liesel-gam 0.1.0a1__tar.gz → 0.1.1__tar.gz

liesel_gam-0.1.1/.github/workflows/doctest.yml

@@ -0,0 +1,61 @@
+name: doctest
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main, develop]
+  workflow_dispatch: # trigger manually from GitHub UI
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  pytest:
+    runs-on: ubuntu-latest
+    timeout-minutes: 10
+
+    strategy:
+      matrix:
+        python-version: ["3.13"]
+
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+      - name: Install uv and set the python version
+        uses: astral-sh/setup-uv@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+          enable-cache: true
+          cache-dependency-glob: "uv.lock"
+
+
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: 'release'
+          use-public-rspm: true
+
+      - name: Fix R library path
+        run: |
+          echo "LD_LIBRARY_PATH=$(R RHOME)/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
+
+      - name: Install R dependencies
+        run: |
+          Rscript -e "install.packages('arrow')"
+
+      - name: Install Package
+        run: uv sync --locked --group dev
+
+      - name: Debug R environment
+        run: |
+          echo "R_HOME=$(R RHOME)"
+          echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
+          find $(R RHOME) -name methods.so
+          find $(R RHOME) -name libR.so
+
+
+      - name: Run pytest
+        run: uv run pytest --doctest-modules src/liesel_gam

{liesel_gam-0.1.0a1 → liesel_gam-0.1.1}/.github/workflows/pre-commit.yml

@@ -2,11 +2,15 @@ name: pre-commit
 
 on:
   push:
-    branches: [main, develop]
+    branches: [main]
   pull_request:
     branches: [main, develop]
   workflow_dispatch: # trigger manually from GitHub UI
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   pre-commit:
     runs-on: ubuntu-latest

{liesel_gam-0.1.0a1 → liesel_gam-0.1.1}/.github/workflows/pytest-notebooks.yml

@@ -2,9 +2,15 @@ name: notebooks
 
 on:
   push:
+    branches: [main]
+  pull_request:
     branches: [main, develop]
   workflow_dispatch: # trigger manually from GitHub UI
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   pytest:
     runs-on: ubuntu-latest
@@ -13,7 +19,7 @@ jobs:
     strategy:
       matrix:
         python-version: ["3.13"]
-        notebook-dir: ["basic", "composite", "lin", "multivariate", "univariate"]
+        notebook-dir: ["composite", "lin", "multivariate", "univariate"]
 
     steps:
       - name: Check out repository

{liesel_gam-0.1.0a1 → liesel_gam-0.1.1}/.github/workflows/pytest-pull.yml

@@ -5,6 +5,10 @@ on:
     branches: [main, develop]
   workflow_dispatch: # trigger manually from GitHub UI
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   pytest:
     runs-on: ubuntu-latest

{liesel_gam-0.1.0a1 → liesel_gam-0.1.1}/.github/workflows/pytest.yml

@@ -2,9 +2,13 @@ name: pytest
 
 on:
   push:
-    branches: [main, develop]
+    branches: [main]
   workflow_dispatch: # trigger manually from GitHub UI
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   pytest:
     runs-on: ubuntu-latest

{liesel_gam-0.1.0a1 → liesel_gam-0.1.1}/.gitignore

@@ -180,3 +180,10 @@ notebooks/test_ti_smooth.ipynb
 notebooks/test_mrf.R
 img/Präsentation1.pptx
 covtest.sh
+/docs/source/generated
+notebooks/multivariate/test_tx_optim.ipynb
+/doctests
+notebooks/univariate/test_ps_nosmooth.ipynb
+notebooks/univariate/test_ps_smooth_constant_prior.ipynb
+notebooks/univariate/test_ps_vi.ipynb
+notebooks/univariate/test_ps_with_optim.ipynb

liesel_gam-0.1.1/.readthedocs.yaml

@@ -0,0 +1,27 @@
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version, and other tools you might need
+build:
+  os: ubuntu-24.04
+  tools:
+    python: "3.13"
+  jobs:
+    install:
+      - python -m pip install --upgrade pip
+      - python -m pip install . --group dev
+      - python -m pip list
+
+# Build documentation in the "docs/" directory with Sphinx
+sphinx:
+   configuration: docs/source/conf.py
+
+# Optionally, but recommended,
+# declare the Python requirements required to build your documentation
+# See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
+# python:
+#    install:
+#    - requirements: docs/requirements.txt

liesel_gam-0.1.0a1/README.md → liesel_gam-0.1.1/PKG-INFO

@@ -1,9 +1,29 @@
+Metadata-Version: 2.4
+Name: liesel_gam
+Version: 0.1.1
+Summary: Functionality for Generalized Additive Models in Liesel
+Author: Johannes Brachem
+License-File: LICENSE
+Keywords: machine-learning,statistics
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: <3.14,>=3.13
+Requires-Dist: formulaic>=1.2.1
+Requires-Dist: liesel>=0.4.2
+Requires-Dist: plotnine>=0.14.5
+Requires-Dist: smoothcon>=0.0.9
+Description-Content-Type: text/markdown
+
 # Bayesian Generalized Additive Models in Liesel
 
