift_labels = shift_labels.contiguous()
+
+        # Flatten hidden state
+        shift_hidden_states = shift_hidden_states.view(-1, self.config.text_config.hidden_size)
+        shift_labels = shift_labels.view(-1).to(hidden_device)
+
+        lce = LigerFusedLinearCrossEntropyLoss()
+        loss = lce(self.language_model.lm_head.weight, shift_hidden_states, shift_labels)
+    else:
+        logits = self.language_model.lm_head(hidden_states)
+        if labels is not None:
+            # Upcast to float if we need to compute the loss to avoid potential precision issues
+            logits = logits.float()
+            shift_logits = logits[..., :-1, :]
+            shift_labels = labels[..., 1:]
+            if attention_mask is not None:
+                # we use the input attention mask to shift the logits and labels, because it is 2D.
+                # we also crop attn mask in case it is longer, which happens in PrefixTuning with peft
+                shift_attention_mask = attention_mask[:, -shift_logits.shape[1] :].to(logits.device)
+                shift_logits = shift_logits[shift_attention_mask.to(logits.device) != 0].contiguous()
+                shift_labels = shift_labels[shift_attention_mask.to(shift_labels.device) != 0].contiguous()
+            else:
+                shift_logits = shift_logits.contiguous()
+                shift_labels = shift_labels.contiguous()
+            # Flatten the tokens
+            loss_fct = nn.CrossEntropyLoss()
+
+            flat_logits = shift_logits.view(-1, self.config.text_config.vocab_size)
+            flat_labels = shift_labels.view(-1).to(shift_logits.device)
+            loss = loss_fct(flat_logits, flat_labels)
+    if not return_dict:
+        output = (logits,) + outputs[1:]
+        return (loss,) + output if loss is not None else output
+
+    return Gemma3CausalLMOutputWithPast(
+        loss=loss,
+        logits=logits,
+        past_key_values=outputs.past_key_values,
+        hidden_states=outputs.hidden_states,
+        attentions=outputs.attentions,
+        image_hidden_states=image_features if pixel_values is not None else None,
+    )

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/src/liger_kernel/transformers/model/llama.py

@@ -13,6 +13,7 @@ from transformers.models.llama.modeling_llama import _CONFIG_FOR_DOC
 from transformers.models.llama.modeling_llama import LLAMA_INPUTS_DOCSTRING
 from transformers.utils import add_start_docstrings_to_model_forward
 from transformers.utils import replace_return_docstrings
+from transformers.utils.deprecation import deprecate_kwarg
 
 from liger_kernel.transformers.fused_linear_cross_entropy import LigerFusedLinearCrossEntropyLoss
 from liger_kernel.transformers.model.loss_utils import LigerForCausalLMLoss
@@ -135,6 +136,7 @@ def lce_forward_deprecated(
     )
 
 
+@deprecate_kwarg("num_logits_to_keep", version="4.50", new_name="logits_to_keep")
 @add_start_docstrings_to_model_forward(LLAMA_INPUTS_DOCSTRING)
 @replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
 def lce_forward(
@@ -150,7 +152,7 @@ def lce_forward(
     output_hidden_states: Optional[bool] = None,
     return_dict: Optional[bool] = None,
     cache_position: Optional[torch.LongTensor] = None,
-    num_logits_to_keep: int = 0,
+    logits_to_keep: Union[int, torch.Tensor] = 0,
     **loss_kwargs,
 ) -> Union[Tuple, CausalLMOutputWithPast]:
     r"""
@@ -160,10 +162,12 @@ def lce_forward(
             config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
             (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
 
-        num_logits_to_keep (`int`, *optional*):
-            Calculate logits for the last `num_logits_to_keep` tokens. If `0`, calculate logits for all
+        logits_to_keep (`int` or `torch.Tensor`, *optional*):
+            If an `int`, compute logits for the last `logits_to_keep` tokens. If `0`, calculate logits for all
             `input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
             token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
+            If a `torch.Tensor`, must be 1D corresponding to the indices to keep in the sequence length dimension.
+            This is useful when using packed tensor format (single dimension for batch and sequence length).
 
