liesel-gam 0.0.5.dev0__tar.gz → 0.1.0a1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (43) hide show
  1. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.github/workflows/pre-commit.yml +3 -2
  2. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.github/workflows/pypi.yml +1 -1
  3. liesel_gam-0.1.0a1/.github/workflows/pytest-notebooks.yml +56 -0
  4. liesel_gam-0.0.5.dev0/.github/workflows/pytest-notebooks.yml → liesel_gam-0.1.0a1/.github/workflows/pytest-pull.yml +13 -8
  5. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.github/workflows/pytest.yml +10 -5
  6. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.gitignore +4 -0
  7. liesel_gam-0.1.0a1/PKG-INFO +560 -0
  8. liesel_gam-0.1.0a1/README.md +543 -0
  9. liesel_gam-0.1.0a1/img/plots.png +0 -0
  10. liesel_gam-0.1.0a1/img/plots2.png +0 -0
  11. liesel_gam-0.1.0a1/img/plots3.png +0 -0
  12. liesel_gam-0.1.0a1/img/s1(x).png +0 -0
  13. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/pyproject.toml +9 -2
  14. liesel_gam-0.1.0a1/src/liesel_gam/__about__.py +1 -0
  15. liesel_gam-0.1.0a1/src/liesel_gam/__init__.py +49 -0
  16. liesel_gam-0.1.0a1/src/liesel_gam/basis.py +573 -0
  17. liesel_gam-0.1.0a1/src/liesel_gam/basis_builder.py +960 -0
  18. liesel_gam-0.1.0a1/src/liesel_gam/category_mapping.py +163 -0
  19. liesel_gam-0.1.0a1/src/liesel_gam/consolidate_bases.py +107 -0
  20. liesel_gam-0.1.0a1/src/liesel_gam/constraint.py +107 -0
  21. liesel_gam-0.1.0a1/src/liesel_gam/dist.py +650 -0
  22. liesel_gam-0.1.0a1/src/liesel_gam/kernel.py +74 -0
  23. liesel_gam-0.1.0a1/src/liesel_gam/names.py +57 -0
  24. liesel_gam-0.1.0a1/src/liesel_gam/plots.py +472 -0
  25. liesel_gam-0.1.0a1/src/liesel_gam/predictor.py +87 -0
  26. liesel_gam-0.1.0a1/src/liesel_gam/registry.py +550 -0
  27. liesel_gam-0.1.0a1/src/liesel_gam/summary.py +558 -0
  28. liesel_gam-0.1.0a1/src/liesel_gam/term.py +976 -0
  29. liesel_gam-0.1.0a1/src/liesel_gam/term_builder.py +1221 -0
  30. liesel_gam-0.1.0a1/src/liesel_gam/var.py +159 -0
  31. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/uv.lock +127 -9
  32. liesel_gam-0.0.5.dev0/PKG-INFO +0 -166
  33. liesel_gam-0.0.5.dev0/README.md +0 -151
  34. liesel_gam-0.0.5.dev0/src/liesel_gam/__about__.py +0 -1
  35. liesel_gam-0.0.5.dev0/src/liesel_gam/__init__.py +0 -9
  36. liesel_gam-0.0.5.dev0/src/liesel_gam/dist.py +0 -100
  37. liesel_gam-0.0.5.dev0/src/liesel_gam/kernel.py +0 -48
  38. liesel_gam-0.0.5.dev0/src/liesel_gam/predictor.py +0 -48
  39. liesel_gam-0.0.5.dev0/src/liesel_gam/roles.py +0 -9
  40. liesel_gam-0.0.5.dev0/src/liesel_gam/var.py +0 -220
  41. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.gitattributes +0 -0
  42. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.pre-commit-config.yaml +0 -0
  43. {liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/LICENSE +0 -0
{liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.github/workflows/pre-commit.yml RENAMED
@@ -2,9 +2,10 @@ name: pre-commit
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  on:
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  push:
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- branches: [main]
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+ branches: [main, develop]
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  pull_request:
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- branches: [main]
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+ branches: [main, develop]
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+ workflow_dispatch: # trigger manually from GitHub UI
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  jobs:
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  pre-commit:
{liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.github/workflows/pypi.yml RENAMED
@@ -36,7 +36,7 @@ jobs:
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  run: uv build
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  - name: Publish package
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- uses: pypa/gh-action-pypi-publish@v1.5.0
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+ uses: pypa/gh-action-pypi-publish@v1.13.0
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  with:
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  user: __token__
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  password: ${{ secrets.PYPI_UPLOAD }}
liesel_gam-0.1.0a1/.github/workflows/pytest-notebooks.yml ADDED
@@ -0,0 +1,56 @@
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+ name: notebooks
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+
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+ on:
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+ push:
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+ branches: [main, develop]
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+ workflow_dispatch: # trigger manually from GitHub UI
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+
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+ jobs:
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+ pytest:
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+ runs-on: ubuntu-latest
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+ timeout-minutes: 15
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+
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+ strategy:
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+ matrix:
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+ python-version: ["3.13"]
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+ notebook-dir: ["basic", "composite", "lin", "multivariate", "univariate"]
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+
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+ steps:
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+ - name: Check out repository
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+ uses: actions/checkout@v4
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+
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+ - name: Install uv and set the python version
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+ uses: astral-sh/setup-uv@v5
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+ with:
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+ python-version: ${{ matrix.python-version }}
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+ enable-cache: true
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+ cache-dependency-glob: "uv.lock"
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+
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+
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+ - name: Set up R
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+ uses: r-lib/actions/setup-r@v2
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+ with:
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+ r-version: 'release'
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+ use-public-rspm: true
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+
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+ - name: Fix R library path