 [![pypi](https://img.shields.io/pypi/v/liesel_gam?color=blue)](https://pypi.org/project/liesel_gam)
+[![readthedocs](https://readthedocs.org/projects/liesel_gam/badge/?version=latest)](https://liesel-gam.readthedocs.io/latest/)
 [![pre-commit](https://github.com/liesel-devs/liesel_gam/actions/workflows/pre-commit.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/pre-commit.yml)
 [![notebooks](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest-notebooks.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/tree/main/notebooks)
 [![pytest](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest.yml)
+[![doctest](https://github.com/liesel-devs/liesel_gam/actions/workflows/doctest.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/doctest.yml)
 [![pytest-cov](https://raw.githubusercontent.com/liesel-devs/liesel_gam/refs/heads/main/tests/coverage.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest.yml)
 
 This title is short and catchy, but does not convey the full range of models covered by this library. We could also say:
@@ -78,6 +98,13 @@ You can also install the development version from GitHub via pip:
 pip install git+https://github.com/liesel-devs/liesel_gam.git
 ```
 
+Since liesel-GAM interfaces with R via `ryp` under the hood,
+you also need the R packages `{arrow}` and `{svglite}` to be available on your system:
+
+```bash
+Rscript -e "install.packages(c('arrow', 'svglite'))"
+```
+
 ## Contents
 
 - [Short usage illustration](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#illustrations)
@@ -91,7 +118,7 @@ pip install git+https://github.com/liesel-devs/liesel_gam.git
   - [Compose terms to build new models](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#compose-terms-to-build-new-models)
   - [Use a custom basis function](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#use-a-custom-basis-function)
   - [Use a custom basis matrix directly](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#use-a-custom-basis-matrix-directly)
-  - [Noncentered parameterization](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#noncentered-parameterization)
+  - [Partially standardized parameterization](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#factor_scale-parameterization)
   - [Extract a basis](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#extract-a-basis-directly)
   - [Extract a column from the data frame as a variable](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#extract-a-column-from-the-data-frame-as-a-variable)
 - [Overview of smooth terms available in liesel_gam](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#overview-of-smooth-terms-available-in-liesel_gam)
@@ -436,23 +463,27 @@ new_custom_basis = ... # your (m, p) array, the basis matrix at which you want t
 model.predict(newdata={"x8": new_custom_basis}, predict=["h(x8)"])
 ```
 
-### Noncentered parameterization
+### Partially standardized parameterization
 
 Sometimes sampling from the posterior can be facilitated by sampling from a
-reparameterized model, particularly using a "noncentered" parameterization
-(see [Stan documentation](https://mc-stan.org/docs/2_18/stan-users-guide/reparameterization-section.html)).
+reparameterized model, particularly using a partially standardized parameterization.
 
-Consider the mdoel $x \sim N(0, \sigma^2)$. Noncentered parameterization means that,
+Consider the mdoel $x \sim N(0, \sigma^2)$. factor_scale parameterization means that,
 instead of sampling $x$ and $\sigma^2$ directly, we rewrite it as $x = \sigma * \tilde{x}$,
 where $\tilde{x} \sim N(0, 1)$, and draw samples of $\tilde{x}$ and $\sigma^2$.
 
-For many terms in `liesel_gam` you can enable a noncentered parameterization by
+For many terms in `liesel_gam` you can enable a partially standardized parameterization
+by
 setting a corresponding argument to `True`:
 
 ```python
-loc_pred += tb.ps("x5", k=20, noncentered=True)
+loc_pred += tb.ps("x5", k=20, factor_scale=True)
 ```
 
+When used with diagonalized penalties (the default), setting `factor_scale=True`
+corresponds to a "noncentered parameterization"
+(see [Stan documentation](https://mc-stan.org/docs/2_18/stan-users-guide/reparameterization-section.html))
+
 ### Extract a basis directly
 
 Sometimes you just want a certain basis matrix, and use it to build your own term.