     Returns:
 
@@ -222,7 +226,8 @@ def lce_forward(
         )
 
     else:  # if in inference mode materialize logits
-        logits = self.lm_head(hidden_states[:, -num_logits_to_keep:, :])
+        slice_indices = slice(-logits_to_keep, None) if isinstance(logits_to_keep, int) else logits_to_keep
+        logits = self.lm_head(hidden_states[:, slice_indices, :])
         if labels is not None:
             loss = self.loss_function(
                 logits=logits,

{liger_kernel_nightly-0.5.6.dev20250402215200 → liger_kernel_nightly-0.5.6.dev20250403190551}/src/liger_kernel/transformers/model/mistral.py

@@ -5,17 +5,18 @@ from typing import Union
 
 import torch
 
-from torch.nn import CrossEntropyLoss
 from transformers.cache_utils import Cache
 from transformers.modeling_outputs import CausalLMOutputWithPast
 from transformers.models.mistral.modeling_mistral import _CONFIG_FOR_DOC
 from transformers.models.mistral.modeling_mistral import MISTRAL_INPUTS_DOCSTRING
 from transformers.utils import add_start_docstrings_to_model_forward
 from transformers.utils import replace_return_docstrings
+from transformers.utils.deprecation import deprecate_kwarg
 
 from liger_kernel.transformers.model.loss_utils import LigerForCausalLMLoss
 
 
+@deprecate_kwarg("num_logits_to_keep", version="4.50", new_name="logits_to_keep")
 @add_start_docstrings_to_model_forward(MISTRAL_INPUTS_DOCSTRING)
 @replace_return_docstrings(output_type=CausalLMOutputWithPast, config_class=_CONFIG_FOR_DOC)
 def lce_forward(
@@ -31,6 +32,7 @@ def lce_forward(
     output_hidden_states: Optional[bool] = None,
     return_dict: Optional[bool] = None,
     cache_position: Optional[torch.LongTensor] = None,
+    logits_to_keep: Union[int, torch.Tensor] = 0,
     **loss_kwargs,
 ) -> Union[Tuple, CausalLMOutputWithPast]:
     r"""
@@ -43,6 +45,12 @@ def lce_forward(
             config.vocab_size]` or -100 (see `input_ids` docstring). Tokens with indices set to `-100` are ignored
             (masked), the loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`.
 
+        logits_to_keep (`int` or `torch.Tensor`, *optional*):
+            If an `int`, compute logits for the last `logits_to_keep` tokens. If `0`, calculate logits for all
+            `input_ids` (special case). Only last token logits are needed for generation, and calculating them only for that
+            token can save memory, which becomes pretty significant for long sequences or large vocabulary size.
+            If a `torch.Tensor`, must be 1D corresponding to the indices to keep in the sequence length dimension.
+            This is useful when using packed tensor format (single dimension for batch and sequence length).
     Returns:
 
     Example:
@@ -97,21 +105,17 @@ def lce_forward(
         )
 
     else:
-        logits = self.lm_head(hidden_states)
-        if labels is not None:
-            # Upcast to float if we need to compute the loss to avoid potential precision issues
-            logits = logits.float()
-            # Shift so that tokens < n predict n
-            shift_logits = logits[..., :-1, :].contiguous()
-            shift_labels = labels[..., 1:].contiguous()
-            # Flatten the tokens
-            shift_logits = shift_logits.view(-1, self.config.vocab_size)
-            shift_labels = shift_labels.view(-1)
-            # Ensure tensors are on the same device
-            shift_labels = shift_labels.to(shift_logits.device)
-            loss_fct = CrossEntropyLoss()
-            loss = loss_fct(shift_logits, shift_labels)
+        slice_indices = slice(-logits_to_keep, None) if isinstance(logits_to_keep, int) else logits_to_keep
+        logits = self.lm_head(hidden_states[:, slice_indices, :])
 
+        loss = None
+        if labels is not None:
+            loss = self.loss_function(
+                logits=logits,
+                labels=labels,
+                vocab_size=self.config.vocab_size,
+                **loss_kwargs,
+            )
     if not return_dict:
         output = (logits,) + outputs[1:]
         return (loss,) + output if loss is not None else output