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+ run: |
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+ echo "LD_LIBRARY_PATH=$(R RHOME)/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
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+
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+ - name: Install R dependencies
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+ run: |
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+ Rscript -e "install.packages(c('arrow', 'svglite'))"
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+
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+ - name: Install Package
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+ run: uv sync --locked --group dev
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+
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+ - name: Debug R environment
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+ run: |
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+ echo "R_HOME=$(R RHOME)"
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+ echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH"
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+ find $(R RHOME) -name methods.so
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+ find $(R RHOME) -name libR.so
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+
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+
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+ - name: Run pytest
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+ run: uv run pytest notebooks/${{ matrix.notebook-dir }} --nbval-lax --nbval-current-env
liesel_gam-0.0.5.dev0/.github/workflows/pytest-notebooks.yml → liesel_gam-0.1.0a1/.github/workflows/pytest-pull.yml RENAMED
@@ -1,8 +1,9 @@
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- name: notebooks
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+ name: pytest-pull
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  on:
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- push:
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- branches: [main]
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+ pull_request:
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+ branches: [main, develop]
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+ workflow_dispatch: # trigger manually from GitHub UI
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  jobs:
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  pytest:
@@ -31,12 +32,16 @@ jobs:
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  r-version: 'release'
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  use-public-rspm: true
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- - name: Install Package
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- run: uv sync --locked --group dev
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+ - name: Fix R library path
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+ run: |
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+ echo "LD_LIBRARY_PATH=$(R RHOME)/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
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- - name: Add R shared libraries to LD_LIBRARY_PATH
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+ - name: Install R dependencies
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  run: |
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- echo "LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):\$LD_LIBRARY_PATH" >> $GITHUB_ENV
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+ Rscript -e "install.packages('arrow')"
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+
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+ - name: Install Package
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+ run: uv sync --locked --group dev
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  - name: Debug R environment
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  run: |
@@ -47,4 +52,4 @@ jobs:
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  - name: Run pytest
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- run: uv run pytest tests/notebooks --nbval-lax --nbval-current-env
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+ run: uv run pytest --cov=liesel_gam
{liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.github/workflows/pytest.yml RENAMED
@@ -2,7 +2,8 @@ name: pytest
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  on:
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  push:
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- branches: [main]
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+ branches: [main, develop]
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+ workflow_dispatch: # trigger manually from GitHub UI
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  jobs:
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  pytest:
@@ -31,12 +32,16 @@ jobs:
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  r-version: 'release'
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  use-public-rspm: true
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- - name: Install Package
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- run: uv sync --locked --group dev
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+ - name: Fix R library path
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+ run: |
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+ echo "LD_LIBRARY_PATH=$(R RHOME)/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
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- - name: Add R shared libraries to LD_LIBRARY_PATH
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+ - name: Install R dependencies
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  run: |
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- echo "LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):\$LD_LIBRARY_PATH" >> $GITHUB_ENV
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+ Rscript -e "install.packages('arrow')"
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+
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+ - name: Install Package
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+ run: uv sync --locked --group dev
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  - name: Debug R environment
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  run: |
{liesel_gam-0.0.5.dev0 → liesel_gam-0.1.0a1}/.gitignore RENAMED
@@ -176,3 +176,7 @@ cython_debug/
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  /.vscode
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  /tests/data
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  .DS_Store
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+ notebooks/test_ti_smooth.ipynb
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+ notebooks/test_mrf.R
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+ img/Präsentation1.pptx
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+ covtest.sh