liesel_gam-0.1.0a1/PKG-INFO → liesel_gam-0.1.1/README.md

@@ -1,26 +1,11 @@
-Metadata-Version: 2.4
-Name: liesel_gam
-Version: 0.1.0a1
-Summary: Functionality for Generalized Additive Models in Liesel
-Author: Johannes Brachem
-License-File: LICENSE
-Keywords: machine-learning,statistics
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.13
-Requires-Python: <3.14,>=3.13
-Requires-Dist: formulaic>=1.2.1
-Requires-Dist: liesel>=0.4.2
-Requires-Dist: smoothcon>=0.0.9
-Description-Content-Type: text/markdown
-
 # Bayesian Generalized Additive Models in Liesel
 
 [![pypi](https://img.shields.io/pypi/v/liesel_gam?color=blue)](https://pypi.org/project/liesel_gam)
+[![readthedocs](https://readthedocs.org/projects/liesel_gam/badge/?version=latest)](https://liesel-gam.readthedocs.io/latest/)
 [![pre-commit](https://github.com/liesel-devs/liesel_gam/actions/workflows/pre-commit.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/pre-commit.yml)
 [![notebooks](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest-notebooks.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/tree/main/notebooks)
 [![pytest](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest.yml)
+[![doctest](https://github.com/liesel-devs/liesel_gam/actions/workflows/doctest.yml/badge.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/doctest.yml)
 [![pytest-cov](https://raw.githubusercontent.com/liesel-devs/liesel_gam/refs/heads/main/tests/coverage.svg)](https://github.com/liesel-devs/liesel_gam/actions/workflows/pytest.yml)
 
 This title is short and catchy, but does not convey the full range of models covered by this library. We could also say:
@@ -95,6 +80,13 @@ You can also install the development version from GitHub via pip:
 pip install git+https://github.com/liesel-devs/liesel_gam.git
 ```
 
+Since liesel-GAM interfaces with R via `ryp` under the hood,
+you also need the R packages `{arrow}` and `{svglite}` to be available on your system:
+
+```bash
+Rscript -e "install.packages(c('arrow', 'svglite'))"
+```
+
 ## Contents
 
 - [Short usage illustration](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#illustrations)
@@ -108,7 +100,7 @@ pip install git+https://github.com/liesel-devs/liesel_gam.git
   - [Compose terms to build new models](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#compose-terms-to-build-new-models)
   - [Use a custom basis function](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#use-a-custom-basis-function)
   - [Use a custom basis matrix directly](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#use-a-custom-basis-matrix-directly)
-  - [Noncentered parameterization](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#noncentered-parameterization)
+  - [Partially standardized parameterization](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#factor_scale-parameterization)
   - [Extract a basis](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#extract-a-basis-directly)
   - [Extract a column from the data frame as a variable](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#extract-a-column-from-the-data-frame-as-a-variable)
 - [Overview of smooth terms available in liesel_gam](https://github.com/liesel-devs/liesel_gam?tab=readme-ov-file#overview-of-smooth-terms-available-in-liesel_gam)
@@ -453,23 +445,27 @@ new_custom_basis = ... # your (m, p) array, the basis matrix at which you want t
 model.predict(newdata={"x8": new_custom_basis}, predict=["h(x8)"])
 ```
 
-### Noncentered parameterization
+### Partially standardized parameterization
 
 Sometimes sampling from the posterior can be facilitated by sampling from a
-reparameterized model, particularly using a "noncentered" parameterization
-(see [Stan documentation](https://mc-stan.org/docs/2_18/stan-users-guide/reparameterization-section.html)).
+reparameterized model, particularly using a partially standardized parameterization.
 
-Consider the mdoel $x \sim N(0, \sigma^2)$. Noncentered parameterization means that,
+Consider the mdoel $x \sim N(0, \sigma^2)$. factor_scale parameterization means that,
 instead of sampling $x$ and $\sigma^2$ directly, we rewrite it as $x = \sigma * \tilde{x}$,
 where $\tilde{x} \sim N(0, 1)$, and draw samples of $\tilde{x}$ and $\sigma^2$.
 
-For many terms in `liesel_gam` you can enable a noncentered parameterization by
+For many terms in `liesel_gam` you can enable a partially standardized parameterization
+by
 setting a corresponding argument to `True`:
 
 ```python
-loc_pred += tb.ps("x5", k=20, noncentered=True)
+loc_pred += tb.ps("x5", k=20, factor_scale=True)
 ```
 
+When used with diagonalized penalties (the default), setting `factor_scale=True`
+corresponds to a "noncentered parameterization"
+(see [Stan documentation](https://mc-stan.org/docs/2_18/stan-users-guide/reparameterization-section.html))
+
 ### Extract a basis directly
 
 Sometimes you just want a certain basis matrix, and use it to build your own term.

liesel_gam-0.1.1/docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = source
+BUILDDIR      = build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

liesel_gam-0.1.1/docs/make.bat

@@ -0,0 +1,35 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=source
+set BUILDDIR=build
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.https://www.sphinx-doc.org/
+	exit /b 1
+)
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O%
+
+:end
+popd

liesel_gam-0.1.1/docs/requirements.txt

@@ -0,0 +1,156 @@
+absl-py==2.2.2
+accessible-pygments==0.0.5
+alabaster==1.0.0
+appnope==0.1.4
+arviz==0.21.0
+asttokens==3.0.0
+attrs==25.3.0
+babel==2.17.0
+beautifulsoup4==4.13.4
+black==25.1.0
+blackjax==1.2.5
+build==1.2.2.post1
+certifi==2025.4.26
+cfgv==3.4.0
+charset-normalizer==3.4.2
+chex==0.1.89
+click==8.2.0
+cloudpickle==3.1.1
+comm==0.2.2
+contourpy==1.3.2
+coverage==7.8.0
+cycler==0.12.1
+debugpy==1.8.14
+decorator==5.2.1
+dill==0.4.0
+distlib==0.3.9
+dm-tree==0.1.9
+docutils==0.21.2
+etils==1.12.2
+executing==2.2.0
+fastjsonschema==2.21.1
+fastprogress==1.0.3
+filelock==3.18.0
+flake8==7.2.0
+fonttools==4.58.0
+gast==0.6.0
+h5netcdf==1.6.1
+h5py==3.13.0
+identify==2.6.10
+idna==3.10
+imagesize==1.4.1
+importlib_metadata==8.7.0
+iniconfig==2.1.0
+ipykernel==6.29.5
+ipython==9.2.0
+ipython_pygments_lexers==1.1.1
+isort==6.0.1
+jax==0.6.0
+jaxlib==0.6.0
+jaxopt==0.8.5
+jedi==0.19.2
+Jinja2==3.1.6
+joblib==1.5.0
+jsonschema==4.23.0
+jsonschema-specifications==2025.4.1
+jupyter-cache==1.0.1
+jupyter_client==8.6.3
+jupyter_core==5.7.2
+kiwisolver==1.4.8
+git+https://github.com/liesel-devs/liesel.git#egg=liesel
+git+https://github.com/liesel-devs/liesel_gam.git#egg=liesel_gam
+markdown-it-py==3.0.0
+MarkupSafe==3.0.2
+matplotlib==3.10.3
+matplotlib-inline==0.1.7
+mccabe==0.7.0
+mdit-py-plugins==0.4.2
+mdurl==0.1.2
+mizani==0.13.5
+ml_dtypes==0.5.1
+mypy==1.15.0
+mypy_extensions==1.1.0
+myst-nb==1.2.0
+myst-parser==4.0.1
+nbclient==0.10.2
+nbformat==5.10.4
+nest-asyncio==1.6.0
+networkx==3.4.2
+nodeenv==1.9.1
+numpy==2.2.1
+opt_einsum==3.4.0
+optax==0.2.4
+packaging==25.0
+pandas==2.2.3
+parso==0.8.4
+pathspec==0.12.1
+patsy==1.0.1
+pdoc==15.0.3
+pexpect==4.9.0
+pillow==11.2.1
+platformdirs==4.3.8
+plotnine==0.14.5
+pluggy==1.6.0
+pre_commit==4.2.0
+prompt_toolkit==3.0.51
+psutil==7.0.0
+ptyprocess==0.7.0
+pure_eval==0.2.3
+pycodestyle==2.13.0
+pydata-sphinx-theme==0.15.4
+pydot==4.0.0
+pyflakes==3.3.2
+Pygments==2.19.1
+pyparsing==3.2.3
+pyproject_hooks==1.2.0
+pytest==8.3.5
+pytest-cov==6.1.1
+python-dateutil==2.9.0.post0
+python-dotenv==1.0.1
+pytz==2025.2
+pyupgrade==3.19.1
+PyYAML==6.0.2
+pyzmq==26.4.0
+referencing==0.36.2
+requests==2.32.3
+roman-numerals-py==3.1.0
+rpds-py==0.25.0
+ruff==0.11.8
+scikit-learn==1.6.1
+scipy==1.14.1
+seaborn==0.13.2
+setuptools==80.7.1
+six==1.17.0
+snowballstemmer==3.0.1
+soupsieve==2.7
+Sphinx==8.2.3
+sphinx-autodoc-typehints==3.2.0
+sphinx-book-theme==1.1.4
+sphinx-copybutton==0.5.2
+sphinx-remove-toctrees==1.0.0.post1
+sphinxcontrib-applehelp==2.0.0
+sphinxcontrib-devhelp==2.0.0
+sphinxcontrib-htmlhelp==2.1.0
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==2.0.0
+sphinxcontrib-serializinghtml==2.0.0
+SQLAlchemy==2.0.41
+stack-data==0.6.3
+statsmodels==0.14.4
+tabulate==0.9.0
+tensorflow-probability==0.25.0
+threadpoolctl==3.6.0
+tokenize_rt==6.1.0
+toolz==1.0.0
+tornado==6.5
+tqdm==4.67.1
+traitlets==5.14.3
+typing_extensions==4.13.2
+tzdata==2025.2
+urllib3==2.4.0
+virtualenv==20.31.2
+wcwidth==0.2.13
+wrapt==1.17.2
+xarray==2025.4.0
+xarray-einstats==0.8.0
+zipp==3.21.0

liesel_gam-0.1.1/docs/source/_static/custom.css

@@ -0,0 +1,39 @@
+#acknowledgements img {
+    height: 4em;
+}
+
+/* uni goettingen */
+#acknowledgements img:first-of-type {
+    margin: 1em 2em 1em 0;
+}
+
+/* dfg */
+#acknowledgements img:nth-of-type(2) {
+    margin: 1em 0 1em 0;
+}
+
+/* override no-wrap for inherited kwargs tables */
+.wy-table-responsive table td, .wy-table-responsive table th {
+    white-space: normal;
+}
+
+p.rubric {
+    border-bottom: 0em;
+}
+
+/* from https://stackoverflow.com/a/62451601 */
+table.dataframe {
+    display: block;
+    max-width: -moz-fit-content;
+    max-width: fit-content;
+    overflow-x: auto;
+}
+
+table.dataframe th, table.dataframe td {
+    border: 1px solid #c9c9c9;
+    padding: 6px 13px;
+}
+
+table.dataframe tr:nth-child(even) {
+    background-color: #fafafa;
+}

liesel_gam-0.1.1/docs/source/_templates/autosummary/attribute.rst

@@ -0,0 +1,6 @@
+{{ class }}.{{ name | escape }}
+{{ underline }}
+
+.. currentmodule:: {{ module }}
+
+.. auto{{ objtype }}:: {{ objname }}

liesel_gam-0.1.1/docs/source/_templates/autosummary/class.rst

@@ -0,0 +1,55 @@
+{{ name | escape | underline }}
+
+.. currentmodule:: {{ module }}
+
+.. autoclass:: {{ objname }}
+   :show-inheritance:
+
+   {% block methods %}
+
+   {% set public_methods = [] %}
+   {% for item in methods %}
+   {% if not (item == "__init__"
+              or item in inherited_members
+              or item == "cross_entropy"
+              or item == "kl_divergence") %}
+   {% set _ = public_methods.append(item) %}
+   {% endif %}
+   {% endfor %}
+
+   {% if public_methods %}
+   .. rubric:: {{ _('Methods') }}
+
+   .. autosummary::
+      :toctree:
+      :nosignatures:
+
+      {% for item in public_methods %}
+      ~{{ name }}.{{ item }}
+      {% endfor %}
+   {% endif %}
+
+   {% endblock %}
+
+   {% block attributes %}
+
+   {% set public_attributes = [] %}
+   {% for item in attributes %}
+   {% if item not in inherited_members %}
+   {% set _ = public_attributes.append(item) %}
+   {% endif %}
+   {% endfor %}
+
+   {% if public_attributes %}
+   .. rubric:: {{ _('Attributes') }}
+
+   .. autosummary::
+      :template: autosummary/attribute.rst
+      :toctree:
+
+      {% for item in public_attributes %}
+      ~{{ name }}.{{ item }}
+      {% endfor %}
+   {% endif %}
+
+   {% endblock %}

liesel_gam-0.1.1/docs/source/_templates/autosummary/function.rst

@@ -0,0 +1,6 @@
+{{ name | escape }}()
+{{ underline }}
+
+.. currentmodule:: {{ module }}
+
+.. auto{{ objtype }}:: {{ objname }}

liesel_gam-0.1.1/docs/source/_templates/autosummary/method.rst

@@ -0,0 +1,6 @@
+{{ class }}.{{ name | escape }}()
+{{ underline }}
+
+.. currentmodule:: {{ module }}
+
+.. auto{{ objtype }}:: {{ objname }}